HEADER TRANSFERASE 24-OCT-19 6L5P TITLE CRYSTAL STRUCTURE OF GGCGT IN COMPLEX WITH UDP-GLU COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGCGT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCYRRHIZA GLABRA; SOURCE 3 ORGANISM_TAXID: 49827; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DI-C-GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHANG,F.D.LI,M.YE REVDAT 3 22-NOV-23 6L5P 1 REMARK REVDAT 2 04-MAR-20 6L5P 1 JRNL REVDAT 1 19-FEB-20 6L5P 0 JRNL AUTH M.ZHANG,F.D.LI,K.LI,Z.L.WANG,Y.X.WANG,J.B.HE,H.F.SU, JRNL AUTH 2 Z.Y.ZHANG,C.B.CHI,X.M.SHI,C.H.YUN,Z.Y.ZHANG,Z.M.LIU, JRNL AUTH 3 L.R.ZHANG,D.H.YANG,M.MA,X.QIAO,M.YE JRNL TITL FUNCTIONAL CHARACTERIZATION AND STRUCTURAL BASIS OF AN JRNL TITL 2 EFFICIENT DI-C-GLYCOSYLTRANSFERASE FROMGLYCYRRHIZA GLABRA. JRNL REF J.AM.CHEM.SOC. V. 142 3506 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 31986016 JRNL DOI 10.1021/JACS.9B12211 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 3 NUMBER OF REFLECTIONS : 11446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4480 - 4.1294 0.99 3429 192 0.2010 0.2378 REMARK 3 2 4.1294 - 3.2792 0.99 3332 159 0.2455 0.2956 REMARK 3 3 3.2792 - 2.8651 0.86 2839 153 0.2923 0.3144 REMARK 3 4 2.8651 - 2.6034 0.39 1265 77 0.3013 0.3609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 346:469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.291 -9.324 -10.804 REMARK 3 T TENSOR REMARK 3 T11: -0.3492 T22: 0.2829 REMARK 3 T33: -0.2036 T12: 0.1216 REMARK 3 T13: 0.2986 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.0239 L22: 0.6360 REMARK 3 L33: 1.6224 L12: 0.1607 REMARK 3 L13: -0.2071 L23: 0.1588 REMARK 3 S TENSOR REMARK 3 S11: 0.4290 S12: -0.2422 S13: 0.0292 REMARK 3 S21: 0.0255 S22: 0.1186 S23: -0.6619 REMARK 3 S31: 0.0120 S32: 1.0935 S33: 0.5520 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 16:251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.250 -27.051 -6.908 REMARK 3 T TENSOR REMARK 3 T11: 0.4827 T22: 0.0777 REMARK 3 T33: 0.4647 T12: 0.1510 REMARK 3 T13: 0.0298 T23: 0.1356 REMARK 3 L TENSOR REMARK 3 L11: 0.9487 L22: 0.9191 REMARK 3 L33: 2.3369 L12: -0.1948 REMARK 3 L13: -0.1923 L23: 1.4103 REMARK 3 S TENSOR REMARK 3 S11: -0.1647 S12: -0.2657 S13: -0.8176 REMARK 3 S21: 0.8941 S22: -0.0772 S23: 0.3257 REMARK 3 S31: 1.5112 S32: 0.1081 S33: -0.4199 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 252:281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.387 -11.010 -26.008 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.4459 REMARK 3 T33: 0.1523 T12: 0.1310 REMARK 3 T13: 0.3837 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.0124 L22: 0.2754 REMARK 3 L33: 0.3806 L12: 0.0556 REMARK 3 L13: 0.0629 L23: 0.3223 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.2321 S13: -0.0558 REMARK 3 S21: -0.4785 S22: 0.1158 S23: -0.4842 REMARK 3 S31: -0.1612 S32: 0.5842 S33: 0.7706 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 282:345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.352 -0.871 -28.137 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.4524 REMARK 3 T33: 0.1817 T12: 0.0868 REMARK 3 T13: 0.0864 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 3.0192 L22: 2.7816 REMARK 3 L33: 3.7024 L12: -0.4265 REMARK 3 L13: 0.4669 L23: -0.6091 REMARK 3 S TENSOR REMARK 3 S11: 0.4288 S12: 0.3951 S13: 0.1781 REMARK 3 S21: -0.1435 S22: 0.0788 S23: 0.3358 REMARK 3 S31: -0.7737 S32: 0.1223 S33: -0.2525 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.91300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ACW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M TRIS, PH REMARK 280 8.5, 25% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.94600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.94600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.58900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.73400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.58900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.73400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.94600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.58900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.73400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.94600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.58900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.73400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 HIS A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 14 REMARK 465 VAL A 15 REMARK 465 SER A 82 REMARK 465 ASP A 83 REMARK 465 SER A 84 REMARK 465 THR A 85 REMARK 465 ILE A 86 REMARK 465 SER A 87 REMARK 465 THR A 88 REMARK 465 ASP A 89 REMARK 465 ILE A 315 REMARK 465 VAL A 316 REMARK 465 ASP A 317 REMARK 465 ARG A 318 REMARK 465 ALA A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 GLU A 322 REMARK 465 GLY A 323 REMARK 465 LEU A 324 REMARK 465 LYS A 470 REMARK 465 ASN A 471 REMARK 465 VAL A 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 92 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 PHE A 330 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 LYS A 449 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 42 78.07 59.31 REMARK 500 PRO A 50 95.59 -65.09 REMARK 500 VAL A 54 -73.49 -75.59 REMARK 500 SER A 146 -167.61 -118.66 REMARK 500 LYS A 169 59.86 -106.62 REMARK 500 SER A 181 -78.51 -67.82 REMARK 500 LYS A 212 34.26 -83.96 REMARK 500 VAL A 237 -71.75 -72.63 REMARK 500 GLU A 271 33.36 -85.22 REMARK 500 THR A 286 79.39 54.77 REMARK 500 LYS A 340 72.80 58.65 REMARK 500 LYS A 341 -28.50 -140.98 REMARK 500 LYS A 346 79.46 -119.53 REMARK 500 LEU A 387 -52.24 -123.22 REMARK 500 LEU A 387 -50.65 -123.22 REMARK 500 ASP A 411 -172.53 59.35 REMARK 500 SER A 452 -79.97 -134.61 REMARK 500 VAL A 453 -72.63 -74.45 REMARK 500 TRP A 468 41.81 -82.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 632 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 634 DISTANCE = 7.18 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UPG A 501 DBREF 6L5P A -1 472 PDB 6L5P 6L5P -1 472 SEQRES 1 A 474 GLY SER MET GLY GLU ASN ASN MET SER SER ILE ALA PRO SEQRES 2 A 474 HIS PRO VAL VAL HIS VAL ALA LEU LEU PRO SER ALA GLY SEQRES 3 A 474 MET GLY HIS LEU THR PRO PHE LEU ARG LEU ALA SER LEU SEQRES 4 A 474 LEU LEU HIS GLN HIS CYS HIS VAL THR LEU ILE THR PRO SEQRES 5 A 474 GLN PRO THR VAL SER LYS ALA GLU GLU ASP LEU LEU SER SEQRES 6 A 474 ARG PHE LEU SER ALA PHE PRO GLN VAL ASN GLN LEU HIS SEQRES 7 A 474 PHE HIS LEU PRO PRO SER ASP SER THR ILE SER THR ASP SEQRES 8 A 474 PRO PHE PHE LEU GLN PHE ALA SER ILE ARG SER SER SER SEQRES 9 A 474 HIS LEU LEU THR PRO LEU LEU SER SER LEU THR PRO PRO SEQRES 10 A 474 LEU SER SER PHE ILE TYR ASP MET THR LEU ILE SER PRO SEQRES 11 A 474 LEU LEU PRO ILE ALA GLU SER LEU GLY VAL PRO HIS TYR SEQRES 12 A 474 ILE LEU PHE THR SER SER ALA THR MET PHE SER PHE PHE SEQRES 13 A 474 SER TYR PHE PRO THR LEU ALA LYS SER GLU SER PHE PRO SEQRES 14 A 474 GLY LYS LEU ASP PHE VAL GLU ILE PRO GLY VAL SER VAL SEQRES 15 A 474 SER SER ILE PRO ARG SER SER ILE PRO PRO PRO LEU LEU SEQRES 16 A 474 VAL PRO ASN SER LEU PHE GLY LYS LEU PHE MET GLU ASP SEQRES 17 A 474 SER PRO LYS LEU LYS LYS LEU HIS GLY VAL LEU VAL ASN SEQRES 18 A 474 THR PHE GLU GLY ILE GLU LYS LEU SER LEU GLU ALA LEU SEQRES 19 A 474 ASN GLY GLY LYS VAL VAL LYS GLY LEU PRO PRO VAL TYR SEQRES 20 A 474 GLY VAL GLY PRO PHE VAL PRO CYS GLU PHE GLU LYS VAL SEQRES 21 A 474 VAL LYS ARG GLY GLU THR ILE SER GLU TRP LEU ASP GLU SEQRES 22 A 474 GLN PRO SER GLY SER VAL VAL TYR VAL SER PHE GLY SER SEQRES 23 A 474 ARG THR ALA MET GLY ARG GLU GLN LEU ARG GLU VAL GLY SEQRES 24 A 474 ASP GLY LEU VAL LYS SER GLY TRP ARG PHE LEU TRP VAL SEQRES 25 A 474 VAL LYS ASP LYS ILE VAL ASP ARG ALA GLU GLU GLU GLY SEQRES 26 A 474 LEU ASP GLY VAL LEU GLY PHE GLU LEU VAL GLU ARG MET SEQRES 27 A 474 VAL LYS GLU LYS LYS GLY LEU VAL VAL LYS GLU TRP VAL SEQRES 28 A 474 ASP GLN SER GLU ILE LEU GLY HIS LYS ALA VAL GLY GLY SEQRES 29 A 474 PHE VAL SER HIS CYS GLY TRP ASN SER VAL VAL GLU ALA SEQRES 30 A 474 ALA TRP PHE GLY VAL LYS ILE LEU GLY TRP PRO LEU HIS SEQRES 31 A 474 GLY ASP GLN LYS ILE ASN ALA GLU VAL VAL ALA LYS GLY SEQRES 32 A 474 GLY TRP GLY VAL TRP LYS GLU GLY TRP ASP TRP GLU GLY SEQRES 33 A 474 GLU ARG LEU VAL LYS GLY GLU GLU ILE GLY GLU ALA ILE SEQRES 34 A 474 ARG GLU VAL MET ASN ASP GLU SER LEU VAL MET LYS ALA SEQRES 35 A 474 THR GLN VAL LYS LYS ASP ALA ARG LYS ALA ILE SER VAL SEQRES 36 A 474 GLY GLY GLY CYS GLU VAL ALA LEU GLN LYS LEU MET GLU SEQRES 37 A 474 VAL TRP LYS LYS ASN VAL HET UPG A 501 36 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 UPG C15 H24 N2 O17 P2 FORMUL 3 HOH *34(H2 O) HELIX 1 AA1 GLY A 24 GLN A 41 1 18 HELIX 2 AA2 SER A 55 PHE A 69 1 15 HELIX 3 AA3 LEU A 93 SER A 100 1 8 HELIX 4 AA4 SER A 101 HIS A 103 5 3 HELIX 5 AA5 LEU A 104 SER A 111 1 8 HELIX 6 AA6 LEU A 125 SER A 135 1 11 HELIX 7 AA7 SER A 147 SER A 163 1 17 HELIX 8 AA8 SER A 186 ILE A 188 5 3 HELIX 9 AA9 PRO A 189 LEU A 193 5 5 HELIX 10 AB1 SER A 197 SER A 207 1 11 HELIX 11 AB2 PRO A 208 LEU A 213 5 6 HELIX 12 AB3 GLU A 225 GLY A 234 1 10 HELIX 13 AB4 GLU A 263 GLU A 271 1 9 HELIX 14 AB5 GLY A 289 SER A 303 1 15 HELIX 15 AB6 GLY A 329 GLU A 339 1 11 HELIX 16 AB7 ASP A 350 HIS A 357 1 8 HELIX 17 AB8 GLY A 368 GLY A 379 1 12 HELIX 18 AB9 ASP A 390 GLY A 401 1 12 HELIX 19 AC1 GLU A 408 ASP A 411 5 4 HELIX 20 AC2 LYS A 419 ASP A 433 1 15 HELIX 21 AC3 GLU A 434 ALA A 450 1 17 HELIX 22 AC4 GLY A 455 TRP A 468 1 14 SHEET 1 AA1 7 ASN A 73 HIS A 78 0 SHEET 2 AA1 7 VAL A 45 GLN A 51 1 N LEU A 47 O ASN A 73 SHEET 3 AA1 7 VAL A 17 LEU A 20 1 N LEU A 19 O THR A 46 SHEET 4 AA1 7 SER A 118 ASP A 122 1 O ILE A 120 N ALA A 18 SHEET 5 AA1 7 HIS A 140 PHE A 144 1 O TYR A 141 N PHE A 119 SHEET 6 AA1 7 VAL A 216 VAL A 218 1 O LEU A 217 N ILE A 142 SHEET 7 AA1 7 VAL A 244 GLY A 246 1 O TYR A 245 N VAL A 216 SHEET 1 AA2 2 PHE A 172 VAL A 173 0 SHEET 2 AA2 2 ILE A 183 PRO A 184 -1 O ILE A 183 N VAL A 173 SHEET 1 AA3 6 GLY A 342 VAL A 345 0 SHEET 2 AA3 6 PHE A 307 VAL A 310 1 N TRP A 309 O LEU A 343 SHEET 3 AA3 6 VAL A 277 SER A 281 1 N VAL A 280 O LEU A 308 SHEET 4 AA3 6 VAL A 360 SER A 365 1 O VAL A 364 N TYR A 279 SHEET 5 AA3 6 LYS A 381 GLY A 384 1 O LEU A 383 N PHE A 363 SHEET 6 AA3 6 GLY A 404 TRP A 406 1 O VAL A 405 N GLY A 384 CISPEP 1 GLN A 51 PRO A 52 0 2.07 CISPEP 2 THR A 113 PRO A 114 0 3.89 CISPEP 3 PHE A 166 PRO A 167 0 2.53 CISPEP 4 GLY A 248 PRO A 249 0 -0.26 SITE 1 AC1 18 GLY A 26 THR A 29 THR A 145 GLY A 283 SITE 2 AC1 18 SER A 284 ARG A 285 LYS A 312 TRP A 348 SITE 3 AC1 18 VAL A 349 GLN A 351 HIS A 366 GLY A 368 SITE 4 AC1 18 TRP A 369 ASN A 370 SER A 371 GLU A 374 SITE 5 AC1 18 ASP A 390 GLN A 391 CRYST1 87.178 139.468 73.892 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013533 0.00000