HEADER OXIDOREDUCTASE 22-OCT-19 6L58 TITLE CU(II) LOADED TEGILLARCA GRANOSA M-FERRITIN SOAKED WITH FE(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRITIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.16.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TEGILLARCA GRANOSA; SOURCE 3 ORGANISM_COMMON: MALAYSIAN COCKLE; SOURCE 4 ORGANISM_TAXID: 220873; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FERRITIN, COPPER, TEGILLARCA GRANOSA, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 EUKARYOTIC STRUCTURAL GENOMICS, CESG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.Q.JIANG,X.R.SU,T.H.MING,H.S.HUAN REVDAT 3 22-NOV-23 6L58 1 REMARK REVDAT 2 20-APR-22 6L58 1 JRNL LINK REVDAT 1 06-NOV-19 6L58 0 JRNL AUTH T.H.MING,Q.Q.JIANG,C.HUO,H.S.HUAN,Y.WU,C.SU,X.QIU,C.LU, JRNL AUTH 2 J.ZHOU,Y.LI,J.HAN,Z.ZHANG,X.R.SU JRNL TITL STRUCTURAL INSIGHTS INTO THE EFFECTS OF INTERACTIONS WITH JRNL TITL 2 IRON AND COPPER IONS ON FERRITIN FROM THE BLOOD CLAM JRNL TITL 3 TEGILLARCA GRANOSA. JRNL REF FRONT MOL BIOSCI V. 9 00008 2022 JRNL REFN ESSN 2296-889X JRNL PMID 35359603 JRNL DOI 10.3389/FMOLB.2022.800008 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.344 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 10486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.541 REMARK 3 FREE R VALUE TEST SET COUNT : 581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3009 - 6.1875 0.89 2431 118 0.1732 0.2434 REMARK 3 2 6.1875 - 4.9151 0.98 2582 137 0.2084 0.2821 REMARK 3 3 4.9151 - 4.2949 0.97 2512 167 0.1697 0.2477 REMARK 3 4 4.2949 - 3.9027 0.92 2380 159 0.2103 0.3064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.483 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5256 REMARK 3 ANGLE : 0.503 7148 REMARK 3 CHIRALITY : 0.036 779 REMARK 3 PLANARITY : 0.003 962 REMARK 3 DIHEDRAL : 17.094 3114 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.73890 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10532 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : 0.16700 REMARK 200 FOR THE DATA SET : 10.3570 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3A9K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M TRIS REMARK 280 HYDROCHLORIDE PH 7.5, A PRECIPITANT SOLUTION OF 30% V/V 2- REMARK 280 PROPANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 108.64400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.72564 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.69433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 108.64400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 62.72564 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.69433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 108.64400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 62.72564 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.69433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 108.64400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 62.72564 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.69433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 108.64400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 62.72564 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.69433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 108.64400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 62.72564 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.69433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 125.45129 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.38867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 125.45129 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.38867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 125.45129 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.38867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 125.45129 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.38867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 125.45129 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.38867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 125.45129 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.38867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 85350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 130510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -870.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 134.08300 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 134.08300 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 134.08300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CU CU D 202 LIES ON A SPECIAL POSITION. REMARK 375 CU CU D 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 171 REMARK 465 SER A 172 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 171 REMARK 465 SER B 172 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 SER C 171 REMARK 465 SER C 172 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 171 REMARK 465 SER D 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CD OE1 NE2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 GLN A 99 CG CD OE1 NE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 GLN B 5 CG CD OE1 NE2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 GLN B 84 CG CD OE1 NE2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 GLN B 99 CG CD OE1 NE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 LYS C 20 CG CD CE NZ REMARK 470 LYS C 51 CG CD CE NZ REMARK 470 LYS C 54 CG CD CE NZ REMARK 470 GLU C 58 CG CD OE1 OE2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 GLU C 65 CG CD OE1 OE2 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 LYS C 85 CG CD CE NZ REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 LYS C 121 CG CD CE NZ REMARK 470 LYS C 137 CG CD CE NZ REMARK 470 LYS C 154 CG CD CE NZ REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 GLU C 168 CG CD OE1 OE2 REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 470 LYS D 20 CG CD CE NZ REMARK 470 LYS D 51 CG CD CE NZ REMARK 470 LYS D 54 CG CD CE NZ REMARK 470 GLU D 58 CG CD OE1 OE2 REMARK 470 ARG D 61 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 65 CG CD OE1 OE2 REMARK 470 LYS D 66 CG CD CE NZ REMARK 470 MET D 68 CG SD CE REMARK 470 LYS D 69 CG CD CE NZ REMARK 470 LYS D 73 CG CD CE NZ REMARK 470 ARG D 77 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 80 CG CD1 CD2 REMARK 470 LYS D 85 CG CD CE NZ REMARK 470 GLU D 90 CG CD OE1 OE2 REMARK 470 LYS D 106 CG CD CE NZ REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 LYS D 121 CG CD CE NZ REMARK 470 LYS D 137 CG CD CE NZ REMARK 470 GLU D 145 CG CD OE1 OE2 REMARK 470 LYS D 154 CG CD CE NZ REMARK 470 LYS D 167 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 78.49 -159.17 REMARK 500 MET A 128 -70.30 -63.01 REMARK 500 TYR A 135 -58.29 -127.85 REMARK 500 GLU A 168 -55.55 -139.81 REMARK 500 THR B 4 -159.69 49.11 REMARK 500 ASP B 124 74.67 -101.02 REMARK 500 TYR B 135 -54.81 -134.02 REMARK 500 TYR C 135 -59.61 -139.40 REMARK 500 VAL D 44 -60.28 -128.55 REMARK 500 TYR D 135 -53.95 -140.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 129 OD1 REMARK 620 2 ASP C 129 OD1 119.4 REMARK 620 3 GLU C 132 OE1 78.7 69.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 60 OE1 REMARK 620 2 GLU C 60 OE2 51.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 25 OE2 REMARK 620 2 GLU D 60 OE2 74.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 203 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 132 OE2 REMARK 620 2 GLU D 132 OE2 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU D 203 DBREF 6L58 A 1 172 UNP D3JCC5 D3JCC5_TEGGR 1 172 DBREF 6L58 B 1 172 UNP D3JCC5 D3JCC5_TEGGR 1 172 DBREF 6L58 C 1 172 UNP D3JCC5 D3JCC5_TEGGR 1 172 DBREF 6L58 D 1 172 UNP D3JCC5 D3JCC5_TEGGR 1 172 SEQRES 1 A 172 MET ALA GLN THR GLN PRO ARG GLN ASN PHE HIS VAL GLU SEQRES 2 A 172 SER GLU ALA GLY ILE ASN LYS GLN ILE ASN MET GLU LEU SEQRES 3 A 172 TYR ALA SER TYR VAL TYR GLN SER MET TYR MET TYR PHE SEQRES 4 A 172 ASP ARG ASP ASP VAL ALA LEU PRO SER PHE ALA LYS TYR SEQRES 5 A 172 PHE LYS HIS ASN SER GLU GLU GLU ARG GLU HIS ALA GLU SEQRES 6 A 172 LYS LEU MET LYS TYR GLN ASN LYS ARG GLY GLY ARG ILE SEQRES 7 A 172 VAL LEU GLN ASP ILE GLN LYS PRO ASP LEU ASP GLU TRP SEQRES 8 A 172 GLY SER PRO LEU GLU ALA MET GLN THR THR LEU ALA LEU SEQRES 9 A 172 GLU LYS SER VAL ASN GLN ALA LEU LEU ASP LEU HIS LYS SEQRES 10 A 172 ILE ALA ASP LYS HIS GLY ASP ALA GLN MET MET ASP PHE SEQRES 11 A 172 LEU GLU GLY GLU TYR LEU LYS GLU GLN VAL ASP ALA ILE SEQRES 12 A 172 GLU GLU ILE SER ASP HIS ILE THR ASN LEU LYS ARG VAL SEQRES 13 A 172 GLY THR GLY LEU GLY GLU TYR MET TYR ASP LYS GLU THR SEQRES 14 A 172 MET SER SER SEQRES 1 B 172 MET ALA GLN THR GLN PRO ARG GLN ASN PHE HIS VAL GLU SEQRES 2 B 172 SER GLU ALA GLY ILE ASN LYS GLN ILE ASN MET GLU LEU SEQRES 3 B 172 TYR ALA SER TYR VAL TYR GLN SER MET TYR MET TYR PHE SEQRES 4 B 172 ASP ARG ASP ASP VAL ALA LEU PRO SER PHE ALA LYS TYR SEQRES 5 B 172 PHE LYS HIS ASN SER GLU GLU GLU ARG GLU HIS ALA GLU SEQRES 6 B 172 LYS LEU MET LYS TYR GLN ASN LYS ARG GLY GLY ARG ILE SEQRES 7 B 172 VAL LEU GLN ASP ILE GLN LYS PRO ASP LEU ASP GLU TRP SEQRES 8 B 172 GLY SER PRO LEU GLU ALA MET GLN THR THR LEU ALA LEU SEQRES 9 B 172 GLU LYS SER VAL ASN GLN ALA LEU LEU ASP LEU HIS LYS SEQRES 10 B 172 ILE ALA ASP LYS HIS GLY ASP ALA GLN MET MET ASP PHE SEQRES 11 B 172 LEU GLU GLY GLU TYR LEU LYS GLU GLN VAL ASP ALA ILE SEQRES 12 B 172 GLU GLU ILE SER ASP HIS ILE THR ASN LEU LYS ARG VAL SEQRES 13 B 172 GLY THR GLY LEU GLY GLU TYR MET TYR ASP LYS GLU THR SEQRES 14 B 172 MET SER SER SEQRES 1 C 172 MET ALA GLN THR GLN PRO ARG GLN ASN PHE HIS VAL GLU SEQRES 2 C 172 SER GLU ALA GLY ILE ASN LYS GLN ILE ASN MET GLU LEU SEQRES 3 C 172 TYR ALA SER TYR VAL TYR GLN SER MET TYR MET TYR PHE SEQRES 4 C 172 ASP ARG ASP ASP VAL ALA LEU PRO SER PHE ALA LYS TYR SEQRES 5 C 172 PHE LYS HIS ASN SER GLU GLU GLU ARG GLU HIS ALA GLU SEQRES 6 C 172 LYS LEU MET LYS TYR GLN ASN LYS ARG GLY GLY ARG ILE SEQRES 7 C 172 VAL LEU GLN ASP ILE GLN LYS PRO ASP LEU ASP GLU TRP SEQRES 8 C 172 GLY SER PRO LEU GLU ALA MET GLN THR THR LEU ALA LEU SEQRES 9 C 172 GLU LYS SER VAL ASN GLN ALA LEU LEU ASP LEU HIS LYS SEQRES 10 C 172 ILE ALA ASP LYS HIS GLY ASP ALA GLN MET MET ASP PHE SEQRES 11 C 172 LEU GLU GLY GLU TYR LEU LYS GLU GLN VAL ASP ALA ILE SEQRES 12 C 172 GLU GLU ILE SER ASP HIS ILE THR ASN LEU LYS ARG VAL SEQRES 13 C 172 GLY THR GLY LEU GLY GLU TYR MET TYR ASP LYS GLU THR SEQRES 14 C 172 MET SER SER SEQRES 1 D 172 MET ALA GLN THR GLN PRO ARG GLN ASN PHE HIS VAL GLU SEQRES 2 D 172 SER GLU ALA GLY ILE ASN LYS GLN ILE ASN MET GLU LEU SEQRES 3 D 172 TYR ALA SER TYR VAL TYR GLN SER MET TYR MET TYR PHE SEQRES 4 D 172 ASP ARG ASP ASP VAL ALA LEU PRO SER PHE ALA LYS TYR SEQRES 5 D 172 PHE LYS HIS ASN SER GLU GLU GLU ARG GLU HIS ALA GLU SEQRES 6 D 172 LYS LEU MET LYS TYR GLN ASN LYS ARG GLY GLY ARG ILE SEQRES 7 D 172 VAL LEU GLN ASP ILE GLN LYS PRO ASP LEU ASP GLU TRP SEQRES 8 D 172 GLY SER PRO LEU GLU ALA MET GLN THR THR LEU ALA LEU SEQRES 9 D 172 GLU LYS SER VAL ASN GLN ALA LEU LEU ASP LEU HIS LYS SEQRES 10 D 172 ILE ALA ASP LYS HIS GLY ASP ALA GLN MET MET ASP PHE SEQRES 11 D 172 LEU GLU GLY GLU TYR LEU LYS GLU GLN VAL ASP ALA ILE SEQRES 12 D 172 GLU GLU ILE SER ASP HIS ILE THR ASN LEU LYS ARG VAL SEQRES 13 D 172 GLY THR GLY LEU GLY GLU TYR MET TYR ASP LYS GLU THR SEQRES 14 D 172 MET SER SER HET CU A 201 1 HET CU A 202 1 HET CU B 201 1 HET CU B 202 1 HET CU C 201 1 HET CU D 201 1 HET CU D 202 1 HET CU D 203 1 HETNAM CU COPPER (II) ION FORMUL 5 CU 8(CU 2+) FORMUL 13 HOH *(H2 O) HELIX 1 AA1 HIS A 11 ARG A 41 1 31 HELIX 2 AA2 LEU A 46 ARG A 74 1 29 HELIX 3 AA3 SER A 93 HIS A 122 1 30 HELIX 4 AA4 ASP A 124 TYR A 135 1 12 HELIX 5 AA5 TYR A 135 GLY A 157 1 23 HELIX 6 AA6 GLY A 159 LYS A 167 1 9 HELIX 7 AA7 HIS B 11 ASP B 40 1 30 HELIX 8 AA8 LEU B 46 ARG B 74 1 29 HELIX 9 AA9 SER B 93 HIS B 122 1 30 HELIX 10 AB1 ASP B 124 TYR B 135 1 12 HELIX 11 AB2 TYR B 135 GLY B 157 1 23 HELIX 12 AB3 GLY B 159 THR B 169 1 11 HELIX 13 AB4 HIS C 11 MET C 37 1 27 HELIX 14 AB5 LEU C 46 ARG C 74 1 29 HELIX 15 AB6 SER C 93 HIS C 122 1 30 HELIX 16 AB7 ASP C 124 TYR C 135 1 12 HELIX 17 AB8 TYR C 135 GLY C 157 1 23 HELIX 18 AB9 GLY C 159 THR C 169 1 11 HELIX 19 AC1 HIS D 11 ASP D 40 1 30 HELIX 20 AC2 LEU D 46 ARG D 74 1 29 HELIX 21 AC3 SER D 93 HIS D 122 1 30 HELIX 22 AC4 ASP D 124 TYR D 135 1 12 HELIX 23 AC5 TYR D 135 GLY D 157 1 23 HELIX 24 AC6 GLY D 159 THR D 169 1 11 LINK OE2 GLU B 60 CU CU B 202 1555 1555 2.13 LINK OD1 ASP B 129 CU CU B 201 1555 1555 2.49 LINK CU CU B 201 OD1 ASP C 129 1555 1555 2.61 LINK CU CU B 201 OE1 GLU C 132 1555 1555 2.38 LINK OE1 GLU C 60 CU CU C 201 1555 1555 2.36 LINK OE2 GLU C 60 CU CU C 201 1555 1555 2.69 LINK OE2 GLU D 25 CU CU D 201 1555 1555 2.69 LINK OE2 GLU D 60 CU CU D 201 1555 1555 2.11 LINK OE2 GLU D 132 CU CU D 203 1555 1555 2.29 LINK OE2 GLU D 132 CU CU D 203 1555 2555 2.29 SITE 1 AC1 4 GLU A 25 GLU A 60 HIS A 63 GLN A 139 SITE 1 AC2 3 GLU A 132 MET C 128 GLU C 132 SITE 1 AC3 6 ASP A 129 GLU A 132 ASP B 129 GLU B 132 SITE 2 AC3 6 ASP C 129 GLU C 132 SITE 1 AC4 4 GLU B 25 GLU B 60 HIS B 63 GLN B 139 SITE 1 AC5 4 GLU C 25 GLU C 60 HIS C 63 GLN C 139 SITE 1 AC6 4 GLU D 25 GLU D 60 HIS D 63 GLN D 139 SITE 1 AC7 1 CU D 203 SITE 1 AC8 3 ASP D 129 GLU D 132 CU D 202 CRYST1 217.288 217.288 134.083 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004602 0.002657 0.000000 0.00000 SCALE2 0.000000 0.005314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007458 0.00000