HEADER HYDROLASE 18-NOV-19 6LCG TITLE STRUCTURE OF D-CARBAMOYLASE MUTANT FROM NITRATIREDUCTOR INDICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CARBAMOYL-D-AMINO-ACID HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITRATIREDUCTOR INDICUS C115; SOURCE 3 ORGANISM_TAXID: 1231190; SOURCE 4 GENE: NA8A_19058; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CARBAMOYLASE, HYDANTOINSE PROCESS, D-AMINO ACID, BIOSYNTHETIC KEYWDS 2 PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.F.LIU,Y.NI,G.C.XU,W.DAI REVDAT 3 22-NOV-23 6LCG 1 REMARK REVDAT 2 12-MAY-21 6LCG 1 JRNL REVDAT 1 28-OCT-20 6LCG 0 JRNL AUTH Y.LIU,G.XU,J.ZHOU,J.NI,L.ZHANG,X.HOU,D.YIN,Y.RAO,Y.L.ZHAO, JRNL AUTH 2 Y.NI JRNL TITL STRUCTURE-GUIDED ENGINEERING OF D-CARBAMOYLASE REVEALS A KEY JRNL TITL 2 LOOP AT SUBSTRATE ENTRANCE TUNNEL JRNL REF ACS CATALYSIS V. 10 12393 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.0C02942 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8200 - 5.1600 1.00 2990 156 0.1911 0.2123 REMARK 3 2 5.1600 - 4.1000 1.00 2798 136 0.1729 0.2310 REMARK 3 3 4.1000 - 3.5800 1.00 2761 128 0.2091 0.2796 REMARK 3 4 3.5800 - 3.2500 1.00 2708 144 0.2581 0.3228 REMARK 3 5 3.2500 - 3.0200 1.00 2684 154 0.2862 0.3330 REMARK 3 6 3.0200 - 2.8400 0.99 2684 126 0.2988 0.3591 REMARK 3 7 2.8400 - 2.7000 0.99 2647 159 0.3463 0.4063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.497 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.073 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4920 REMARK 3 ANGLE : 0.426 6634 REMARK 3 CHIRALITY : 0.043 698 REMARK 3 PLANARITY : 0.004 876 REMARK 3 DIHEDRAL : 21.100 1824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0255 -19.6065 -3.4628 REMARK 3 T TENSOR REMARK 3 T11: 0.5694 T22: 0.6631 REMARK 3 T33: 0.6933 T12: -0.1895 REMARK 3 T13: -0.0578 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 6.3108 L22: 4.8885 REMARK 3 L33: 8.0945 L12: -5.2984 REMARK 3 L13: 4.1941 L23: -4.9263 REMARK 3 S TENSOR REMARK 3 S11: -0.5519 S12: 0.3550 S13: -0.6453 REMARK 3 S21: 0.6229 S22: 0.4256 S23: 0.5347 REMARK 3 S31: -0.8319 S32: -0.1876 S33: -0.4902 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5719 -11.7020 -10.9631 REMARK 3 T TENSOR REMARK 3 T11: 0.5529 T22: 0.4802 REMARK 3 T33: 0.5358 T12: -0.0162 REMARK 3 T13: -0.0501 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.1783 L22: 2.7481 REMARK 3 L33: 4.0170 L12: -0.7017 REMARK 3 L13: -0.3421 L23: 1.1195 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.4006 S13: -0.0103 REMARK 3 S21: -0.3802 S22: -0.1367 S23: 0.2606 REMARK 3 S31: -0.0936 S32: -0.5723 S33: 0.1237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9371 -27.4172 -10.1416 REMARK 3 T TENSOR REMARK 3 T11: 0.6405 T22: 0.3328 REMARK 3 T33: 0.5796 T12: -0.1094 REMARK 3 T13: 0.0113 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 6.9152 L22: 4.0996 REMARK 3 L33: 3.2665 L12: -2.5350 REMARK 3 L13: -0.2621 L23: -0.4921 REMARK 3 S TENSOR REMARK 3 S11: -0.1872 S12: 0.2474 S13: -0.6660 REMARK 3 S21: -0.2513 S22: 0.0508 S23: 0.4179 REMARK 3 S31: 0.8721 S32: -0.4169 S33: 0.0935 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6757 -25.1263 3.9512 REMARK 3 T TENSOR REMARK 3 T11: 0.9483 T22: 0.6202 REMARK 3 T33: 0.5956 T12: 0.0916 REMARK 3 T13: 0.0297 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 4.0775 L22: 6.3325 REMARK 3 L33: 7.5583 L12: 3.7224 REMARK 3 L13: -1.8914 L23: 0.7205 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -1.1935 S13: -0.3464 REMARK 3 S21: 1.1527 S22: 0.1644 S23: -0.2497 REMARK 3 S31: 0.4008 S32: 0.4705 S33: -0.2370 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9895 -18.2428 -12.9741 REMARK 3 T TENSOR REMARK 3 T11: 0.5870 T22: 0.5443 REMARK 3 T33: 1.0609 T12: -0.1008 REMARK 3 T13: -0.0675 T23: -0.1107 REMARK 3 L TENSOR REMARK 3 L11: 6.2001 L22: 4.6848 REMARK 3 L33: 3.3776 L12: 0.0782 REMARK 3 L13: -0.9180 L23: 3.8537 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: 0.0522 S13: 0.2337 REMARK 3 S21: -0.0316 S22: 0.5885 S23: -1.1632 REMARK 3 S31: 0.1317 S32: 1.0988 S33: -0.3723 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1791 -45.2433 -19.6629 REMARK 3 T TENSOR REMARK 3 T11: 0.9340 T22: 0.6078 REMARK 3 T33: 0.5521 T12: 0.2338 REMARK 3 T13: 0.1251 T23: -0.1280 REMARK 3 L TENSOR REMARK 3 L11: 4.4454 L22: 6.5399 REMARK 3 L33: 2.3016 L12: 1.3412 REMARK 3 L13: -3.0195 L23: 0.2328 REMARK 3 S TENSOR REMARK 3 S11: -0.8793 S12: 0.0298 S13: -0.4703 REMARK 3 S21: -0.1716 S22: 0.7484 S23: -0.7103 REMARK 3 S31: 1.2204 S32: 0.3090 S33: -0.0402 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1613 -47.2992 -21.3087 REMARK 3 T TENSOR REMARK 3 T11: 1.1465 T22: 0.5145 REMARK 3 T33: 0.8800 T12: 0.1431 REMARK 3 T13: 0.2137 T23: 0.0905 REMARK 3 L TENSOR REMARK 3 L11: 6.2765 L22: 5.0798 REMARK 3 L33: 6.1729 L12: -1.4662 REMARK 3 L13: 2.4608 L23: 0.9787 REMARK 3 S TENSOR REMARK 3 S11: 0.3323 S12: -0.1115 S13: -0.8426 REMARK 3 S21: -1.0399 S22: -0.0744 S23: -0.2895 REMARK 3 S31: 1.5257 S32: 0.2871 S33: -0.3187 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3037 -35.2758 -17.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.7025 T22: 0.6272 REMARK 3 T33: 1.0245 T12: 0.1310 REMARK 3 T13: 0.1961 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 3.4899 L22: 1.7462 REMARK 3 L33: 4.9221 L12: 0.3685 REMARK 3 L13: -0.2591 L23: -0.4439 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.0151 S13: -0.0571 REMARK 3 S21: -0.2827 S22: -0.0446 S23: -0.9075 REMARK 3 S31: 0.2997 S32: 0.8171 S33: -0.0083 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1594 -30.2319 -10.3015 REMARK 3 T TENSOR REMARK 3 T11: 0.6451 T22: 0.5966 REMARK 3 T33: 0.8715 T12: 0.1222 REMARK 3 T13: 0.1014 T23: -0.1370 REMARK 3 L TENSOR REMARK 3 L11: 4.2404 L22: 6.1028 REMARK 3 L33: 3.9716 L12: -0.8215 REMARK 3 L13: 3.0820 L23: -3.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.2407 S12: -0.4186 S13: 0.5517 REMARK 3 S21: 0.4529 S22: -0.0939 S23: -0.8741 REMARK 3 S31: -0.2398 S32: -0.0005 S33: 0.3235 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9170 -26.6747 -18.2875 REMARK 3 T TENSOR REMARK 3 T11: 0.6958 T22: 0.4746 REMARK 3 T33: 0.7769 T12: 0.0755 REMARK 3 T13: 0.0468 T23: 0.0859 REMARK 3 L TENSOR REMARK 3 L11: 3.0800 L22: 4.6423 REMARK 3 L33: 3.0091 L12: -2.2773 REMARK 3 L13: -1.6414 L23: 3.2180 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.0175 S13: 0.0867 REMARK 3 S21: -0.1833 S22: 0.0926 S23: -0.9211 REMARK 3 S31: 0.5274 S32: -0.5396 S33: -0.1295 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 187 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9902 -34.9406 -12.5523 REMARK 3 T TENSOR REMARK 3 T11: 0.6910 T22: 0.4105 REMARK 3 T33: 0.5961 T12: -0.0714 REMARK 3 T13: -0.0224 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 6.5363 L22: 3.7260 REMARK 3 L33: 5.0845 L12: -1.3943 REMARK 3 L13: -0.4181 L23: 2.0883 REMARK 3 S TENSOR REMARK 3 S11: 0.2853 S12: -0.2778 S13: -0.0372 REMARK 3 S21: 0.0226 S22: 0.1429 S23: 0.3401 REMARK 3 S31: 0.6719 S32: 0.0411 S33: -0.4830 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 227 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4348 -42.4105 -14.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.9102 T22: 0.4102 REMARK 3 T33: 0.4919 T12: 0.0838 REMARK 3 T13: 0.0401 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 7.8046 L22: 5.0481 REMARK 3 L33: 5.5241 L12: -1.8060 REMARK 3 L13: 1.7125 L23: -0.8643 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: -0.0614 S13: -0.5711 REMARK 3 S21: 0.4127 S22: 0.0734 S23: -0.3647 REMARK 3 S31: 1.3069 S32: 0.1023 S33: -0.0366 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0031 -36.4843 -28.8057 REMARK 3 T TENSOR REMARK 3 T11: 1.0194 T22: 0.6780 REMARK 3 T33: 0.6385 T12: -0.0096 REMARK 3 T13: 0.0454 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 6.3892 L22: 2.0949 REMARK 3 L33: 4.4132 L12: -3.8277 REMARK 3 L13: 3.7356 L23: -6.3559 REMARK 3 S TENSOR REMARK 3 S11: -0.1263 S12: 0.2507 S13: -0.6144 REMARK 3 S21: -0.2771 S22: 0.6422 S23: 0.4341 REMARK 3 S31: 0.6483 S32: -0.8224 S33: -0.3885 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 283 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7499 -13.5009 -17.8952 REMARK 3 T TENSOR REMARK 3 T11: 0.6666 T22: 0.5533 REMARK 3 T33: 0.8143 T12: -0.0585 REMARK 3 T13: -0.0150 T23: 0.1292 REMARK 3 L TENSOR REMARK 3 L11: 7.3899 L22: 8.2094 REMARK 3 L33: 2.0846 L12: -5.1359 REMARK 3 L13: 1.2263 L23: -0.5505 REMARK 3 S TENSOR REMARK 3 S11: 0.6444 S12: 0.3256 S13: -0.3958 REMARK 3 S21: -0.5060 S22: 0.3165 S23: 0.0869 REMARK 3 S31: -0.1707 S32: -0.3330 S33: -0.9166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LCG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 18-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER AXIOM 200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20291 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 21.00 REMARK 200 R MERGE (I) : 0.22900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.25700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1FO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CHLORIUM, TRIS-HCL, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.20700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.41400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.81050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 218.01750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.60350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.20700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 174.41400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 218.01750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 130.81050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.60350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 GLU A 206 REMARK 465 MET B 1 REMARK 465 SER B 202 REMARK 465 LEU B 203 REMARK 465 SER B 204 REMARK 465 GLY B 205 REMARK 465 GLU B 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 51.03 -102.94 REMARK 500 PRO A 55 -9.94 -56.46 REMARK 500 MET A 64 26.48 -147.02 REMARK 500 ASN A 74 -165.35 -121.28 REMARK 500 ASP A 102 51.82 39.74 REMARK 500 HIS A 143 89.35 -155.65 REMARK 500 LEU A 144 47.75 -106.59 REMARK 500 CYS A 171 -119.90 53.79 REMARK 500 ASN A 172 0.39 -69.47 REMARK 500 HIS A 284 -66.82 -138.29 REMARK 500 PHE A 286 50.80 -106.00 REMARK 500 ALA A 290 -63.84 -91.17 REMARK 500 ASN B 74 -163.75 -119.28 REMARK 500 ASP B 102 53.69 39.80 REMARK 500 LEU B 144 58.09 -116.19 REMARK 500 CYS B 171 -122.51 55.31 REMARK 500 ASN B 172 1.82 -62.30 REMARK 500 HIS B 284 -63.23 -137.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 401 DBREF 6LCG A 1 307 UNP K2NMS4 K2NMS4_9RHIZ 1 307 DBREF 6LCG B 1 307 UNP K2NMS4 K2NMS4_9RHIZ 1 307 SEQADV 6LCG ASN A 187 UNP K2NMS4 ASP 187 ENGINEERED MUTATION SEQADV 6LCG ASN A 200 UNP K2NMS4 ALA 200 ENGINEERED MUTATION SEQADV 6LCG GLY A 211 UNP K2NMS4 ARG 211 ENGINEERED MUTATION SEQADV 6LCG ASN B 187 UNP K2NMS4 ASP 187 ENGINEERED MUTATION SEQADV 6LCG ASN B 200 UNP K2NMS4 ALA 200 ENGINEERED MUTATION SEQADV 6LCG GLY B 211 UNP K2NMS4 ARG 211 ENGINEERED MUTATION SEQRES 1 A 307 MET THR ARG ARG ILE ARG ILE GLY GLY ALA GLN MET GLY SEQRES 2 A 307 ALA ILE SER ARG SER ASP SER LYS LYS GLU ILE VAL ASP SEQRES 3 A 307 ARG LEU ILE ALA LEU LEU ARG GLN ALA SER GLU LYS GLY SEQRES 4 A 307 CYS GLU LEU VAL VAL PHE PRO GLU LEU ALA LEU SER THR SEQRES 5 A 307 PHE PHE PRO ARG TRP TYR ALA GLU ARG ASP GLY MET ASP SEQRES 6 A 307 GLY TYR PHE GLU ASP GLY MET PRO ASN ALA ALA THR LEU SEQRES 7 A 307 PRO LEU PHE GLU GLU ALA ARG ARG LEU GLY ILE GLY PHE SEQRES 8 A 307 SER LEU GLY TYR ALA GLU LEU VAL GLN GLU ASP GLY ARG SEQRES 9 A 307 VAL ARG ARG PHE ASN THR THR VAL LEU VAL GLU ARG ASN SEQRES 10 A 307 GLY GLU ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU PRO SEQRES 11 A 307 GLY HIS ALA GLU TYR GLU PRO GLU ARG SER HIS GLN HIS SEQRES 12 A 307 LEU GLU LYS ARG TYR PHE GLU VAL GLY ASN THR GLY PHE SEQRES 13 A 307 GLN VAL TRP ASP ALA PHE GLY GLY ARG VAL GLY MET ALA SEQRES 14 A 307 ILE CYS ASN ASP ARG ARG TRP VAL GLU THR TYR ARG VAL SEQRES 15 A 307 MET GLY LEU GLN ASN VAL GLU LEU ILE LEU ILE GLY TYR SEQRES 16 A 307 ASN THR PRO VAL ASN ASP SER LEU SER GLY GLU SER GLU SEQRES 17 A 307 THR LEU GLY MET PHE HIS ASN HIS LEU THR MET GLN ALA SEQRES 18 A 307 GLY ALA TYR GLN ASN SER THR TRP VAL VAL GLY VAL ALA SEQRES 19 A 307 LYS ALA GLY VAL GLU ASP GLY HIS ARG LEU MET GLY GLY SEQRES 20 A 307 SER VAL ILE VAL ALA PRO THR GLY GLU ILE VAL ALA GLN SEQRES 21 A 307 ALA MET THR GLU GLY ASP GLU LEU ILE VAL ALA ASP CYS SEQRES 22 A 307 ASP LEU ASP ARG CYS ARG TYR TYR LYS SER HIS ILE PHE SEQRES 23 A 307 ASN PHE ALA ALA HIS ARG ARG PRO GLU PHE TYR GLN ARG SEQRES 24 A 307 ILE THR SER GLN THR GLY VAL GLU SEQRES 1 B 307 MET THR ARG ARG ILE ARG ILE GLY GLY ALA GLN MET GLY SEQRES 2 B 307 ALA ILE SER ARG SER ASP SER LYS LYS GLU ILE VAL ASP SEQRES 3 B 307 ARG LEU ILE ALA LEU LEU ARG GLN ALA SER GLU LYS GLY SEQRES 4 B 307 CYS GLU LEU VAL VAL PHE PRO GLU LEU ALA LEU SER THR SEQRES 5 B 307 PHE PHE PRO ARG TRP TYR ALA GLU ARG ASP GLY MET ASP SEQRES 6 B 307 GLY TYR PHE GLU ASP GLY MET PRO ASN ALA ALA THR LEU SEQRES 7 B 307 PRO LEU PHE GLU GLU ALA ARG ARG LEU GLY ILE GLY PHE SEQRES 8 B 307 SER LEU GLY TYR ALA GLU LEU VAL GLN GLU ASP GLY ARG SEQRES 9 B 307 VAL ARG ARG PHE ASN THR THR VAL LEU VAL GLU ARG ASN SEQRES 10 B 307 GLY GLU ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU PRO SEQRES 11 B 307 GLY HIS ALA GLU TYR GLU PRO GLU ARG SER HIS GLN HIS SEQRES 12 B 307 LEU GLU LYS ARG TYR PHE GLU VAL GLY ASN THR GLY PHE SEQRES 13 B 307 GLN VAL TRP ASP ALA PHE GLY GLY ARG VAL GLY MET ALA SEQRES 14 B 307 ILE CYS ASN ASP ARG ARG TRP VAL GLU THR TYR ARG VAL SEQRES 15 B 307 MET GLY LEU GLN ASN VAL GLU LEU ILE LEU ILE GLY TYR SEQRES 16 B 307 ASN THR PRO VAL ASN ASP SER LEU SER GLY GLU SER GLU SEQRES 17 B 307 THR LEU GLY MET PHE HIS ASN HIS LEU THR MET GLN ALA SEQRES 18 B 307 GLY ALA TYR GLN ASN SER THR TRP VAL VAL GLY VAL ALA SEQRES 19 B 307 LYS ALA GLY VAL GLU ASP GLY HIS ARG LEU MET GLY GLY SEQRES 20 B 307 SER VAL ILE VAL ALA PRO THR GLY GLU ILE VAL ALA GLN SEQRES 21 B 307 ALA MET THR GLU GLY ASP GLU LEU ILE VAL ALA ASP CYS SEQRES 22 B 307 ASP LEU ASP ARG CYS ARG TYR TYR LYS SER HIS ILE PHE SEQRES 23 B 307 ASN PHE ALA ALA HIS ARG ARG PRO GLU PHE TYR GLN ARG SEQRES 24 B 307 ILE THR SER GLN THR GLY VAL GLU HET PEG A 401 7 HET PEG B 401 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 HOH *32(H2 O) HELIX 1 AA1 SER A 20 LYS A 38 1 19 HELIX 2 AA2 PHE A 53 TRP A 57 5 5 HELIX 3 AA3 MET A 64 PHE A 68 5 5 HELIX 4 AA4 THR A 77 LEU A 87 1 11 HELIX 5 AA5 LEU A 144 PHE A 149 1 6 HELIX 6 AA6 ASN A 172 ARG A 175 5 4 HELIX 7 AA7 TRP A 176 LEU A 185 1 10 HELIX 8 AA8 GLU A 208 GLN A 225 1 18 HELIX 9 AA9 CYS A 278 HIS A 284 1 7 HELIX 10 AB1 ASN A 287 ARG A 292 1 6 HELIX 11 AB2 ARG A 293 PHE A 296 5 4 HELIX 12 AB3 TYR A 297 GLN A 303 1 7 HELIX 13 AB4 SER B 20 LYS B 38 1 19 HELIX 14 AB5 PHE B 53 TRP B 57 5 5 HELIX 15 AB6 MET B 64 PHE B 68 5 5 HELIX 16 AB7 THR B 77 GLY B 88 1 12 HELIX 17 AB8 LEU B 144 PHE B 149 1 6 HELIX 18 AB9 ASN B 172 ARG B 175 5 4 HELIX 19 AC1 TRP B 176 LEU B 185 1 10 HELIX 20 AC2 GLU B 208 GLN B 225 1 18 HELIX 21 AC3 CYS B 278 SER B 283 1 6 HELIX 22 AC4 ASN B 287 ARG B 292 1 6 HELIX 23 AC5 ARG B 293 PHE B 296 5 4 HELIX 24 AC6 TYR B 297 GLN B 303 1 7 SHEET 1 AA1 6 ILE A 120 ARG A 125 0 SHEET 2 AA1 6 VAL A 105 VAL A 114 -1 N LEU A 113 O GLY A 122 SHEET 3 AA1 6 GLY A 90 GLN A 100 -1 N TYR A 95 O THR A 110 SHEET 4 AA1 6 LEU A 42 VAL A 44 1 N VAL A 43 O GLY A 90 SHEET 5 AA1 6 ARG A 4 GLN A 11 1 N GLY A 8 O LEU A 42 SHEET 6 AA1 6 GLU A 267 ASP A 274 -1 O ILE A 269 N GLY A 9 SHEET 1 AA2 6 VAL A 158 ALA A 161 0 SHEET 2 AA2 6 GLY A 164 ILE A 170 -1 O VAL A 166 N TRP A 159 SHEET 3 AA2 6 LEU A 190 TYR A 195 1 O LEU A 190 N GLY A 167 SHEET 4 AA2 6 TRP A 229 ALA A 234 1 O TRP A 229 N ILE A 191 SHEET 5 AA2 6 VAL A 249 VAL A 251 -1 O VAL A 251 N VAL A 230 SHEET 6 AA2 6 ILE A 257 GLN A 260 -1 O VAL A 258 N ILE A 250 SHEET 1 AA3 2 GLY A 237 GLU A 239 0 SHEET 2 AA3 2 HIS A 242 LEU A 244 -1 O HIS A 242 N GLU A 239 SHEET 1 AA4 6 ILE B 120 ARG B 125 0 SHEET 2 AA4 6 VAL B 105 VAL B 114 -1 N LEU B 113 O VAL B 121 SHEET 3 AA4 6 GLY B 90 GLN B 100 -1 N GLU B 97 O PHE B 108 SHEET 4 AA4 6 LEU B 42 VAL B 44 1 N VAL B 43 O SER B 92 SHEET 5 AA4 6 ARG B 4 GLN B 11 1 N GLY B 8 O LEU B 42 SHEET 6 AA4 6 GLU B 267 ASP B 274 -1 O ILE B 269 N GLY B 9 SHEET 1 AA5 6 VAL B 158 ALA B 161 0 SHEET 2 AA5 6 GLY B 164 ILE B 170 -1 O VAL B 166 N TRP B 159 SHEET 3 AA5 6 LEU B 190 TYR B 195 1 O LEU B 190 N GLY B 167 SHEET 4 AA5 6 TRP B 229 ALA B 234 1 O TRP B 229 N ILE B 191 SHEET 5 AA5 6 VAL B 249 VAL B 251 -1 O VAL B 251 N VAL B 230 SHEET 6 AA5 6 ILE B 257 GLN B 260 -1 O VAL B 258 N ILE B 250 SHEET 1 AA6 2 GLY B 237 GLU B 239 0 SHEET 2 AA6 2 HIS B 242 LEU B 244 -1 O HIS B 242 N GLU B 239 CISPEP 1 MET A 72 PRO A 73 0 -0.39 CISPEP 2 MET B 72 PRO B 73 0 -0.87 SITE 1 AC1 5 MET A 1 ARG A 4 ARG A 6 ASP A 272 SITE 2 AC1 5 SER B 20 SITE 1 AC2 3 ARG B 17 GLY B 66 TYR B 67 CRYST1 95.650 95.650 261.621 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010455 0.006036 0.000000 0.00000 SCALE2 0.000000 0.012072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003822 0.00000