HEADER DNA BINDING PROTEIN 29-OCT-19 6L6L TITLE STRUCTURAL BASIS OF NR4A2 HOMODIMERS BINDING TO SELECTIVE NUR- TITLE 2 RESPONSIVE ELEMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR RELATED 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 2 ISOFORM 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*AP*AP*AP*GP*GP*TP*CP*AP*AP*AP*CP*TP*GP*TP*GP*AP*CP*CP*TP*AP*T)- COMPND 9 3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*TP*AP*TP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*TP*TP*GP*AP*CP*CP*TP*T)- COMPND 15 3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR4A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NR4A2/NURR1, NUCLEAR RECEPTORS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.JIANG,Y.CHEN REVDAT 4 22-NOV-23 6L6L 1 REMARK REVDAT 3 01-JAN-20 6L6L 1 JRNL REVDAT 2 27-NOV-19 6L6L 1 JRNL REVDAT 1 20-NOV-19 6L6L 0 JRNL AUTH L.JIANG,S.DAI,J.LI,X.LIANG,L.QU,X.CHEN,M.GUO,Z.CHEN,L.CHEN, JRNL AUTH 2 H.WEI,Y.CHEN JRNL TITL STRUCTURAL BASIS OF BINDING OF HOMODIMERS OF THE NUCLEAR JRNL TITL 2 RECEPTOR NR4A2 TO SELECTIVE NUR-RESPONSIVE DNA ELEMENTS. JRNL REF J.BIOL.CHEM. V. 294 19795 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31723028 JRNL DOI 10.1074/JBC.RA119.010730 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 8109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2260 - 5.0493 0.99 1262 140 0.1643 0.1881 REMARK 3 2 5.0493 - 4.0096 1.00 1250 138 0.1892 0.2285 REMARK 3 3 4.0096 - 3.5032 1.00 1217 136 0.2067 0.2343 REMARK 3 4 3.5032 - 3.1832 0.97 1195 131 0.2477 0.2933 REMARK 3 5 3.1832 - 2.9551 0.99 1218 137 0.3021 0.3375 REMARK 3 6 2.9551 - 2.7810 0.94 1158 127 0.3040 0.3726 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2298 REMARK 3 ANGLE : 0.751 3258 REMARK 3 CHIRALITY : 0.036 355 REMARK 3 PLANARITY : 0.003 275 REMARK 3 DIHEDRAL : 19.679 1248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9241 -21.4514 -19.9010 REMARK 3 T TENSOR REMARK 3 T11: 0.3965 T22: 0.4192 REMARK 3 T33: 0.3347 T12: 0.0197 REMARK 3 T13: -0.0312 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.5950 L22: 0.5886 REMARK 3 L33: 1.3361 L12: -0.1673 REMARK 3 L13: 0.1430 L23: 0.1883 REMARK 3 S TENSOR REMARK 3 S11: 0.2892 S12: 0.1846 S13: -0.2180 REMARK 3 S21: 0.0407 S22: 0.0174 S23: 0.1167 REMARK 3 S31: 0.3731 S32: -0.4340 S33: -0.0713 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3581 -13.2077 -11.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.5623 T22: 0.3376 REMARK 3 T33: 0.3466 T12: -0.1169 REMARK 3 T13: -0.1305 T23: -0.0927 REMARK 3 L TENSOR REMARK 3 L11: 4.1997 L22: 1.0263 REMARK 3 L33: 0.7869 L12: -1.0573 REMARK 3 L13: 0.3017 L23: -0.8288 REMARK 3 S TENSOR REMARK 3 S11: 0.1267 S12: 0.6721 S13: 0.6578 REMARK 3 S21: -0.4593 S22: 0.0744 S23: 0.2642 REMARK 3 S31: -0.1167 S32: 0.0011 S33: 0.0597 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4224 -28.2917 -10.1831 REMARK 3 T TENSOR REMARK 3 T11: 0.3992 T22: 0.2255 REMARK 3 T33: 0.3683 T12: 0.0041 REMARK 3 T13: -0.1063 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.5797 L22: 0.9265 REMARK 3 L33: 1.6156 L12: -0.3464 REMARK 3 L13: 0.3201 L23: -0.2885 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: -0.1501 S13: -0.9314 REMARK 3 S21: -0.1350 S22: 0.3077 S23: -0.0541 REMARK 3 S31: -0.0030 S32: -0.2105 S33: -0.0969 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 316 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4666 -21.6924 -17.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.4163 T22: 0.2954 REMARK 3 T33: 0.4796 T12: 0.0212 REMARK 3 T13: -0.1388 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.1628 L22: 0.0578 REMARK 3 L33: 3.2463 L12: 0.2635 REMARK 3 L13: 1.9312 L23: 0.4152 REMARK 3 S TENSOR REMARK 3 S11: 0.3190 S12: 0.5128 S13: 0.1670 REMARK 3 S21: 0.7300 S22: 0.1713 S23: -0.6252 REMARK 3 S31: 0.4812 S32: 1.2694 S33: -0.0853 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6166 -9.5162 -24.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.7717 T22: 0.3994 REMARK 3 T33: 0.4610 T12: -0.0244 REMARK 3 T13: -0.0621 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.0415 L22: 2.7770 REMARK 3 L33: 0.7178 L12: -1.9832 REMARK 3 L13: -0.3357 L23: -0.9929 REMARK 3 S TENSOR REMARK 3 S11: 0.2112 S12: 0.0825 S13: 1.4772 REMARK 3 S21: -0.4586 S22: -0.1070 S23: -0.9127 REMARK 3 S31: -0.8259 S32: 1.0755 S33: 0.0427 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1930 -7.5575 -26.6689 REMARK 3 T TENSOR REMARK 3 T11: 0.6882 T22: 0.5212 REMARK 3 T33: 0.9174 T12: 0.0678 REMARK 3 T13: -0.2246 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 1.8455 L22: 0.2538 REMARK 3 L33: 5.1147 L12: 0.0172 REMARK 3 L13: 0.5064 L23: 1.1482 REMARK 3 S TENSOR REMARK 3 S11: -0.2088 S12: -0.6403 S13: 0.5957 REMARK 3 S21: -0.5330 S22: 0.2891 S23: 0.6043 REMARK 3 S31: 0.0449 S32: -0.6248 S33: -0.0262 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1405 -1.4510 15.0908 REMARK 3 T TENSOR REMARK 3 T11: 0.5014 T22: 0.3900 REMARK 3 T33: 0.5144 T12: 0.1130 REMARK 3 T13: -0.0943 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 1.3001 L22: 1.9426 REMARK 3 L33: 1.5381 L12: -0.2196 REMARK 3 L13: 1.3128 L23: -0.9088 REMARK 3 S TENSOR REMARK 3 S11: -0.2132 S12: 0.1055 S13: 0.7435 REMARK 3 S21: -0.0199 S22: -0.1615 S23: -0.5446 REMARK 3 S31: -0.0279 S32: 0.0937 S33: -0.0418 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9021 -8.0200 16.7738 REMARK 3 T TENSOR REMARK 3 T11: 0.5838 T22: 0.3343 REMARK 3 T33: 0.4345 T12: -0.0166 REMARK 3 T13: -0.1863 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 0.6975 L22: 0.1873 REMARK 3 L33: 0.9875 L12: 0.1431 REMARK 3 L13: -0.7167 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.2184 S12: -0.0287 S13: 0.3905 REMARK 3 S21: 0.9326 S22: -0.1844 S23: -0.3329 REMARK 3 S31: -0.3920 S32: 0.0204 S33: -0.1877 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 281 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2208 -14.9051 9.4491 REMARK 3 T TENSOR REMARK 3 T11: 0.3163 T22: 0.3827 REMARK 3 T33: 0.3825 T12: 0.0305 REMARK 3 T13: -0.1052 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.2084 L22: 2.6077 REMARK 3 L33: 1.4385 L12: 0.2732 REMARK 3 L13: 0.9911 L23: 1.2436 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.0652 S13: -0.1234 REMARK 3 S21: 1.2155 S22: -0.0950 S23: 0.2299 REMARK 3 S31: 0.6594 S32: -0.1375 S33: -0.1042 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 294 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5447 -15.4736 -2.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.4848 T22: 0.4609 REMARK 3 T33: 0.2921 T12: -0.0229 REMARK 3 T13: -0.0872 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.2675 L22: 3.0573 REMARK 3 L33: 8.3081 L12: 1.6903 REMARK 3 L13: -0.8176 L23: -2.9803 REMARK 3 S TENSOR REMARK 3 S11: -0.1321 S12: -0.1894 S13: -0.4323 REMARK 3 S21: 0.0283 S22: -0.2117 S23: -0.8928 REMARK 3 S31: 0.4141 S32: 0.0069 S33: -0.0713 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 299 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5703 -3.3699 -7.8161 REMARK 3 T TENSOR REMARK 3 T11: 0.8229 T22: -0.1467 REMARK 3 T33: 0.5256 T12: -0.3140 REMARK 3 T13: -0.0836 T23: 0.3749 REMARK 3 L TENSOR REMARK 3 L11: 1.2391 L22: 0.0174 REMARK 3 L33: 1.0859 L12: -0.1729 REMARK 3 L13: -1.1586 L23: 0.1524 REMARK 3 S TENSOR REMARK 3 S11: 0.1992 S12: -0.1907 S13: 0.6535 REMARK 3 S21: -0.0628 S22: 0.2188 S23: 0.3014 REMARK 3 S31: -0.4409 S32: 0.6623 S33: 0.4213 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 304 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2776 0.9866 1.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.3584 T22: 0.3933 REMARK 3 T33: 0.7332 T12: -0.0683 REMARK 3 T13: 0.0752 T23: 0.1815 REMARK 3 L TENSOR REMARK 3 L11: 1.9495 L22: 1.9241 REMARK 3 L33: 5.0268 L12: -1.3650 REMARK 3 L13: 0.2923 L23: 1.3101 REMARK 3 S TENSOR REMARK 3 S11: 0.6165 S12: 0.3623 S13: 0.4704 REMARK 3 S21: -0.3041 S22: -0.2808 S23: -1.0047 REMARK 3 S31: -0.8528 S32: 0.3242 S33: -0.1117 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 309 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9577 -1.8279 4.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.4568 REMARK 3 T33: 0.6259 T12: 0.0583 REMARK 3 T13: -0.2212 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.0114 L22: 2.3631 REMARK 3 L33: 2.0008 L12: -0.2266 REMARK 3 L13: -1.7577 L23: 2.8678 REMARK 3 S TENSOR REMARK 3 S11: 0.1998 S12: -0.2876 S13: 0.1879 REMARK 3 S21: -0.4948 S22: 0.2404 S23: 0.1021 REMARK 3 S31: -0.6951 S32: -1.2823 S33: 1.0360 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 316 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8279 -6.8168 2.9872 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.3412 REMARK 3 T33: 0.4073 T12: -0.0495 REMARK 3 T13: -0.0753 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.2986 L22: 0.4056 REMARK 3 L33: 1.7582 L12: -0.3015 REMARK 3 L13: 0.5912 L23: -0.8348 REMARK 3 S TENSOR REMARK 3 S11: -0.6450 S12: 0.0970 S13: 0.8512 REMARK 3 S21: 0.3099 S22: -0.4484 S23: -0.3269 REMARK 3 S31: -0.9457 S32: 0.6770 S33: -0.2078 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 327 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2427 -13.8089 9.9440 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.3854 REMARK 3 T33: 0.4790 T12: -0.0960 REMARK 3 T13: -0.1888 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 8.0122 L22: 1.7480 REMARK 3 L33: 1.9966 L12: 3.7334 REMARK 3 L13: 2.0047 L23: -5.4466 REMARK 3 S TENSOR REMARK 3 S11: -1.1996 S12: 0.1156 S13: -1.6271 REMARK 3 S21: -0.4055 S22: -1.2306 S23: -0.3990 REMARK 3 S31: 1.0609 S32: 1.0832 S33: -1.2267 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 333 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7785 -24.0753 17.5592 REMARK 3 T TENSOR REMARK 3 T11: 0.7835 T22: 0.4978 REMARK 3 T33: 0.6443 T12: 0.1572 REMARK 3 T13: -0.0428 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.7517 L22: 0.4707 REMARK 3 L33: 3.1659 L12: 0.5579 REMARK 3 L13: 1.5781 L23: 0.6322 REMARK 3 S TENSOR REMARK 3 S11: 0.1643 S12: 0.8787 S13: -0.1246 REMARK 3 S21: 0.9832 S22: 0.8869 S23: -0.0350 REMARK 3 S31: -0.0783 S32: 0.5358 S33: 0.0091 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4788 -16.3732 -7.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.4396 T22: 0.6764 REMARK 3 T33: 0.4529 T12: 0.0427 REMARK 3 T13: -0.1342 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: -0.0277 L22: 0.7172 REMARK 3 L33: 1.3643 L12: 0.3367 REMARK 3 L13: 0.2935 L23: 0.1561 REMARK 3 S TENSOR REMARK 3 S11: 0.1117 S12: -0.0918 S13: -0.2792 REMARK 3 S21: -0.0954 S22: 0.0512 S23: 0.1073 REMARK 3 S31: 0.0934 S32: -0.7537 S33: -0.0515 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8538 -17.1285 24.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.6156 T22: 0.5521 REMARK 3 T33: 0.4894 T12: -0.0586 REMARK 3 T13: -0.1414 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.6895 L22: 1.5847 REMARK 3 L33: 1.3412 L12: -1.1765 REMARK 3 L13: 0.7758 L23: -1.4226 REMARK 3 S TENSOR REMARK 3 S11: -0.3447 S12: -0.3474 S13: -0.5837 REMARK 3 S21: 1.3762 S22: 0.0509 S23: -0.2908 REMARK 3 S31: -0.6594 S32: 0.3401 S33: -0.1424 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6884 -14.3847 24.1878 REMARK 3 T TENSOR REMARK 3 T11: 0.7897 T22: 0.5759 REMARK 3 T33: 0.5178 T12: -0.0042 REMARK 3 T13: -0.2388 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 3.9684 L22: 2.2998 REMARK 3 L33: 2.2539 L12: 1.3734 REMARK 3 L13: 0.9034 L23: -1.6400 REMARK 3 S TENSOR REMARK 3 S11: 0.3126 S12: -0.9675 S13: 0.5760 REMARK 3 S21: 0.7346 S22: -0.2514 S23: -0.1378 REMARK 3 S31: -0.3847 S32: -1.3520 S33: -0.0207 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7273 -17.4975 -1.1829 REMARK 3 T TENSOR REMARK 3 T11: 0.5290 T22: 0.5610 REMARK 3 T33: 0.4518 T12: -0.0947 REMARK 3 T13: -0.1332 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 1.1362 L22: 0.3210 REMARK 3 L33: 1.3362 L12: -0.3867 REMARK 3 L13: -0.3631 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.0819 S12: -0.4501 S13: 0.0290 REMARK 3 S21: 0.2949 S22: 0.2141 S23: 0.1378 REMARK 3 S31: 0.1648 S32: -1.0002 S33: -0.0458 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 263 THROUGH 340 OR REMARK 3 (RESID 341 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 342 REMARK 3 THROUGH 345)) REMARK 3 SELECTION : (CHAIN B AND RESID 263 THROUGH 345) REMARK 3 ATOM PAIRS NUMBER : 776 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8163 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.781 REMARK 200 RESOLUTION RANGE LOW (A) : 35.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11620 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37420 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1CIT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA ACETATE (PH 4.7), 200 MM REMARK 280 NACL, 10 MM MGCL2, 5 MM LI2SO4, 5 MM DTT, AND 15-19% PEG4K (W/V), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.15750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 341 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 313 OP1 DG D 16 2.15 REMARK 500 OD1 ASP A 308 N ARG A 311 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 301 -142.99 -115.24 REMARK 500 ASP A 336 -125.24 59.30 REMARK 500 ALA B 301 -142.32 -116.25 REMARK 500 ASN B 304 21.86 -144.45 REMARK 500 ASP B 336 -127.55 59.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 263 SG REMARK 620 2 CYS A 266 SG 108.8 REMARK 620 3 CYS A 280 SG 111.0 98.7 REMARK 620 4 CYS A 283 SG 116.6 108.5 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 299 SG REMARK 620 2 CYS A 305 SG 114.8 REMARK 620 3 CYS A 315 SG 109.4 99.5 REMARK 620 4 CYS A 318 SG 111.1 108.3 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 263 SG REMARK 620 2 CYS B 266 SG 107.3 REMARK 620 3 CYS B 280 SG 114.6 111.2 REMARK 620 4 CYS B 283 SG 113.6 107.3 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 299 SG REMARK 620 2 CYS B 305 SG 104.7 REMARK 620 3 CYS B 315 SG 111.7 102.1 REMARK 620 4 CYS B 318 SG 113.9 108.4 114.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 DBREF 6L6L A 262 346 UNP F1D8N6 F1D8N6_HUMAN 262 346 DBREF 6L6L B 262 346 UNP F1D8N6 F1D8N6_HUMAN 262 346 DBREF 6L6L C 1 21 PDB 6L6L 6L6L 1 21 DBREF 6L6L D 1 21 PDB 6L6L 6L6L 1 21 SEQRES 1 A 85 LEU CYS ALA VAL CYS GLY ASP ASN ALA ALA CYS GLN HIS SEQRES 2 A 85 TYR GLY VAL ARG THR CYS GLU GLY CYS LYS GLY PHE PHE SEQRES 3 A 85 LYS ARG THR VAL GLN LYS ASN ALA LYS TYR VAL CYS LEU SEQRES 4 A 85 ALA ASN LYS ASN CYS PRO VAL ASP LYS ARG ARG ARG ASN SEQRES 5 A 85 ARG CYS GLN TYR CYS ARG PHE GLN LYS CYS LEU ALA VAL SEQRES 6 A 85 GLY MET VAL LYS GLU VAL VAL ARG THR ASP SER LEU LYS SEQRES 7 A 85 GLY ARG ARG GLY ARG LEU PRO SEQRES 1 B 85 LEU CYS ALA VAL CYS GLY ASP ASN ALA ALA CYS GLN HIS SEQRES 2 B 85 TYR GLY VAL ARG THR CYS GLU GLY CYS LYS GLY PHE PHE SEQRES 3 B 85 LYS ARG THR VAL GLN LYS ASN ALA LYS TYR VAL CYS LEU SEQRES 4 B 85 ALA ASN LYS ASN CYS PRO VAL ASP LYS ARG ARG ARG ASN SEQRES 5 B 85 ARG CYS GLN TYR CYS ARG PHE GLN LYS CYS LEU ALA VAL SEQRES 6 B 85 GLY MET VAL LYS GLU VAL VAL ARG THR ASP SER LEU LYS SEQRES 7 B 85 GLY ARG ARG GLY ARG LEU PRO SEQRES 1 C 21 DA DA DA DG DG DT DC DA DA DA DC DT DG SEQRES 2 C 21 DT DG DA DC DC DT DA DT SEQRES 1 D 21 DT DA DT DA DG DG DT DC DA DC DA DG DT SEQRES 2 D 21 DT DT DG DA DC DC DT DT HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *24(H2 O) HELIX 1 AA1 CYS A 280 ASN A 294 1 15 HELIX 2 AA2 ARG A 311 ARG A 314 5 4 HELIX 3 AA3 CYS A 315 GLY A 327 1 13 HELIX 4 AA4 VAL A 329 VAL A 333 5 5 HELIX 5 AA5 THR A 335 LYS A 339 5 5 HELIX 6 AA6 CYS B 280 ASN B 294 1 15 HELIX 7 AA7 ARG B 311 ARG B 314 5 4 HELIX 8 AA8 CYS B 315 GLY B 327 1 13 HELIX 9 AA9 VAL B 329 VAL B 333 5 5 HELIX 10 AB1 THR B 335 LYS B 339 5 5 SHEET 1 AA1 2 GLN A 273 HIS A 274 0 SHEET 2 AA1 2 VAL A 277 ARG A 278 -1 O VAL A 277 N HIS A 274 SHEET 1 AA2 2 CYS B 272 HIS B 274 0 SHEET 2 AA2 2 VAL B 277 THR B 279 -1 O VAL B 277 N HIS B 274 LINK SG CYS A 263 ZN ZN A 401 1555 1555 2.63 LINK SG CYS A 266 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 299 ZN ZN A 402 1555 1555 2.40 LINK SG CYS A 305 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 315 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 318 ZN ZN A 402 1555 1555 2.40 LINK SG CYS B 263 ZN ZN B 401 1555 1555 2.94 LINK SG CYS B 266 ZN ZN B 401 1555 1555 2.57 LINK SG CYS B 280 ZN ZN B 401 1555 1555 2.70 LINK SG CYS B 283 ZN ZN B 401 1555 1555 2.39 LINK SG CYS B 299 ZN ZN B 402 1555 1555 2.32 LINK SG CYS B 305 ZN ZN B 402 1555 1555 2.35 LINK SG CYS B 315 ZN ZN B 402 1555 1555 2.30 LINK SG CYS B 318 ZN ZN B 402 1555 1555 2.39 SITE 1 AC1 4 CYS A 263 CYS A 266 CYS A 280 CYS A 283 SITE 1 AC2 4 CYS A 299 CYS A 305 CYS A 315 CYS A 318 SITE 1 AC3 4 CYS B 263 CYS B 266 CYS B 280 CYS B 283 SITE 1 AC4 4 CYS B 299 CYS B 305 CYS B 315 CYS B 318 CRYST1 42.405 64.315 60.776 90.00 96.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023582 0.000000 0.002830 0.00000 SCALE2 0.000000 0.015548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016572 0.00000