HEADER BLOOD CLOTTING 26-OCT-19 6L63 TITLE HUMAN COAGULATION FACTOR XIIA (FXIIA) BOUND WITH THE MACROCYCLIC TITLE 2 PEPTIDE F3 CONTAINING TWO (1S,2S)-2-ACHC RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XII; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HAGEMAN FACTOR,HAF; COMPND 5 EC: 3.4.21.38; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: F3; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS ENZYME, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR T.SENGOKU,T.KATOH,K.HIRATA,H.SUGA,K.OGATA REVDAT 4 22-NOV-23 6L63 1 REMARK REVDAT 3 15-NOV-23 6L63 1 LINK ATOM REVDAT 2 11-NOV-20 6L63 1 JRNL REVDAT 1 02-SEP-20 6L63 0 JRNL AUTH T.KATOH,T.SENGOKU,K.HIRATA,K.OGATA,H.SUGA JRNL TITL RIBOSOMAL SYNTHESIS AND DE NOVO DISCOVERY OF BIOACTIVE JRNL TITL 2 FOLDAMER PEPTIDES CONTAINING CYCLIC BETA-AMINO ACIDS. JRNL REF NAT.CHEM. V. 12 1081 2020 JRNL REFN ESSN 1755-4349 JRNL PMID 32839601 JRNL DOI 10.1038/S41557-020-0525-1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3546 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9630 - 6.6769 1.00 1472 152 0.2841 0.3201 REMARK 3 2 6.6769 - 5.3804 1.00 1417 145 0.2749 0.3074 REMARK 3 3 5.3804 - 4.7247 1.00 1401 144 0.2399 0.2913 REMARK 3 4 4.7247 - 4.3040 1.00 1379 140 0.2247 0.2444 REMARK 3 5 4.3040 - 4.0018 1.00 1376 141 0.2159 0.2520 REMARK 3 6 4.0018 - 3.7699 1.00 1376 141 0.2224 0.2815 REMARK 3 7 3.7699 - 3.5838 1.00 1367 143 0.2406 0.2811 REMARK 3 8 3.5838 - 3.4297 1.00 1363 137 0.2378 0.2987 REMARK 3 9 3.4297 - 3.2992 1.00 1365 142 0.2773 0.3199 REMARK 3 10 3.2992 - 3.1865 1.00 1368 135 0.2955 0.3377 REMARK 3 11 3.1865 - 3.0877 1.00 1347 143 0.3118 0.3645 REMARK 3 12 3.0877 - 3.0002 1.00 1360 145 0.3555 0.4201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 373 THROUGH 420 OR REMARK 3 (RESID 421 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 422 REMARK 3 THROUGH 433 OR RESID 435 THROUGH 490 OR REMARK 3 RESID 500 THROUGH 525 OR RESID 527 REMARK 3 THROUGH 529 OR (RESID 530 THROUGH 531 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 532 THROUGH 569 OR REMARK 3 RESID 578 THROUGH 592 OR (RESID 593 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 594 THROUGH 614)) REMARK 3 SELECTION : (CHAIN C AND (RESID 373 THROUGH 433 OR REMARK 3 RESID 435 THROUGH 490 OR RESID 500 REMARK 3 THROUGH 525 OR RESID 527 THROUGH 569 OR REMARK 3 RESID 578 THROUGH 615)) REMARK 3 ATOM PAIRS NUMBER : 1649 REMARK 3 RMSD : 0.089 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 162 REMARK 3 RMSD : 0.074 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18309 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 14.963 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 44.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6B77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 6.0~6.5, 24~26% REMARK 280 PEG3350, AND 200 MM NACL OR 200 MM AMMONIUM ACETATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.77000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.77000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 491 REMARK 465 ALA A 492 REMARK 465 ARG A 493 REMARK 465 PRO A 494 REMARK 465 SER A 495 REMARK 465 GLU A 496 REMARK 465 THR A 497 REMARK 465 THR A 498 REMARK 465 ASP A 571 REMARK 465 GLN A 572 REMARK 465 ALA A 573 REMARK 465 ALA A 574 REMARK 465 GLU A 575 REMARK 465 ARG A 576 REMARK 465 ARG A 577 REMARK 465 PRO C 494 REMARK 465 SER C 495 REMARK 465 GLU C 496 REMARK 465 THR C 497 REMARK 465 THR C 498 REMARK 465 LEU C 499 REMARK 465 GLU C 570 REMARK 465 ASP C 571 REMARK 465 GLN C 572 REMARK 465 ALA C 573 REMARK 465 ALA C 574 REMARK 465 GLU C 575 REMARK 465 ARG C 576 REMARK 465 SER C 616 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 GLU C 421 CG CD OE1 OE2 REMARK 470 ARG C 493 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 514 CG CD OE1 OE2 REMARK 470 GLU C 530 CG CD OE1 OE2 REMARK 470 ARG C 531 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 577 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 593 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N DTY D 1 CH3 ACE D 101 2.11 REMARK 500 N DTY B 1 CH3 ACE B 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 530 OH TYR D 4 4654 1.99 REMARK 500 OG SER A 540 OD2 ASP C 592 4654 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 559 CB CYS A 559 SG -0.152 REMARK 500 CYS C 559 CB CYS C 559 SG -0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 381 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 417 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 417 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 417 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 445 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU A 547 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 CYS A 559 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 CYS A 559 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 610 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 610 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 610 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 E6F B 8 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 E6F B 13 C - N - CA ANGL. DEV. = -18.3 DEGREES REMARK 500 E6F B 13 CA - C - N ANGL. DEV. = -21.2 DEGREES REMARK 500 ARG C 381 CB - CG - CD ANGL. DEV. = -28.4 DEGREES REMARK 500 ARG C 381 CG - CD - NE ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG C 381 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG C 381 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 417 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG C 417 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 LEU C 547 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 CYS C 559 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 CYS C 559 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG C 611 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG C 611 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 E6F D 13 C - N - CA ANGL. DEV. = -17.3 DEGREES REMARK 500 E6F D 13 CA - C - N ANGL. DEV. = -19.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 409 -168.59 -128.79 REMARK 500 PRO A 455 2.04 -69.95 REMARK 500 CYS A 475 -101.82 -102.78 REMARK 500 VAL A 537 -96.99 -89.01 REMARK 500 CYS A 569 -167.52 -128.97 REMARK 500 CYS A 590 100.94 -55.30 REMARK 500 LEU B 9 94.87 -66.95 REMARK 500 ASN B 15 33.75 -89.22 REMARK 500 THR C 409 -168.83 -129.15 REMARK 500 CYS C 475 -101.88 -102.83 REMARK 500 ALA C 491 -70.34 -55.24 REMARK 500 ALA C 492 -167.96 -126.36 REMARK 500 VAL C 537 -97.08 -88.83 REMARK 500 CYS C 590 101.05 -55.09 REMARK 500 LEU D 9 96.04 -68.75 REMARK 500 ASN D 15 33.17 -89.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 E6F B 8 LEU B 9 135.32 REMARK 500 E6F B 13 ARG B 14 -148.97 REMARK 500 E6F D 8 LEU D 9 137.38 REMARK 500 E6F D 13 ARG D 14 -145.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 E6F B 8 -22.56 REMARK 500 E6F B 13 13.69 REMARK 500 E6F D 8 -22.69 REMARK 500 E6F D 13 14.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 6L63 A 373 615 UNP P00748 FA12_HUMAN 373 615 DBREF 6L63 B 1 18 PDB 6L63 6L63 1 18 DBREF 6L63 C 373 616 UNP P00748 FA12_HUMAN 373 615 DBREF 6L63 D 1 18 PDB 6L63 6L63 1 18 SEQRES 1 A 243 VAL VAL GLY GLY LEU VAL ALA LEU ARG GLY ALA HIS PRO SEQRES 2 A 243 TYR ILE ALA ALA LEU TYR TRP GLY HIS SER PHE CYS ALA SEQRES 3 A 243 GLY SER LEU ILE ALA PRO CYS TRP VAL LEU THR ALA ALA SEQRES 4 A 243 HIS CYS LEU GLN ASP ARG PRO ALA PRO GLU ASP LEU THR SEQRES 5 A 243 VAL VAL LEU GLY GLN GLU ARG ARG ASN HIS SER CYS GLU SEQRES 6 A 243 PRO CYS GLN THR LEU ALA VAL ARG SER TYR ARG LEU HIS SEQRES 7 A 243 GLU ALA PHE SER PRO VAL SER TYR GLN HIS ASP LEU ALA SEQRES 8 A 243 LEU LEU ARG LEU GLN GLU ASP ALA ASP GLY SER CYS ALA SEQRES 9 A 243 LEU LEU SER PRO TYR VAL GLN PRO VAL CYS LEU PRO SER SEQRES 10 A 243 GLY ALA ALA ARG PRO SER GLU THR THR LEU CYS GLN VAL SEQRES 11 A 243 ALA GLY TRP GLY HIS GLN PHE GLU GLY ALA GLU GLU TYR SEQRES 12 A 243 ALA SER PHE LEU GLN GLU ALA GLN VAL PRO PHE LEU SER SEQRES 13 A 243 LEU GLU ARG CYS SER ALA PRO ASP VAL HIS GLY SER SER SEQRES 14 A 243 ILE LEU PRO GLY MET LEU CYS ALA GLY PHE LEU GLU GLY SEQRES 15 A 243 GLY THR ASP ALA CYS GLN GLY ASP SER GLY GLY PRO LEU SEQRES 16 A 243 VAL CYS GLU ASP GLN ALA ALA GLU ARG ARG LEU THR LEU SEQRES 17 A 243 GLN GLY ILE ILE SER TRP GLY SER GLY CYS GLY ASP ARG SEQRES 18 A 243 ASN LYS PRO GLY VAL TYR THR ASP VAL ALA TYR TYR LEU SEQRES 19 A 243 ALA TRP ILE ARG GLU HIS THR VAL SER SEQRES 1 B 18 DTY PHE ALA TYR ASP ARG ARG E6F LEU SER ASN ASN E6F SEQRES 2 B 18 ARG ASN TYR DCY GLY SEQRES 1 C 243 VAL VAL GLY GLY LEU VAL ALA LEU ARG GLY ALA HIS PRO SEQRES 2 C 243 TYR ILE ALA ALA LEU TYR TRP GLY HIS SER PHE CYS ALA SEQRES 3 C 243 GLY SER LEU ILE ALA PRO CYS TRP VAL LEU THR ALA ALA SEQRES 4 C 243 HIS CYS LEU GLN ASP ARG PRO ALA PRO GLU ASP LEU THR SEQRES 5 C 243 VAL VAL LEU GLY GLN GLU ARG ARG ASN HIS SER CYS GLU SEQRES 6 C 243 PRO CYS GLN THR LEU ALA VAL ARG SER TYR ARG LEU HIS SEQRES 7 C 243 GLU ALA PHE SER PRO VAL SER TYR GLN HIS ASP LEU ALA SEQRES 8 C 243 LEU LEU ARG LEU GLN GLU ASP ALA ASP GLY SER CYS ALA SEQRES 9 C 243 LEU LEU SER PRO TYR VAL GLN PRO VAL CYS LEU PRO SER SEQRES 10 C 243 GLY ALA ALA ARG PRO SER GLU THR THR LEU CYS GLN VAL SEQRES 11 C 243 ALA GLY TRP GLY HIS GLN PHE GLU GLY ALA GLU GLU TYR SEQRES 12 C 243 ALA SER PHE LEU GLN GLU ALA GLN VAL PRO PHE LEU SER SEQRES 13 C 243 LEU GLU ARG CYS SER ALA PRO ASP VAL HIS GLY SER SER SEQRES 14 C 243 ILE LEU PRO GLY MET LEU CYS ALA GLY PHE LEU GLU GLY SEQRES 15 C 243 GLY THR ASP ALA CYS GLN GLY ASP SER GLY GLY PRO LEU SEQRES 16 C 243 VAL CYS GLU ASP GLN ALA ALA GLU ARG ARG LEU THR LEU SEQRES 17 C 243 GLN GLY ILE ILE SER TRP GLY SER GLY CYS GLY ASP ARG SEQRES 18 C 243 ASN LYS PRO GLY VAL TYR THR ASP VAL ALA TYR TYR LEU SEQRES 19 C 243 ALA TRP ILE ARG GLU HIS THR VAL SER SEQRES 1 D 18 DTY PHE ALA TYR ASP ARG ARG E6F LEU SER ASN ASN E6F SEQRES 2 D 18 ARG ASN TYR DCY GLY HET DTY B 1 12 HET E6F B 8 9 HET E6F B 13 9 HET DCY B 17 6 HET DTY D 1 12 HET E6F D 8 9 HET E6F D 13 9 HET DCY D 17 6 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG F 3 14 HET ACE B 101 3 HET ACE D 101 3 HETNAM DTY D-TYROSINE HETNAM E6F (1~{S},2~{S})-2-AZANYLCYCLOHEXANE-1-CARBOXYLIC ACID HETNAM DCY D-CYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ACE ACETYL GROUP HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 DTY 2(C9 H11 N O3) FORMUL 2 E6F 4(C7 H13 N O2) FORMUL 2 DCY 2(C3 H7 N O2 S) FORMUL 5 NAG 5(C8 H15 N O6) FORMUL 7 ACE 2(C2 H4 O) HELIX 1 AA1 ALA A 410 GLN A 415 5 6 HELIX 2 AA2 ALA A 419 ASP A 422 5 4 HELIX 3 AA3 SER A 528 SER A 533 1 6 HELIX 4 AA4 HIS A 538 ILE A 542 5 5 HELIX 5 AA5 TYR A 605 HIS A 612 1 8 HELIX 6 AA6 ALA C 410 GLN C 415 5 6 HELIX 7 AA7 ALA C 419 ASP C 422 5 4 HELIX 8 AA8 SER C 528 SER C 533 1 6 HELIX 9 AA9 HIS C 538 ILE C 542 5 5 HELIX 10 AB1 TYR C 606 HIS C 613 1 8 SHEET 1 AA1 8 LEU A 377 VAL A 378 0 SHEET 2 AA1 8 GLN A 520 VAL A 524 -1 O GLU A 521 N LEU A 377 SHEET 3 AA1 8 CYS A 500 GLY A 504 -1 N VAL A 502 O ALA A 522 SHEET 4 AA1 8 PRO A 566 CYS A 569 -1 O VAL A 568 N GLN A 501 SHEET 5 AA1 8 THR A 579 TRP A 586 -1 O THR A 579 N CYS A 569 SHEET 6 AA1 8 GLY A 597 ASP A 601 -1 O VAL A 598 N TRP A 586 SHEET 7 AA1 8 MET A 546 ALA A 549 -1 N LEU A 547 O TYR A 599 SHEET 8 AA1 8 PHE A 526 LEU A 527 -1 N LEU A 527 O CYS A 548 SHEET 1 AA2 7 ILE A 387 TRP A 392 0 SHEET 2 AA2 7 SER A 395 ALA A 403 -1 O SER A 395 N TRP A 392 SHEET 3 AA2 7 TRP A 406 THR A 409 -1 O LEU A 408 N SER A 400 SHEET 4 AA2 7 ALA A 463 LEU A 467 -1 O LEU A 465 N VAL A 407 SHEET 5 AA2 7 GLN A 440 LEU A 449 -1 N SER A 446 O ARG A 466 SHEET 6 AA2 7 THR A 424 LEU A 427 -1 N LEU A 427 O GLN A 440 SHEET 7 AA2 7 ILE A 387 TRP A 392 -1 N TYR A 391 O THR A 424 SHEET 1 AA3 8 LEU C 377 VAL C 378 0 SHEET 2 AA3 8 GLN C 520 GLN C 523 -1 O GLU C 521 N LEU C 377 SHEET 3 AA3 8 GLN C 501 GLY C 504 -1 N VAL C 502 O ALA C 522 SHEET 4 AA3 8 PRO C 566 CYS C 569 -1 O VAL C 568 N GLN C 501 SHEET 5 AA3 8 THR C 579 TRP C 586 -1 O THR C 579 N CYS C 569 SHEET 6 AA3 8 GLY C 598 ASP C 602 -1 O VAL C 599 N TRP C 586 SHEET 7 AA3 8 MET C 546 ALA C 549 -1 N LEU C 547 O TYR C 600 SHEET 8 AA3 8 PHE C 526 LEU C 527 -1 N LEU C 527 O CYS C 548 SHEET 1 AA4 7 ILE C 387 TRP C 392 0 SHEET 2 AA4 7 SER C 395 ALA C 403 -1 O SER C 395 N TRP C 392 SHEET 3 AA4 7 TRP C 406 THR C 409 -1 O LEU C 408 N SER C 400 SHEET 4 AA4 7 ALA C 463 LEU C 467 -1 O LEU C 465 N VAL C 407 SHEET 5 AA4 7 GLN C 440 LEU C 449 -1 N SER C 446 O ARG C 466 SHEET 6 AA4 7 THR C 424 LEU C 427 -1 N LEU C 427 O GLN C 440 SHEET 7 AA4 7 ILE C 387 TRP C 392 -1 N ALA C 389 O VAL C 426 SSBOND 1 CYS A 397 CYS A 413 1555 1555 2.02 SSBOND 2 CYS A 405 CYS A 475 1555 1555 2.05 SSBOND 3 CYS A 436 CYS A 439 1555 1555 2.03 SSBOND 4 CYS A 500 CYS A 569 1555 1555 2.06 SSBOND 5 CYS A 532 CYS A 548 1555 1555 2.00 SSBOND 6 CYS A 559 CYS A 590 1555 1555 2.03 SSBOND 7 CYS C 397 CYS C 413 1555 1555 1.99 SSBOND 8 CYS C 405 CYS C 475 1555 1555 2.05 SSBOND 9 CYS C 436 CYS C 439 1555 1555 2.04 SSBOND 10 CYS C 500 CYS C 569 1555 1555 2.04 SSBOND 11 CYS C 532 CYS C 548 1555 1555 2.02 SSBOND 12 CYS C 559 CYS C 590 1555 1555 2.03 LINK ND2 ASN A 433 C1 NAG E 1 1555 1555 1.44 LINK C DTY B 1 N PHE B 2 1555 1555 1.32 LINK N DTY B 1 C ACE B 101 1555 1555 1.35 LINK C ARG B 7 N E6F B 8 1555 1555 1.33 LINK C E6F B 8 N LEU B 9 1555 1555 1.33 LINK C ASN B 12 N E6F B 13 1555 1555 1.33 LINK C E6F B 13 N ARG B 14 1555 1555 1.33 LINK C TYR B 16 N DCY B 17 1555 1555 1.33 LINK C DCY B 17 N GLY B 18 1555 1555 1.34 LINK SG DCY B 17 CH3 ACE B 101 1555 1555 1.81 LINK ND2 ASN C 433 C1 NAG F 1 1555 1555 1.44 LINK C DTY D 1 N PHE D 2 1555 1555 1.34 LINK N DTY D 1 C ACE D 101 1555 1555 1.34 LINK C ARG D 7 N E6F D 8 1555 1555 1.34 LINK C E6F D 8 N LEU D 9 1555 1555 1.33 LINK C ASN D 12 N E6F D 13 1555 1555 1.34 LINK C E6F D 13 N ARG D 14 1555 1555 1.33 LINK C TYR D 16 N DCY D 17 1555 1555 1.33 LINK C DCY D 17 N GLY D 18 1555 1555 1.33 LINK SG DCY D 17 CH3 ACE D 101 1555 1555 1.81 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.39 LINK O4 NAG F 2 C1 NAG F 3 1555 1555 1.39 CRYST1 68.260 105.520 123.540 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014650 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008095 0.00000