data_6LBW # _entry.id 6LBW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6LBW pdb_00006lbw 10.2210/pdb6lbw/pdb WWPDB D_1300014409 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-11-18 2 'Structure model' 1 1 2020-12-16 3 'Structure model' 1 2 2020-12-23 4 'Structure model' 1 3 2021-03-03 5 'Structure model' 1 4 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation 3 2 'Structure model' citation_author 4 3 'Structure model' citation 5 3 'Structure model' citation_author 6 4 'Structure model' citation 7 4 'Structure model' citation_author 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 2 'Structure model' '_citation.country' 3 2 'Structure model' '_citation.journal_abbrev' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.pdbx_database_id_PubMed' 10 3 'Structure model' '_citation.title' 11 3 'Structure model' '_citation_author.identifier_ORCID' 12 4 'Structure model' '_citation.journal_volume' 13 4 'Structure model' '_citation.page_first' 14 4 'Structure model' '_citation.page_last' 15 4 'Structure model' '_citation.title' 16 4 'Structure model' '_citation.year' 17 4 'Structure model' '_citation_author.identifier_ORCID' 18 5 'Structure model' '_database_2.pdbx_DOI' 19 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6LBW _pdbx_database_status.recvd_initial_deposition_date 2019-11-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Aoyama, H.' 1 0000-0001-7915-8975 'Obika, S.' 2 0000-0002-6842-6812 'Nakagawa, O.' 3 0000-0001-5412-3530 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 3842 _citation.page_last 3848 _citation.title ;Crystallographic Structure of Novel Types of Ag I -Mediated Base Pairs in Non-canonical DNA Duplex Containing 2'-O,4'-C-Methylene Bridged Nucleic Acids. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.202004819 _citation.pdbx_database_id_PubMed 33274789 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakagawa, O.' 1 0000-0001-5412-3530 primary 'Aoyama, H.' 2 0000-0001-7915-8975 primary 'Fujii, A.' 3 0000-0001-6175-4031 primary 'Kishimoto, Y.' 4 0000-0001-8556-0178 primary 'Obika, S.' 5 0000-0002-6842-6812 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*(CBR)P*GP*AP*(LCC)P*TP*CP*GP*CP*G)-3') ; 3456.107 2 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 2 ? ? ? ? 3 water nat water 18.015 58 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(CBR)(DG)(DA)(LCC)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGANTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 CBR n 1 4 DG n 1 5 DA n 1 6 LCC n 1 7 DT n 1 8 DC n 1 9 DG n 1 10 DC n 1 11 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 CBR 3 3 3 CBR CBR A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 LCC 6 6 6 LCC LCC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DG 11 11 11 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 CBR 3 3 3 CBR CBR B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 LCC 6 6 6 LCC LCC B . n B 1 7 DT 7 7 7 DT DT B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DC 10 10 10 DC DC B . n B 1 11 DG 11 11 11 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG 1 101 1 AG AG A . D 2 AG 1 102 2 AG AG A . E 3 HOH 1 201 55 HOH HOH A . E 3 HOH 2 202 35 HOH HOH A . E 3 HOH 3 203 49 HOH HOH A . E 3 HOH 4 204 10 HOH HOH A . E 3 HOH 5 205 30 HOH HOH A . E 3 HOH 6 206 11 HOH HOH A . E 3 HOH 7 207 40 HOH HOH A . E 3 HOH 8 208 37 HOH HOH A . E 3 HOH 9 209 21 HOH HOH A . E 3 HOH 10 210 9 HOH HOH A . E 3 HOH 11 211 44 HOH HOH A . E 3 HOH 12 212 42 HOH HOH A . E 3 HOH 13 213 34 HOH HOH A . E 3 HOH 14 214 2 HOH HOH A . E 3 HOH 15 215 33 HOH HOH A . E 3 HOH 16 216 12 HOH HOH A . E 3 HOH 17 217 28 HOH HOH A . E 3 HOH 18 218 26 HOH HOH A . E 3 HOH 19 219 3 HOH HOH A . E 3 HOH 20 220 1 HOH HOH A . E 3 HOH 21 221 54 HOH HOH A . E 3 HOH 22 222 29 HOH HOH A . E 3 HOH 23 223 46 HOH HOH A . F 3 HOH 1 101 43 HOH HOH B . F 3 HOH 2 102 45 HOH HOH B . F 3 HOH 3 103 51 HOH HOH B . F 3 HOH 4 104 38 HOH HOH B . F 3 HOH 5 105 27 HOH HOH B . F 3 HOH 6 106 41 HOH HOH B . F 3 HOH 7 107 31 HOH HOH B . F 3 HOH 8 108 17 HOH HOH B . F 3 HOH 9 109 39 HOH HOH B . F 3 HOH 10 110 36 HOH HOH B . F 3 HOH 11 111 24 HOH HOH B . F 3 HOH 12 112 23 HOH HOH B . F 3 HOH 13 113 13 HOH HOH B . F 3 HOH 14 114 14 HOH HOH B . F 3 HOH 15 115 16 HOH HOH B . F 3 HOH 16 116 18 HOH HOH B . F 3 HOH 17 117 48 HOH HOH B . F 3 HOH 18 118 7 HOH HOH B . F 3 HOH 19 119 15 HOH HOH B . F 3 HOH 20 120 20 HOH HOH B . F 3 HOH 21 121 6 HOH HOH B . F 3 HOH 22 122 22 HOH HOH B . F 3 HOH 23 123 8 HOH HOH B . F 3 HOH 24 124 53 HOH HOH B . F 3 HOH 25 125 5 HOH HOH B . F 3 HOH 26 126 25 HOH HOH B . F 3 HOH 27 127 47 HOH HOH B . F 3 HOH 28 128 56 HOH HOH B . F 3 HOH 29 129 4 HOH HOH B . F 3 HOH 30 130 52 HOH HOH B . F 3 HOH 31 131 19 HOH HOH B . F 3 HOH 32 132 50 HOH HOH B . F 3 HOH 33 133 57 HOH HOH B . F 3 HOH 34 134 32 HOH HOH B . F 3 HOH 35 135 58 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6LBW _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.560 _cell.length_a_esd ? _cell.length_b 68.110 _cell.length_b_esd ? _cell.length_c 118.850 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6LBW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 2-Methyl-2,4-pentanediol _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-01-28 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9195 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9195 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate 29.464 _reflns.entry_id 6LBW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 34.055 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17630 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.314 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.160 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.561 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.099 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 58431 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.500 1.590 ? 1.210 ? 8941 2898 ? 2831 97.700 ? ? ? ? 0.946 ? ? ? ? ? ? ? ? 3.158 ? ? ? ? 1.144 ? ? 1 1 0.392 ? ? 1.590 1.700 ? 2.250 ? 9093 2722 ? 2675 98.300 ? ? ? ? 0.625 ? ? ? ? ? ? ? ? 3.399 ? ? ? ? 0.744 ? ? 2 1 0.758 ? ? 1.700 1.840 ? 4.200 ? 8177 2520 ? 2466 97.900 ? ? ? ? 0.311 ? ? ? ? ? ? ? ? 3.316 ? ? ? ? 0.372 ? ? 3 1 0.928 ? ? 1.840 2.010 ? 6.170 ? 7271 2341 ? 2269 96.900 ? ? ? ? 0.195 ? ? ? ? ? ? ? ? 3.204 ? ? ? ? 0.235 ? ? 4 1 0.966 ? ? 2.010 2.250 ? 8.900 ? 6744 2104 ? 2087 99.200 ? ? ? ? 0.166 ? ? ? ? ? ? ? ? 3.231 ? ? ? ? 0.200 ? ? 5 1 0.964 ? ? 2.250 2.600 ? 14.100 ? 6766 1869 ? 1861 99.600 ? ? ? ? 0.102 ? ? ? ? ? ? ? ? 3.636 ? ? ? ? 0.121 ? ? 6 1 0.982 ? ? 2.600 3.170 ? 17.420 ? 5445 1589 ? 1573 99.000 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 3.462 ? ? ? ? 0.086 ? ? 7 1 0.989 ? ? 3.170 4.470 ? 19.510 ? 3615 1203 ? 1177 97.800 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 3.071 ? ? ? ? 0.071 ? ? 8 1 0.990 ? ? 4.470 34.055 ? 21.500 ? 2379 698 ? 691 99.000 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 3.443 ? ? ? ? 0.061 ? ? 9 1 0.994 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 59.270 _refine.B_iso_mean 27.1068 _refine.B_iso_min 15.070 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6LBW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5010 _refine.ls_d_res_low 34.0550 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17616 _refine.ls_number_reflns_R_free 1740 _refine.ls_number_reflns_R_work 15876 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.1600 _refine.ls_percent_reflns_R_free 9.8800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2172 _refine.ls_R_factor_R_free 0.2426 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2143 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.400 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.1900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.5010 _refine_hist.d_res_low 34.0550 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 510 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 22 _refine_hist.pdbx_B_iso_mean_ligand 21.90 _refine_hist.pdbx_B_iso_mean_solvent 35.96 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 450 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.501 1.5448 . . 138 1311 97.0000 . . . 0.5086 0.0000 0.4271 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5448 1.5947 . . 142 1328 97.0000 . . . 0.3741 0.0000 0.4141 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5947 1.6517 . . 144 1302 98.0000 . . . 0.4226 0.0000 0.3548 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6517 1.7178 . . 149 1330 98.0000 . . . 0.3387 0.0000 0.3306 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7178 1.7960 . . 145 1323 98.0000 . . . 0.3000 0.0000 0.2892 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7960 1.8907 . . 141 1315 97.0000 . . . 0.3104 0.0000 0.3059 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8907 2.0091 . . 147 1280 97.0000 . . . 0.3260 0.0000 0.2797 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0091 2.1642 . . 146 1328 99.0000 . . . 0.2844 0.0000 0.2385 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1642 2.3819 . . 150 1364 100.0000 . . . 0.2067 0.0000 0.1910 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3819 2.7265 . . 145 1316 99.0000 . . . 0.2302 0.0000 0.1805 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7265 3.4346 . . 146 1352 98.0000 . . . 0.1965 0.0000 0.1831 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4346 10 . . 147 1327 98.0000 . . . 0.1968 0.0000 0.1652 . . . . . . . . . . . # _struct.entry_id 6LBW _struct.title 'Crystal structure of Ag-mediated base pairs in uncanonical DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6LBW _struct_keywords.text ;DNA, LNA, 2', 4'-BNA, metallo-base pair, silver ; _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6LBW _struct_ref.pdbx_db_accession 6LBW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6LBW A 1 ? 11 ? 6LBW 1 ? 11 ? 1 11 2 1 6LBW B 1 ? 11 ? 6LBW 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2960 ? 1 MORE -7 ? 1 'SSA (A^2)' 3370 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 2 "O3'" ? ? ? 1_555 A CBR 3 P ? ? A DG 2 A CBR 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale both ? A CBR 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A CBR 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? A DA 5 "O3'" ? ? ? 1_555 A LCC 6 P ? ? A DA 5 A LCC 6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? A LCC 6 "O3'" ? ? ? 1_555 A DT 7 P ? ? A LCC 6 A DT 7 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale5 covale both ? B DG 2 "O3'" ? ? ? 1_555 B CBR 3 P ? ? B DG 2 B CBR 3 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale6 covale both ? B CBR 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B CBR 3 B DG 4 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale7 covale both ? B DA 5 "O3'" ? ? ? 1_555 B LCC 6 P ? ? B DA 5 B LCC 6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale8 covale both ? B LCC 6 "O3'" ? ? ? 1_555 B DT 7 P ? ? B LCC 6 B DT 7 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? A DG 4 N7 ? ? ? 1_555 D AG . AG ? ? A DG 4 A AG 102 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc2 metalc ? ? A DA 5 N1 ? ? ? 1_555 C AG . AG ? ? A DA 5 A AG 101 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc3 metalc ? ? C AG . AG ? ? ? 1_555 B DA 5 N1 ? ? A AG 101 B DA 5 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc4 metalc ? ? D AG . AG ? ? ? 1_555 B DG 4 N7 ? ? A AG 102 B DG 4 1_555 ? ? ? ? ? ? ? 2.074 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CBR 3 N3 ? ? ? 1_555 B DG 9 N1 ? ? A CBR 3 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CBR 3 N4 ? ? ? 1_555 B DG 9 O6 ? ? A CBR 3 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CBR 3 O2 ? ? ? 1_555 B DG 9 N2 ? ? A CBR 3 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 4 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 4 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 4 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 8 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 8 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 8 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B CBR 3 N3 ? ? A DG 9 B CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B CBR 3 O2 ? ? A DG 9 B CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B CBR 3 N4 ? ? A DG 9 B CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 11 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 11 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 11 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 4 ? A DG 4 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 N7 ? B DG 4 ? B DG 4 ? 1_555 175.9 ? 2 N1 ? A DA 5 ? A DA 5 ? 1_555 AG ? C AG . ? A AG 101 ? 1_555 N1 ? B DA 5 ? B DA 5 ? 1_555 176.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AG 101 ? 6 'binding site for residue AG A 101' AC2 Software A AG 102 ? 5 'binding site for residue AG A 102' AC3 Software B DG 2 ? 12 'binding site for Di-nucleotide DG B 2 and CBR B 3' AC4 Software B CBR 3 ? 12 'binding site for Di-nucleotide CBR B 3 and DG B 4' AC5 Software B DA 5 ? 16 'binding site for Di-nucleotide DA B 5 and LCC B 6' AC6 Software B LCC 6 ? 16 'binding site for Di-nucleotide LCC B 6 and DT B 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 6 DA A 5 ? DA A 5 . ? 1_555 ? 3 AC1 6 AG D . ? AG A 102 . ? 1_555 ? 4 AC1 6 DG B 4 ? DG B 4 . ? 1_555 ? 5 AC1 6 DA B 5 ? DA B 5 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH B 121 . ? 1_555 ? 7 AC2 5 DG A 4 ? DG A 4 . ? 1_555 ? 8 AC2 5 AG C . ? AG A 101 . ? 1_555 ? 9 AC2 5 HOH E . ? HOH A 214 . ? 1_555 ? 10 AC2 5 DG B 4 ? DG B 4 . ? 1_555 ? 11 AC2 5 HOH F . ? HOH B 129 . ? 1_555 ? 12 AC3 12 LCC A 6 ? LCC A 6 . ? 1_555 ? 13 AC3 12 DC A 8 ? DC A 8 . ? 1_555 ? 14 AC3 12 DG A 9 ? DG A 9 . ? 1_555 ? 15 AC3 12 DC A 10 ? DC A 10 . ? 1_555 ? 16 AC3 12 DG A 11 ? DG A 11 . ? 4_565 ? 17 AC3 12 HOH E . ? HOH A 204 . ? 4_565 ? 18 AC3 12 DC B 1 ? DC B 1 . ? 1_555 ? 19 AC3 12 DG B 4 ? DG B 4 . ? 1_555 ? 20 AC3 12 HOH F . ? HOH B 104 . ? 1_555 ? 21 AC3 12 HOH F . ? HOH B 108 . ? 1_555 ? 22 AC3 12 HOH F . ? HOH B 109 . ? 1_555 ? 23 AC3 12 HOH F . ? HOH B 117 . ? 1_555 ? 24 AC4 12 DA A 5 ? DA A 5 . ? 1_555 ? 25 AC4 12 LCC A 6 ? LCC A 6 . ? 1_555 ? 26 AC4 12 DC A 8 ? DC A 8 . ? 1_555 ? 27 AC4 12 DG A 9 ? DG A 9 . ? 1_555 ? 28 AC4 12 AG C . ? AG A 101 . ? 1_555 ? 29 AC4 12 AG D . ? AG A 102 . ? 1_555 ? 30 AC4 12 HOH E . ? HOH A 204 . ? 4_565 ? 31 AC4 12 DG B 2 ? DG B 2 . ? 1_555 ? 32 AC4 12 DA B 5 ? DA B 5 . ? 1_555 ? 33 AC4 12 HOH F . ? HOH B 104 . ? 1_555 ? 34 AC4 12 HOH F . ? HOH B 117 . ? 1_555 ? 35 AC4 12 HOH F . ? HOH B 122 . ? 1_555 ? 36 AC5 16 DG A 2 ? DG A 2 . ? 1_555 ? 37 AC5 16 CBR A 3 ? CBR A 3 . ? 1_555 ? 38 AC5 16 DG A 4 ? DG A 4 . ? 1_555 ? 39 AC5 16 DC A 8 ? DC A 8 . ? 1_555 ? 40 AC5 16 AG C . ? AG A 101 . ? 1_555 ? 41 AC5 16 HOH E . ? HOH A 203 . ? 1_555 ? 42 AC5 16 HOH E . ? HOH A 206 . ? 14_555 ? 43 AC5 16 DG B 4 ? DG B 4 . ? 1_555 ? 44 AC5 16 DT B 7 ? DT B 7 . ? 1_555 ? 45 AC5 16 DC B 8 ? DC B 8 . ? 1_555 ? 46 AC5 16 HOH F . ? HOH B 110 . ? 1_555 ? 47 AC5 16 HOH F . ? HOH B 111 . ? 1_555 ? 48 AC5 16 HOH F . ? HOH B 119 . ? 1_555 ? 49 AC5 16 HOH F . ? HOH B 120 . ? 1_555 ? 50 AC5 16 HOH F . ? HOH B 121 . ? 1_555 ? 51 AC5 16 HOH F . ? HOH B 124 . ? 1_555 ? 52 AC6 16 DG A 2 ? DG A 2 . ? 1_555 ? 53 AC6 16 CBR A 3 ? CBR A 3 . ? 1_555 ? 54 AC6 16 DT A 7 ? DT A 7 . ? 14_555 ? 55 AC6 16 HOH E . ? HOH A 203 . ? 1_555 ? 56 AC6 16 HOH E . ? HOH A 206 . ? 14_555 ? 57 AC6 16 DA B 5 ? DA B 5 . ? 1_555 ? 58 AC6 16 DC B 8 ? DC B 8 . ? 1_555 ? 59 AC6 16 DG B 9 ? DG B 9 . ? 1_555 ? 60 AC6 16 HOH F . ? HOH B 107 . ? 1_555 ? 61 AC6 16 HOH F . ? HOH B 110 . ? 1_555 ? 62 AC6 16 HOH F . ? HOH B 111 . ? 1_555 ? 63 AC6 16 HOH F . ? HOH B 115 . ? 1_555 ? 64 AC6 16 HOH F . ? HOH B 119 . ? 1_555 ? 65 AC6 16 HOH F . ? HOH B 121 . ? 1_555 ? 66 AC6 16 HOH F . ? HOH B 125 . ? 14_555 ? 67 AC6 16 HOH F . ? HOH B 125 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 115 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 119 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.99 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 106 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 134 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_555 _pdbx_validate_symm_contact.dist 2.03 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.373 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.046 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.59 108.30 2.29 0.30 N 2 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 111.80 108.30 3.50 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 220 ? E HOH . 2 1 B HOH 125 ? F HOH . # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 10.3234 _pdbx_refine_tls.origin_y 25.4265 _pdbx_refine_tls.origin_z 14.5736 _pdbx_refine_tls.T[1][1] 0.1868 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0147 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0122 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.1900 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0198 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.1843 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.0243 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.0331 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.0425 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.0536 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.0589 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.0737 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0624 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0653 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0913 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0993 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0824 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.1680 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0389 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0942 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0001 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_entry_details.entry_id 6LBW _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 CBR BR BR N N 2 CBR P P N N 3 CBR OP1 O N N 4 CBR OP2 O N N 5 CBR "O5'" O N N 6 CBR N1 N N N 7 CBR C6 C N N 8 CBR C2 C N N 9 CBR O2 O N N 10 CBR N3 N N N 11 CBR C4 C N N 12 CBR N4 N N N 13 CBR C5 C N N 14 CBR "C2'" C N N 15 CBR "C5'" C N N 16 CBR "C4'" C N R 17 CBR "O4'" O N N 18 CBR "C1'" C N R 19 CBR "C3'" C N S 20 CBR "O3'" O N N 21 CBR OP3 O N N 22 CBR HOP2 H N N 23 CBR H6 H N N 24 CBR H41 H N N 25 CBR H42 H N N 26 CBR "H2'" H N N 27 CBR "H2''" H N N 28 CBR "H5'" H N N 29 CBR "H5''" H N N 30 CBR "H4'" H N N 31 CBR "H1'" H N N 32 CBR "H3'" H N N 33 CBR "HO3'" H N N 34 CBR HOP3 H N N 35 DA OP3 O N N 36 DA P P N N 37 DA OP1 O N N 38 DA OP2 O N N 39 DA "O5'" O N N 40 DA "C5'" C N N 41 DA "C4'" C N R 42 DA "O4'" O N N 43 DA "C3'" C N S 44 DA "O3'" O N N 45 DA "C2'" C N N 46 DA "C1'" C N R 47 DA N9 N Y N 48 DA C8 C Y N 49 DA N7 N Y N 50 DA C5 C Y N 51 DA C6 C Y N 52 DA N6 N N N 53 DA N1 N Y N 54 DA C2 C Y N 55 DA N3 N Y N 56 DA C4 C Y N 57 DA HOP3 H N N 58 DA HOP2 H N N 59 DA "H5'" H N N 60 DA "H5''" H N N 61 DA "H4'" H N N 62 DA "H3'" H N N 63 DA "HO3'" H N N 64 DA "H2'" H N N 65 DA "H2''" H N N 66 DA "H1'" H N N 67 DA H8 H N N 68 DA H61 H N N 69 DA H62 H N N 70 DA H2 H N N 71 DC OP3 O N N 72 DC P P N N 73 DC OP1 O N N 74 DC OP2 O N N 75 DC "O5'" O N N 76 DC "C5'" C N N 77 DC "C4'" C N R 78 DC "O4'" O N N 79 DC "C3'" C N S 80 DC "O3'" O N N 81 DC "C2'" C N N 82 DC "C1'" C N R 83 DC N1 N N N 84 DC C2 C N N 85 DC O2 O N N 86 DC N3 N N N 87 DC C4 C N N 88 DC N4 N N N 89 DC C5 C N N 90 DC C6 C N N 91 DC HOP3 H N N 92 DC HOP2 H N N 93 DC "H5'" H N N 94 DC "H5''" H N N 95 DC "H4'" H N N 96 DC "H3'" H N N 97 DC "HO3'" H N N 98 DC "H2'" H N N 99 DC "H2''" H N N 100 DC "H1'" H N N 101 DC H41 H N N 102 DC H42 H N N 103 DC H5 H N N 104 DC H6 H N N 105 DG OP3 O N N 106 DG P P N N 107 DG OP1 O N N 108 DG OP2 O N N 109 DG "O5'" O N N 110 DG "C5'" C N N 111 DG "C4'" C N R 112 DG "O4'" O N N 113 DG "C3'" C N S 114 DG "O3'" O N N 115 DG "C2'" C N N 116 DG "C1'" C N R 117 DG N9 N Y N 118 DG C8 C Y N 119 DG N7 N Y N 120 DG C5 C Y N 121 DG C6 C N N 122 DG O6 O N N 123 DG N1 N N N 124 DG C2 C N N 125 DG N2 N N N 126 DG N3 N N N 127 DG C4 C Y N 128 DG HOP3 H N N 129 DG HOP2 H N N 130 DG "H5'" H N N 131 DG "H5''" H N N 132 DG "H4'" H N N 133 DG "H3'" H N N 134 DG "HO3'" H N N 135 DG "H2'" H N N 136 DG "H2''" H N N 137 DG "H1'" H N N 138 DG H8 H N N 139 DG H1 H N N 140 DG H21 H N N 141 DG H22 H N N 142 DT OP3 O N N 143 DT P P N N 144 DT OP1 O N N 145 DT OP2 O N N 146 DT "O5'" O N N 147 DT "C5'" C N N 148 DT "C4'" C N R 149 DT "O4'" O N N 150 DT "C3'" C N S 151 DT "O3'" O N N 152 DT "C2'" C N N 153 DT "C1'" C N R 154 DT N1 N N N 155 DT C2 C N N 156 DT O2 O N N 157 DT N3 N N N 158 DT C4 C N N 159 DT O4 O N N 160 DT C5 C N N 161 DT C7 C N N 162 DT C6 C N N 163 DT HOP3 H N N 164 DT HOP2 H N N 165 DT "H5'" H N N 166 DT "H5''" H N N 167 DT "H4'" H N N 168 DT "H3'" H N N 169 DT "HO3'" H N N 170 DT "H2'" H N N 171 DT "H2''" H N N 172 DT "H1'" H N N 173 DT H3 H N N 174 DT H71 H N N 175 DT H72 H N N 176 DT H73 H N N 177 DT H6 H N N 178 HOH O O N N 179 HOH H1 H N N 180 HOH H2 H N N 181 LCC "O5'" O N N 182 LCC "C5'" C N N 183 LCC "C4'" C N R 184 LCC "O4'" O N N 185 LCC "C1'" C N R 186 LCC N1 N N N 187 LCC C6 C N N 188 LCC C5 C N N 189 LCC C5M C N N 190 LCC C4 C N N 191 LCC N4 N N N 192 LCC N3 N N N 193 LCC C2 C N N 194 LCC O2 O N N 195 LCC "C3'" C N S 196 LCC "C2'" C N R 197 LCC "O2'" O N N 198 LCC "O3'" O N N 199 LCC "C6'" C N N 200 LCC P P N N 201 LCC O1P O N N 202 LCC O2P O N N 203 LCC OXT O N N 204 LCC "H5'1" H N N 205 LCC "H5'2" H N N 206 LCC "H1'" H N N 207 LCC H6 H N N 208 LCC H5M1 H N N 209 LCC H5M2 H N N 210 LCC H5M3 H N N 211 LCC H41 H N N 212 LCC H42 H N N 213 LCC "H3'" H N N 214 LCC "H2'1" H N N 215 LCC H3T H N N 216 LCC "H6'1" H N N 217 LCC "H6'2" H N N 218 LCC H1P H N N 219 LCC HXT H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DA OP3 P sing N N 36 DA OP3 HOP3 sing N N 37 DA P OP1 doub N N 38 DA P OP2 sing N N 39 DA P "O5'" sing N N 40 DA OP2 HOP2 sing N N 41 DA "O5'" "C5'" sing N N 42 DA "C5'" "C4'" sing N N 43 DA "C5'" "H5'" sing N N 44 DA "C5'" "H5''" sing N N 45 DA "C4'" "O4'" sing N N 46 DA "C4'" "C3'" sing N N 47 DA "C4'" "H4'" sing N N 48 DA "O4'" "C1'" sing N N 49 DA "C3'" "O3'" sing N N 50 DA "C3'" "C2'" sing N N 51 DA "C3'" "H3'" sing N N 52 DA "O3'" "HO3'" sing N N 53 DA "C2'" "C1'" sing N N 54 DA "C2'" "H2'" sing N N 55 DA "C2'" "H2''" sing N N 56 DA "C1'" N9 sing N N 57 DA "C1'" "H1'" sing N N 58 DA N9 C8 sing Y N 59 DA N9 C4 sing Y N 60 DA C8 N7 doub Y N 61 DA C8 H8 sing N N 62 DA N7 C5 sing Y N 63 DA C5 C6 sing Y N 64 DA C5 C4 doub Y N 65 DA C6 N6 sing N N 66 DA C6 N1 doub Y N 67 DA N6 H61 sing N N 68 DA N6 H62 sing N N 69 DA N1 C2 sing Y N 70 DA C2 N3 doub Y N 71 DA C2 H2 sing N N 72 DA N3 C4 sing Y N 73 DC OP3 P sing N N 74 DC OP3 HOP3 sing N N 75 DC P OP1 doub N N 76 DC P OP2 sing N N 77 DC P "O5'" sing N N 78 DC OP2 HOP2 sing N N 79 DC "O5'" "C5'" sing N N 80 DC "C5'" "C4'" sing N N 81 DC "C5'" "H5'" sing N N 82 DC "C5'" "H5''" sing N N 83 DC "C4'" "O4'" sing N N 84 DC "C4'" "C3'" sing N N 85 DC "C4'" "H4'" sing N N 86 DC "O4'" "C1'" sing N N 87 DC "C3'" "O3'" sing N N 88 DC "C3'" "C2'" sing N N 89 DC "C3'" "H3'" sing N N 90 DC "O3'" "HO3'" sing N N 91 DC "C2'" "C1'" sing N N 92 DC "C2'" "H2'" sing N N 93 DC "C2'" "H2''" sing N N 94 DC "C1'" N1 sing N N 95 DC "C1'" "H1'" sing N N 96 DC N1 C2 sing N N 97 DC N1 C6 sing N N 98 DC C2 O2 doub N N 99 DC C2 N3 sing N N 100 DC N3 C4 doub N N 101 DC C4 N4 sing N N 102 DC C4 C5 sing N N 103 DC N4 H41 sing N N 104 DC N4 H42 sing N N 105 DC C5 C6 doub N N 106 DC C5 H5 sing N N 107 DC C6 H6 sing N N 108 DG OP3 P sing N N 109 DG OP3 HOP3 sing N N 110 DG P OP1 doub N N 111 DG P OP2 sing N N 112 DG P "O5'" sing N N 113 DG OP2 HOP2 sing N N 114 DG "O5'" "C5'" sing N N 115 DG "C5'" "C4'" sing N N 116 DG "C5'" "H5'" sing N N 117 DG "C5'" "H5''" sing N N 118 DG "C4'" "O4'" sing N N 119 DG "C4'" "C3'" sing N N 120 DG "C4'" "H4'" sing N N 121 DG "O4'" "C1'" sing N N 122 DG "C3'" "O3'" sing N N 123 DG "C3'" "C2'" sing N N 124 DG "C3'" "H3'" sing N N 125 DG "O3'" "HO3'" sing N N 126 DG "C2'" "C1'" sing N N 127 DG "C2'" "H2'" sing N N 128 DG "C2'" "H2''" sing N N 129 DG "C1'" N9 sing N N 130 DG "C1'" "H1'" sing N N 131 DG N9 C8 sing Y N 132 DG N9 C4 sing Y N 133 DG C8 N7 doub Y N 134 DG C8 H8 sing N N 135 DG N7 C5 sing Y N 136 DG C5 C6 sing N N 137 DG C5 C4 doub Y N 138 DG C6 O6 doub N N 139 DG C6 N1 sing N N 140 DG N1 C2 sing N N 141 DG N1 H1 sing N N 142 DG C2 N2 sing N N 143 DG C2 N3 doub N N 144 DG N2 H21 sing N N 145 DG N2 H22 sing N N 146 DG N3 C4 sing N N 147 DT OP3 P sing N N 148 DT OP3 HOP3 sing N N 149 DT P OP1 doub N N 150 DT P OP2 sing N N 151 DT P "O5'" sing N N 152 DT OP2 HOP2 sing N N 153 DT "O5'" "C5'" sing N N 154 DT "C5'" "C4'" sing N N 155 DT "C5'" "H5'" sing N N 156 DT "C5'" "H5''" sing N N 157 DT "C4'" "O4'" sing N N 158 DT "C4'" "C3'" sing N N 159 DT "C4'" "H4'" sing N N 160 DT "O4'" "C1'" sing N N 161 DT "C3'" "O3'" sing N N 162 DT "C3'" "C2'" sing N N 163 DT "C3'" "H3'" sing N N 164 DT "O3'" "HO3'" sing N N 165 DT "C2'" "C1'" sing N N 166 DT "C2'" "H2'" sing N N 167 DT "C2'" "H2''" sing N N 168 DT "C1'" N1 sing N N 169 DT "C1'" "H1'" sing N N 170 DT N1 C2 sing N N 171 DT N1 C6 sing N N 172 DT C2 O2 doub N N 173 DT C2 N3 sing N N 174 DT N3 C4 sing N N 175 DT N3 H3 sing N N 176 DT C4 O4 doub N N 177 DT C4 C5 sing N N 178 DT C5 C7 sing N N 179 DT C5 C6 doub N N 180 DT C7 H71 sing N N 181 DT C7 H72 sing N N 182 DT C7 H73 sing N N 183 DT C6 H6 sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 LCC "O5'" "C5'" sing N N 187 LCC "O5'" P sing N N 188 LCC "C5'" "C4'" sing N N 189 LCC "C5'" "H5'1" sing N N 190 LCC "C5'" "H5'2" sing N N 191 LCC "C4'" "O4'" sing N N 192 LCC "C4'" "C3'" sing N N 193 LCC "C4'" "C6'" sing N N 194 LCC "O4'" "C1'" sing N N 195 LCC "C1'" N1 sing N N 196 LCC "C1'" "C2'" sing N N 197 LCC "C1'" "H1'" sing N N 198 LCC N1 C6 sing N N 199 LCC N1 C2 sing N N 200 LCC C6 C5 doub N N 201 LCC C6 H6 sing N N 202 LCC C5 C5M sing N N 203 LCC C5 C4 sing N N 204 LCC C5M H5M1 sing N N 205 LCC C5M H5M2 sing N N 206 LCC C5M H5M3 sing N N 207 LCC C4 N4 sing N N 208 LCC C4 N3 doub N N 209 LCC N4 H41 sing N N 210 LCC N4 H42 sing N N 211 LCC N3 C2 sing N N 212 LCC C2 O2 doub N N 213 LCC "C3'" "C2'" sing N N 214 LCC "C3'" "O3'" sing N N 215 LCC "C3'" "H3'" sing N N 216 LCC "C2'" "O2'" sing N N 217 LCC "C2'" "H2'1" sing N N 218 LCC "O2'" "C6'" sing N N 219 LCC "O3'" H3T sing N N 220 LCC "C6'" "H6'1" sing N N 221 LCC "C6'" "H6'2" sing N N 222 LCC P O1P sing N N 223 LCC P O2P doub N N 224 LCC P OXT sing N N 225 LCC O1P H1P sing N N 226 LCC OXT HXT sing N N 227 # _ndb_struct_conf_na.entry_id 6LBW _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 -0.320 -0.067 0.416 0.315 -3.026 0.438 1 A_DC1:DG11_B A 1 ? B 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 0.223 -0.125 -0.186 -6.811 -4.355 1.279 2 A_DG2:DC10_B A 2 ? B 10 ? 19 1 1 A CBR 3 1_555 B DG 9 1_555 -0.146 -0.086 -0.044 9.871 -2.748 1.023 3 A_CBR3:DG9_B A 3 ? B 9 ? 19 1 1 A DG 4 1_555 B DC 8 1_555 0.128 -0.210 0.520 9.018 -10.475 -1.719 4 A_DG4:DC8_B A 4 ? B 8 ? 19 1 1 A DC 8 1_555 B DG 4 1_555 -0.020 -0.276 0.094 -7.643 -3.654 1.622 5 A_DC8:DG4_B A 8 ? B 4 ? 19 1 1 A DG 9 1_555 B CBR 3 1_555 0.233 -0.197 -0.080 -0.730 1.397 1.856 6 A_DG9:CBR3_B A 9 ? B 3 ? 19 1 1 A DC 10 1_555 B DG 2 1_555 -0.243 -0.148 -0.099 5.957 0.992 0.914 7 A_DC10:DG2_B A 10 ? B 2 ? 19 1 1 A DG 11 1_555 B DC 1 1_555 0.292 -0.130 0.452 9.181 -5.796 -0.846 8 A_DG11:DC1_B A 11 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.005 5.244 3.582 3.191 -7.656 -6.120 -4.309 10.400 6.019 49.511 20.635 -10.304 1 AA_DC1DG2:DC10DG11_BB A 1 ? B 11 ? A 2 ? B 10 ? 1 A DG 2 1_555 B DC 10 1_555 A CBR 3 1_555 B DG 9 1_555 -0.200 -1.681 3.118 -1.484 -4.608 -45.327 2.546 -0.379 2.935 5.959 -1.919 -45.571 2 AA_DG2CBR3:DG9DC10_BB A 2 ? B 10 ? A 3 ? B 9 ? 1 A CBR 3 1_555 B DG 9 1_555 A DG 4 1_555 B DC 8 1_555 -0.235 5.463 3.620 -0.746 -1.561 -8.391 -31.562 -3.969 4.519 10.524 -5.031 -8.567 3 AA_CBR3DG4:DC8DG9_BB A 3 ? B 9 ? A 4 ? B 8 ? 1 A DC 8 1_555 B DG 4 1_555 A DG 9 1_555 B CBR 3 1_555 0.049 5.375 3.297 1.630 -0.187 -10.527 -28.636 3.009 3.345 1.012 8.815 -10.653 4 AA_DC8DG9:CBR3DG4_BB A 8 ? B 4 ? A 9 ? B 3 ? 1 A DG 9 1_555 B CBR 3 1_555 A DC 10 1_555 B DG 2 1_555 -0.060 -1.568 3.293 -0.834 -5.101 -47.148 2.355 -0.141 3.115 6.355 -1.039 -47.414 5 AA_DG9DC10:DG2CBR3_BB A 9 ? B 3 ? A 10 ? B 2 ? 1 A DC 10 1_555 B DG 2 1_555 A DG 11 1_555 B DC 1 1_555 -0.298 5.234 3.425 -1.551 -1.853 -10.256 -24.810 -4.717 4.209 10.180 -8.521 -10.536 6 AA_DC10DG11:DC1DG2_BB A 10 ? B 2 ? A 11 ? B 1 ? # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 LCC ? ? LCC ? ? 'SUBJECT OF INVESTIGATION' ? 2 AG ? ? AG ? ? 'SUBJECT OF INVESTIGATION' ? # _atom_sites.entry_id 6LBW _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.035014 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014682 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008414 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AG BR C N O P # loop_