HEADER HYDROLASE 03-NOV-19 6L7Y TITLE CRYSTAL STRUCTURE OF CET1 FROM TRYPANOSOMA CRUZI IN COMPLEX WITH #466 TITLE 2 LIGAND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA_TRIPASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI STRAIN CL BRENER; SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053508479.390; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MRNA CAPPING, RNA TRIPHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KUWABARA,K.HO REVDAT 3 22-NOV-23 6L7Y 1 REMARK REVDAT 2 15-JUL-20 6L7Y 1 JRNL REVDAT 1 03-JUN-20 6L7Y 0 JRNL AUTH Y.TAKAGI,N.KUWABARA,T.T.DANG,K.FURUKAWA,C.K.HO JRNL TITL CRYSTAL STRUCTURES OF THE RNA TRIPHOSPHATASE FROMTRYPANOSOMA JRNL TITL 2 CRUZIPROVIDE INSIGHTS INTO HOW IT RECOGNIZES THE 5'-END OF JRNL TITL 3 THE RNA SUBSTRATE. JRNL REF J.BIOL.CHEM. V. 295 9076 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32381506 JRNL DOI 10.1074/JBC.RA119.011811 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4000 - 4.2900 1.00 3004 154 0.1652 0.2001 REMARK 3 2 4.2900 - 3.4000 1.00 2906 154 0.1871 0.2352 REMARK 3 3 3.4000 - 2.9700 0.99 2881 141 0.2461 0.2917 REMARK 3 4 2.9700 - 2.7000 0.99 2854 157 0.2888 0.3102 REMARK 3 5 2.7000 - 2.5100 0.98 2840 124 0.3458 0.4233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.435 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1677 REMARK 3 ANGLE : 0.627 2271 REMARK 3 CHIRALITY : 0.043 251 REMARK 3 PLANARITY : 0.003 291 REMARK 3 DIHEDRAL : 8.995 1386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1339 104.1114 -11.8223 REMARK 3 T TENSOR REMARK 3 T11: 1.1793 T22: 0.8142 REMARK 3 T33: 0.4515 T12: -0.0831 REMARK 3 T13: -0.0809 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.4352 L22: 6.7686 REMARK 3 L33: 6.4285 L12: 0.6461 REMARK 3 L13: -0.8009 L23: 3.6122 REMARK 3 S TENSOR REMARK 3 S11: 0.3214 S12: 1.4092 S13: -0.3993 REMARK 3 S21: -0.6942 S22: -0.4950 S23: 0.1909 REMARK 3 S31: 0.1098 S32: 0.6217 S33: 0.1778 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3709 117.3433 -4.8292 REMARK 3 T TENSOR REMARK 3 T11: 0.6926 T22: 0.6526 REMARK 3 T33: 0.4604 T12: 0.0313 REMARK 3 T13: -0.0144 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.8587 L22: 7.7993 REMARK 3 L33: 3.7099 L12: -5.0262 REMARK 3 L13: 0.9174 L23: -4.0422 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.0826 S13: 0.1117 REMARK 3 S21: -0.3817 S22: -0.0962 S23: 0.0313 REMARK 3 S31: -0.6392 S32: -0.3534 S33: 0.1300 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1309 110.1007 9.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.6956 T22: 0.5771 REMARK 3 T33: 0.6027 T12: 0.0385 REMARK 3 T13: -0.0784 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 7.6131 L22: 8.0246 REMARK 3 L33: 5.1589 L12: 4.8159 REMARK 3 L13: -1.9167 L23: -1.9377 REMARK 3 S TENSOR REMARK 3 S11: -0.2543 S12: -0.1717 S13: -0.2567 REMARK 3 S21: 0.2896 S22: 0.0984 S23: -0.5360 REMARK 3 S31: 0.1977 S32: 0.1884 S33: 0.1054 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0844 125.8538 4.6994 REMARK 3 T TENSOR REMARK 3 T11: 0.8641 T22: 0.7809 REMARK 3 T33: 0.8190 T12: -0.1610 REMARK 3 T13: 0.1424 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 4.7559 L22: 3.3160 REMARK 3 L33: 5.3022 L12: -1.9827 REMARK 3 L13: -2.9540 L23: 0.2944 REMARK 3 S TENSOR REMARK 3 S11: 0.5115 S12: 0.4176 S13: 0.0586 REMARK 3 S21: -0.8336 S22: -0.4062 S23: -0.9640 REMARK 3 S31: -0.7034 S32: 0.8177 S33: -0.1235 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2614 132.8598 12.8749 REMARK 3 T TENSOR REMARK 3 T11: 0.7142 T22: 0.5252 REMARK 3 T33: 0.6443 T12: -0.0143 REMARK 3 T13: 0.1001 T23: -0.1077 REMARK 3 L TENSOR REMARK 3 L11: 3.0714 L22: 9.1452 REMARK 3 L33: 7.4008 L12: 2.9254 REMARK 3 L13: 4.4583 L23: 1.3380 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: 0.2646 S13: -0.0337 REMARK 3 S21: 0.0618 S22: 0.4411 S23: -0.9948 REMARK 3 S31: -0.2825 S32: 0.6392 S33: -0.5566 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5222 114.2766 1.8823 REMARK 3 T TENSOR REMARK 3 T11: 0.6260 T22: 0.5915 REMARK 3 T33: 0.5032 T12: -0.0384 REMARK 3 T13: 0.0178 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.2638 L22: 2.2055 REMARK 3 L33: 0.9292 L12: -0.3503 REMARK 3 L13: -0.1924 L23: -0.3213 REMARK 3 S TENSOR REMARK 3 S11: 0.1717 S12: 0.3266 S13: -0.2413 REMARK 3 S21: -0.2232 S22: -0.1513 S23: 0.2804 REMARK 3 S31: 0.0950 S32: 0.0889 S33: -0.0014 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5025 129.0523 9.9328 REMARK 3 T TENSOR REMARK 3 T11: 0.6543 T22: 0.5816 REMARK 3 T33: 0.4965 T12: -0.1944 REMARK 3 T13: 0.0018 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 2.7045 L22: 2.5997 REMARK 3 L33: 4.8463 L12: -1.4512 REMARK 3 L13: -2.2170 L23: -0.7510 REMARK 3 S TENSOR REMARK 3 S11: -0.2826 S12: -0.3128 S13: 0.0568 REMARK 3 S21: -0.3126 S22: 0.3682 S23: -0.2003 REMARK 3 S31: -0.3807 S32: 0.2127 S33: -0.0312 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6527 119.5153 3.4241 REMARK 3 T TENSOR REMARK 3 T11: 0.5796 T22: 0.6253 REMARK 3 T33: 0.6542 T12: -0.2019 REMARK 3 T13: 0.0324 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 3.4967 L22: 5.8263 REMARK 3 L33: 3.4377 L12: -2.2856 REMARK 3 L13: -2.7229 L23: 4.2244 REMARK 3 S TENSOR REMARK 3 S11: -0.1800 S12: 0.5314 S13: 0.8320 REMARK 3 S21: -0.2264 S22: 0.1006 S23: -0.4845 REMARK 3 S31: 0.8252 S32: 0.1226 S33: -0.2280 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1537 118.9178 -0.8394 REMARK 3 T TENSOR REMARK 3 T11: 0.7417 T22: 0.5719 REMARK 3 T33: 0.6246 T12: -0.0200 REMARK 3 T13: 0.0398 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.2205 L22: 2.7917 REMARK 3 L33: 4.1737 L12: 0.2258 REMARK 3 L13: -0.6079 L23: 1.1877 REMARK 3 S TENSOR REMARK 3 S11: -0.1231 S12: 0.0092 S13: 0.3759 REMARK 3 S21: -0.1626 S22: 0.4385 S23: 0.1723 REMARK 3 S31: -1.0634 S32: -0.3416 S33: -0.3823 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7096 108.2164 -6.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.7374 T22: 0.6595 REMARK 3 T33: 0.5109 T12: 0.0106 REMARK 3 T13: 0.1447 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 7.4898 L22: 4.6778 REMARK 3 L33: 2.6520 L12: -2.3401 REMARK 3 L13: 3.9806 L23: -2.7109 REMARK 3 S TENSOR REMARK 3 S11: -0.1828 S12: 1.1253 S13: -0.1275 REMARK 3 S21: -0.7371 S22: 0.0967 S23: -0.4991 REMARK 3 S31: 0.8063 S32: 0.7477 S33: 0.0350 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6L7V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES-NAOH (PH 7.5), AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.83267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.91633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.91633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.83267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 THR A 242 REMARK 465 ASN A 243 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 -76.96 -81.22 REMARK 500 THR A 130 -84.48 -111.73 REMARK 500 LEU A 222 95.16 -68.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JJY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 DBREF 6L7Y A 18 243 UNP Q4E2I1 Q4E2I1_TRYCC 18 243 SEQADV 6L7Y GLY A 14 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7Y PRO A 15 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7Y GLY A 16 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7Y SER A 17 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7Y A UNP Q4E2I1 ASP 55 DELETION SEQADV 6L7Y A UNP Q4E2I1 ALA 56 DELETION SEQADV 6L7Y A UNP Q4E2I1 LEU 57 DELETION SEQADV 6L7Y A UNP Q4E2I1 ARG 58 DELETION SEQADV 6L7Y A UNP Q4E2I1 GLU 59 DELETION SEQADV 6L7Y A UNP Q4E2I1 ASN 60 DELETION SEQADV 6L7Y A UNP Q4E2I1 THR 61 DELETION SEQADV 6L7Y A UNP Q4E2I1 SER 62 DELETION SEQADV 6L7Y A UNP Q4E2I1 ASP 63 DELETION SEQADV 6L7Y A UNP Q4E2I1 GLN 64 DELETION SEQADV 6L7Y A UNP Q4E2I1 ASN 65 DELETION SEQADV 6L7Y A UNP Q4E2I1 GLY 66 DELETION SEQADV 6L7Y A UNP Q4E2I1 ALA 67 DELETION SEQADV 6L7Y A UNP Q4E2I1 GLN 68 DELETION SEQADV 6L7Y A UNP Q4E2I1 THR 69 DELETION SEQADV 6L7Y A UNP Q4E2I1 ASN 70 DELETION SEQADV 6L7Y A UNP Q4E2I1 GLY 71 DELETION SEQADV 6L7Y A UNP Q4E2I1 LEU 72 DELETION SEQADV 6L7Y A UNP Q4E2I1 ARG 73 DELETION SEQADV 6L7Y A UNP Q4E2I1 ILE 74 DELETION SEQADV 6L7Y A UNP Q4E2I1 VAL 75 DELETION SEQADV 6L7Y ASN A 126 UNP Q4E2I1 ASP 126 ENGINEERED MUTATION SEQRES 1 A 209 GLY PRO GLY SER ASP ALA GLU GLN ARG ALA VAL ALA LYS SEQRES 2 A 209 ALA LEU PHE ASP ALA VAL ASN LYS HIS LEU SER ASN PRO SEQRES 3 A 209 PHE ILE GLU VAL GLU MET ARG LEU GLY GLN PHE LYS VAL SEQRES 4 A 209 GLU GLU ASP ALA ASN PHE THR ALA CYS VAL SER THR GLU SEQRES 5 A 209 ASP TYR GLU ARG ILE LYS THR TYR LEU MET THR GLU MET SEQRES 6 A 209 GLU ASN SER SER MET THR ARG SER VAL THR HIS ASP VAL SEQRES 7 A 209 SER LEU ARG GLY TRP ARG HIS THR TYR ALA THR ASP GLU SEQRES 8 A 209 ASN GLY ASN PRO THR ARG CYS VAL SER ILE VAL ARG LYS SEQRES 9 A 209 LYS ARG LEU PHE VAL LYS ASN ILE VAL VAL PRO LEU GLY SEQRES 10 A 209 ALA TYR ASN LEU ARG PHE ALA VAL SER THR GLU THR PRO SEQRES 11 A 209 GLY ASP LEU ARG PHE SER GLY ALA GLY PRO ARG ALA GLY SEQRES 12 A 209 HIS THR ARG LEU LYS ASP ARG LEU SER ILE THR ASP GLY SEQRES 13 A 209 MET PHE ARG TYR ASP MET THR GLN VAL THR GLU LYS GLY SEQRES 14 A 209 VAL LEU MET HIS GLU VAL GLU ILE GLU GLY VAL PHE SER SEQRES 15 A 209 SER HIS GLU LYS GLN LEU THR GLU SER TRP LEU GLU GLU SEQRES 16 A 209 LEU LEU ARG ARG ALA MET ARG LEU ALA THR LEU ARG THR SEQRES 17 A 209 ASN HET JJY A 301 16 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HETNAM JJY 3,4,6,7-TETRAHYDROACRIDINE-1,8(2H,5H)-DIONE HETNAM SO4 SULFATE ION FORMUL 2 JJY C13 H13 N O2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *8(H2 O) HELIX 1 AA1 ASP A 18 ASN A 33 1 16 HELIX 2 AA2 LYS A 34 LEU A 36 5 3 HELIX 3 AA3 SER A 84 MET A 99 1 16 HELIX 4 AA4 ASP A 166 GLY A 173 5 8 HELIX 5 AA5 SER A 217 LEU A 222 1 6 HELIX 6 AA6 THR A 223 LEU A 240 1 18 SHEET 1 AA110 PHE A 79 THR A 80 0 SHEET 2 AA110 ILE A 41 PHE A 50 -1 N GLN A 49 O THR A 80 SHEET 3 AA110 VAL A 204 GLY A 213 -1 O ILE A 211 N MET A 45 SHEET 4 AA110 PHE A 192 GLU A 201 -1 N ASP A 195 O GLU A 210 SHEET 5 AA110 THR A 179 ASP A 189 -1 N LEU A 185 O MET A 196 SHEET 6 AA110 SER A 103 LEU A 114 -1 N ASP A 111 O ARG A 180 SHEET 7 AA110 TRP A 117 THR A 123 -1 O HIS A 119 N VAL A 112 SHEET 8 AA110 PRO A 129 ILE A 146 -1 O VAL A 133 N THR A 120 SHEET 9 AA110 ASN A 154 PRO A 164 -1 O PHE A 157 N LYS A 144 SHEET 10 AA110 ILE A 41 PHE A 50 -1 N GLU A 42 O SER A 160 SITE 1 AC1 7 LEU A 114 TRP A 117 HIS A 119 ILE A 135 SITE 2 AC1 7 GLY A 165 ASP A 166 PHE A 169 SITE 1 AC2 3 ASN A 78 PHE A 79 ARG A 156 SITE 1 AC3 2 LYS A 144 ASN A 145 SITE 1 AC4 3 ASN A 78 ASN A 145 ARG A 156 SITE 1 AC5 4 ASP A 111 ARG A 118 LYS A 182 ARG A 184 CRYST1 115.943 115.943 56.749 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008625 0.004980 0.000000 0.00000 SCALE2 0.000000 0.009959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017621 0.00000