HEADER TRANSCRIPTION 08-NOV-19 6L96 TITLE STRUCTURE OF PPARALPHA-LBD/PEMAFIBRATE/SRC1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-ALPHA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SRC1 COACTIVATOR PEPTIDE; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARA, NR1C1, PPAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.KAWASAKI,A.KAMBE,Y.YAMAMOTO,S.ARULMOZHIRA,S.ITO,Y.NAKAGAWA, AUTHOR 2 H.TOKIWA,S.NAKANO,H.SHIMANO REVDAT 3 22-NOV-23 6L96 1 REMARK REVDAT 2 29-JAN-20 6L96 1 JRNL REVDAT 1 15-JAN-20 6L96 0 JRNL AUTH M.KAWASAKI,A.KAMBE,Y.YAMAMOTO,S.ARULMOZHIRAJA,S.ITO, JRNL AUTH 2 Y.NAKAGAWA,H.TOKIWA,S.NAKANO,H.SHIMANO JRNL TITL ELUCIDATION OF MOLECULAR MECHANISM OF A SELECTIVE PPAR ALPHA JRNL TITL 2 MODULATOR, PEMAFIBRATE, THROUGH COMBINATIONAL APPROACHES OF JRNL TITL 3 X-RAY CRYSTALLOGRAPHY, THERMODYNAMIC ANALYSIS, AND JRNL TITL 4 FIRST-PRINCIPLE CALCULATIONS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 31935812 JRNL DOI 10.3390/IJMS21010361 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 851 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.493 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.379 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4275 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4105 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5760 ; 1.642 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9524 ; 1.193 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;35.668 ;23.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 790 ;21.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4644 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 849 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2071 ; 8.613 ;10.768 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2070 ; 8.609 ;10.767 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2580 ;12.732 ;16.132 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2581 ;12.730 ;16.133 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2201 ; 8.836 ;11.157 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2202 ; 8.835 ;11.159 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3179 ;13.364 ;16.502 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4819 ;16.244 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4820 ;16.243 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 273 B 10 273 8002 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6L96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22457 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5HYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM SULFATE AND 0.1M BIS REMARK 280 -TRIS-HCL (PH 6.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.17367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.34733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 118.34733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.17367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 195 REMARK 465 ILE A 196 REMARK 465 GLU A 197 REMARK 465 ASP A 198 REMARK 465 SER A 199 REMARK 465 GLU A 200 REMARK 465 THR A 201 REMARK 465 ALA A 202 REMARK 465 ALA A 256A REMARK 465 LYS A 256B REMARK 465 LEU A 256C REMARK 465 VAL A 256D REMARK 465 ALA A 256E REMARK 465 ASN A 256F REMARK 465 GLY A 256G REMARK 465 ILE A 256H REMARK 465 GLN A 256I REMARK 465 ASN A 256J REMARK 465 LYS A 256K REMARK 465 TYR A 468 REMARK 465 ASP B 194 REMARK 465 ILE B 195 REMARK 465 GLU B 196 REMARK 465 ASP B 197 REMARK 465 SER B 198 REMARK 465 GLU B 199 REMARK 465 THR B 200 REMARK 465 ALA B 201 REMARK 465 ASP B 202 REMARK 465 ALA B 256 REMARK 465 LYS B 257 REMARK 465 LEU B 258 REMARK 465 VAL B 259 REMARK 465 ALA B 260 REMARK 465 ASN B 261 REMARK 465 GLY B 262 REMARK 465 ILE B 263 REMARK 465 GLN B 264 REMARK 465 ASN B 265 REMARK 465 LYS B 266 REMARK 465 TYR B 468 REMARK 465 GLU C 696 REMARK 465 GLY C 697 REMARK 465 SER C 698 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 271 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 688 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET B 249 SD MET B 249 6555 1.56 REMARK 500 SD MET B 249 CE MET B 249 6555 1.85 REMARK 500 CG MET B 249 CE MET B 249 6555 1.88 REMARK 500 O GLU B 439 OE1 GLN B 442 4555 2.10 REMARK 500 CB MET B 249 CE MET B 249 6555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 231 28.75 37.38 REMARK 500 LYS A 233 -101.68 -93.73 REMARK 500 ALA A 234 56.42 -162.56 REMARK 500 ASN A 236 -67.80 -136.98 REMARK 500 HIS A 243 -89.31 -97.38 REMARK 500 MET A 250 7.40 -66.63 REMARK 500 LEU A 255 79.12 -158.39 REMARK 500 ALA A 333 61.35 38.59 REMARK 500 LEU A 392 -84.95 -85.78 REMARK 500 ARG A 465 119.00 -39.83 REMARK 500 SER B 230 26.91 36.79 REMARK 500 ALA B 233 74.54 -68.63 REMARK 500 SER B 234 -34.93 -37.78 REMARK 500 ASN B 235 -61.45 -140.21 REMARK 500 HIS B 242 -89.90 -98.38 REMARK 500 MET B 249 -14.09 -45.79 REMARK 500 LEU B 392 -81.71 -87.08 REMARK 500 ARG B 465 118.31 -34.38 REMARK 500 HIS C 687 71.65 55.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P7F A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P7F B 501 DBREF 6L96 A 195 468 UNP Q07869 PPARA_HUMAN 194 468 DBREF 6L96 B 194 468 UNP Q07869 PPARA_HUMAN 194 468 DBREF 6L96 C 686 698 PDB 6L96 6L96 686 698 SEQRES 1 A 275 ASP ILE GLU ASP SER GLU THR ALA ASP LEU LYS SER LEU SEQRES 2 A 275 ALA LYS ARG ILE TYR GLU ALA TYR LEU LYS ASN PHE ASN SEQRES 3 A 275 MET ASN LYS VAL LYS ALA ARG VAL ILE LEU SER GLY LYS SEQRES 4 A 275 ALA SER ASN ASN PRO PRO PHE VAL ILE HIS ASP MET GLU SEQRES 5 A 275 THR LEU CYS MET ALA GLU LYS THR LEU VAL ALA LYS LEU SEQRES 6 A 275 VAL ALA ASN GLY ILE GLN ASN LYS GLU ALA GLU VAL ARG SEQRES 7 A 275 ILE PHE HIS CYS CYS GLN CYS THR SER VAL GLU THR VAL SEQRES 8 A 275 THR GLU LEU THR GLU PHE ALA LYS ALA ILE PRO GLY PHE SEQRES 9 A 275 ALA ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 A 275 TYR GLY VAL TYR GLU ALA ILE PHE ALA MET LEU SER SER SEQRES 11 A 275 VAL MET ASN LYS ASP GLY MET LEU VAL ALA TYR GLY ASN SEQRES 12 A 275 GLY PHE ILE THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 A 275 PRO PHE CYS ASP ILE MET GLU PRO LYS PHE ASP PHE ALA SEQRES 14 A 275 MET LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP ILE SEQRES 15 A 275 SER LEU PHE VAL ALA ALA ILE ILE CYS CYS GLY ASP ARG SEQRES 16 A 275 PRO GLY LEU LEU ASN VAL GLY HIS ILE GLU LYS MET GLN SEQRES 17 A 275 GLU GLY ILE VAL HIS VAL LEU ARG LEU HIS LEU GLN SER SEQRES 18 A 275 ASN HIS PRO ASP ASP ILE PHE LEU PHE PRO LYS LEU LEU SEQRES 19 A 275 GLN LYS MET ALA ASP LEU ARG GLN LEU VAL THR GLU HIS SEQRES 20 A 275 ALA GLN LEU VAL GLN ILE ILE LYS LYS THR GLU SER ASP SEQRES 21 A 275 ALA ALA LEU HIS PRO LEU LEU GLN GLU ILE TYR ARG ASP SEQRES 22 A 275 MET TYR SEQRES 1 B 275 ASP ILE GLU ASP SER GLU THR ALA ASP LEU LYS SER LEU SEQRES 2 B 275 ALA LYS ARG ILE TYR GLU ALA TYR LEU LYS ASN PHE ASN SEQRES 3 B 275 MET ASN LYS VAL LYS ALA ARG VAL ILE LEU SER GLY LYS SEQRES 4 B 275 ALA SER ASN ASN PRO PRO PHE VAL ILE HIS ASP MET GLU SEQRES 5 B 275 THR LEU CYS MET ALA GLU LYS THR LEU VAL ALA LYS LEU SEQRES 6 B 275 VAL ALA ASN GLY ILE GLN ASN LYS GLU ALA GLU VAL ARG SEQRES 7 B 275 ILE PHE HIS CYS CYS GLN CYS THR SER VAL GLU THR VAL SEQRES 8 B 275 THR GLU LEU THR GLU PHE ALA LYS ALA ILE PRO GLY PHE SEQRES 9 B 275 ALA ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 B 275 TYR GLY VAL TYR GLU ALA ILE PHE ALA MET LEU SER SER SEQRES 11 B 275 VAL MET ASN LYS ASP GLY MET LEU VAL ALA TYR GLY ASN SEQRES 12 B 275 GLY PHE ILE THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 B 275 PRO PHE CYS ASP ILE MET GLU PRO LYS PHE ASP PHE ALA SEQRES 14 B 275 MET LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP ILE SEQRES 15 B 275 SER LEU PHE VAL ALA ALA ILE ILE CYS CYS GLY ASP ARG SEQRES 16 B 275 PRO GLY LEU LEU ASN VAL GLY HIS ILE GLU LYS MET GLN SEQRES 17 B 275 GLU GLY ILE VAL HIS VAL LEU ARG LEU HIS LEU GLN SER SEQRES 18 B 275 ASN HIS PRO ASP ASP ILE PHE LEU PHE PRO LYS LEU LEU SEQRES 19 B 275 GLN LYS MET ALA ASP LEU ARG GLN LEU VAL THR GLU HIS SEQRES 20 B 275 ALA GLN LEU VAL GLN ILE ILE LYS LYS THR GLU SER ASP SEQRES 21 B 275 ALA ALA LEU HIS PRO LEU LEU GLN GLU ILE TYR ARG ASP SEQRES 22 B 275 MET TYR SEQRES 1 C 13 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER HET P7F A 501 36 HET P7F B 501 36 HETNAM P7F (2~{R})-2-[3-[[1,3-BENZOXAZOL-2-YL-[3-(4- HETNAM 2 P7F METHOXYPHENOXY)PROPYL]AMINO]METHYL]PHENOXY]BUTANOIC HETNAM 3 P7F ACID FORMUL 4 P7F 2(C28 H30 N2 O6) HELIX 1 AA1 ASP A 203 PHE A 219 1 17 HELIX 2 AA2 ASN A 222 LEU A 230 1 9 HELIX 3 AA3 ASP A 244 MET A 250 1 7 HELIX 4 AA4 ALA A 268 LYS A 292 1 25 HELIX 5 AA5 ASP A 301 SER A 322 1 22 HELIX 6 AA6 ALA A 333 GLY A 335 5 3 HELIX 7 AA7 ARG A 341 LEU A 347 1 7 HELIX 8 AA8 PRO A 350 ILE A 354 5 5 HELIX 9 AA9 MET A 355 LEU A 368 1 14 HELIX 10 AB1 ASP A 371 CYS A 384 1 14 HELIX 11 AB2 ASN A 393 HIS A 416 1 24 HELIX 12 AB3 PHE A 421 GLN A 428 1 8 HELIX 13 AB4 GLN A 428 GLU A 451 1 24 HELIX 14 AB5 HIS A 457 ARG A 465 1 9 HELIX 15 AB6 SER B 205 PHE B 218 1 14 HELIX 16 AB7 ASN B 221 LEU B 229 1 9 HELIX 17 AB8 ASP B 243 MET B 249 1 7 HELIX 18 AB9 ALA B 268 LYS B 292 1 25 HELIX 19 AC1 ASP B 301 SER B 322 1 22 HELIX 20 AC2 ALA B 333 GLY B 335 5 3 HELIX 21 AC3 ARG B 341 LEU B 347 1 7 HELIX 22 AC4 PRO B 350 ILE B 354 5 5 HELIX 23 AC5 MET B 355 LEU B 368 1 14 HELIX 24 AC6 ASP B 371 CYS B 384 1 14 HELIX 25 AC7 ASN B 393 HIS B 416 1 24 HELIX 26 AC8 PHE B 421 GLU B 451 1 31 HELIX 27 AC9 HIS B 457 ARG B 465 1 9 HELIX 28 AD1 HIS C 687 LEU C 694 1 8 SHEET 1 AA1 4 PHE A 240 ILE A 242 0 SHEET 2 AA1 4 GLY A 337 THR A 340 1 O PHE A 338 N ILE A 242 SHEET 3 AA1 4 GLY A 329 VAL A 332 -1 N MET A 330 O ILE A 339 SHEET 4 AA1 4 MET A 325 ASN A 326 -1 N ASN A 326 O GLY A 329 SHEET 1 AA2 4 PHE B 239 ILE B 241 0 SHEET 2 AA2 4 GLY B 337 THR B 340 1 O PHE B 338 N ILE B 241 SHEET 3 AA2 4 GLY B 329 VAL B 332 -1 N MET B 330 O ILE B 339 SHEET 4 AA2 4 MET B 325 ASN B 326 -1 N ASN B 326 O GLY B 329 CISPEP 1 LYS A 349 PRO A 350 0 -12.94 CISPEP 2 LYS B 349 PRO B 350 0 -9.10 SITE 1 AC1 15 VAL A 256 PHE A 273 CYS A 275 CYS A 276 SITE 2 AC1 15 THR A 279 SER A 280 TYR A 314 ILE A 317 SITE 3 AC1 15 PHE A 318 LEU A 321 VAL A 324 VAL A 332 SITE 4 AC1 15 MET A 355 HIS A 440 TYR A 464 SITE 1 AC2 17 LEU B 247 PHE B 273 CYS B 275 CYS B 276 SITE 2 AC2 17 THR B 279 SER B 280 TYR B 314 PHE B 318 SITE 3 AC2 17 MET B 320 LEU B 321 VAL B 324 MET B 330 SITE 4 AC2 17 VAL B 332 MET B 355 HIS B 440 LEU B 460 SITE 5 AC2 17 TYR B 464 CRYST1 82.736 82.736 177.521 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012087 0.006978 0.000000 0.00000 SCALE2 0.000000 0.013956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005633 0.00000