HEADER BIOSYNTHETIC PROTEIN 23-NOV-19 6LE3 TITLE CRYSTAL STRUCTURE OF GLUCONATE 5-DEHYDROGENASE FROM LENTIBACTER TITLE 2 ALGARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCONATE 5-DEHYDROGENASE; COMPND 3 CHAIN: E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LENTIBACTER ALGARUM; SOURCE 3 ORGANISM_TAXID: 576131; SOURCE 4 GENE: SAMN05444486_10810; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCONATE 5-DEHYDROGENASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.YUAN REVDAT 2 22-NOV-23 6LE3 1 REMARK REVDAT 1 13-MAY-20 6LE3 0 JRNL AUTH D.TIAN,X.FU,W.CAO,H.YUAN JRNL TITL CRYSTAL STRUCTURE OF GLUCONATE 5-DEHYDROGENASE FROM JRNL TITL 2 LENTIBACTER ALGARUM. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 76 228 2020 JRNL REFN ESSN 2053-230X JRNL PMID 32356525 JRNL DOI 10.1107/S2053230X20005336 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 47853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4000 - 5.4000 0.98 2790 144 0.2159 0.2578 REMARK 3 2 5.4000 - 4.2900 0.98 2758 146 0.1798 0.2001 REMARK 3 3 4.2900 - 3.7500 0.98 2803 150 0.1769 0.2089 REMARK 3 4 3.7500 - 3.4000 0.98 2798 152 0.1836 0.2155 REMARK 3 5 3.4000 - 3.1600 0.97 2746 137 0.1959 0.2642 REMARK 3 6 3.1600 - 2.9700 0.97 2758 162 0.2172 0.2995 REMARK 3 7 2.9700 - 2.8300 0.97 2760 154 0.2223 0.2455 REMARK 3 8 2.8300 - 2.7000 0.97 2740 161 0.2072 0.3036 REMARK 3 9 2.7000 - 2.6000 0.97 2771 144 0.2236 0.2764 REMARK 3 10 2.6000 - 2.5100 0.97 2737 136 0.2212 0.2721 REMARK 3 11 2.5100 - 2.4300 0.93 2650 126 0.2139 0.2881 REMARK 3 12 2.4300 - 2.3600 0.94 2689 153 0.2067 0.2748 REMARK 3 13 2.3600 - 2.3000 0.95 2695 137 0.2186 0.2871 REMARK 3 14 2.3000 - 2.2400 0.94 2680 137 0.2233 0.2952 REMARK 3 15 2.2400 - 2.1900 0.90 2550 155 0.2252 0.3337 REMARK 3 16 2.1900 - 2.1400 0.85 2353 140 0.2381 0.2762 REMARK 3 17 2.1400 - 2.1000 0.73 2145 96 0.2000 0.2773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.285 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.542 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7266 REMARK 3 ANGLE : 1.127 9863 REMARK 3 CHIRALITY : 0.062 1142 REMARK 3 PLANARITY : 0.007 1307 REMARK 3 DIHEDRAL : 8.301 4265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'E' AND RESID 7 THROUGH 253) REMARK 3 SELECTION : (CHAIN 'F' AND (RESID 7 THROUGH 190 OR REMARK 3 RESID 192 THROUGH 253)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN 'E' AND RESID 7 THROUGH 253) REMARK 3 SELECTION : (CHAIN 'G' AND (RESID 7 THROUGH 190 OR REMARK 3 RESID 192 THROUGH 253)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN 'E' AND RESID 7 THROUGH 253) REMARK 3 SELECTION : (CHAIN 'H' AND (RESID 7 THROUGH 190 OR REMARK 3 RESID 192 THROUGH 253)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49082 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : 0.37900 REMARK 200 FOR SHELL : 3.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3UF0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E -9 REMARK 465 GLY E -8 REMARK 465 SER E -7 REMARK 465 SER E -6 REMARK 465 HIS E -5 REMARK 465 HIS E -4 REMARK 465 HIS E -3 REMARK 465 HIS E -2 REMARK 465 HIS E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 465 GLY E 3 REMARK 465 ASN E 4 REMARK 465 THR E 5 REMARK 465 PHE E 190 REMARK 465 MET F -9 REMARK 465 GLY F -8 REMARK 465 SER F -7 REMARK 465 SER F -6 REMARK 465 HIS F -5 REMARK 465 HIS F -4 REMARK 465 HIS F -3 REMARK 465 HIS F -2 REMARK 465 HIS F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 THR F 2 REMARK 465 GLY F 3 REMARK 465 ASN F 4 REMARK 465 THR F 5 REMARK 465 HIS F 6 REMARK 465 MET G -9 REMARK 465 GLY G -8 REMARK 465 SER G -7 REMARK 465 SER G -6 REMARK 465 HIS G -5 REMARK 465 HIS G -4 REMARK 465 HIS G -3 REMARK 465 HIS G -2 REMARK 465 HIS G -1 REMARK 465 HIS G 0 REMARK 465 MET G 1 REMARK 465 THR G 2 REMARK 465 GLY G 3 REMARK 465 ASN G 4 REMARK 465 THR G 5 REMARK 465 MET H -9 REMARK 465 GLY H -8 REMARK 465 SER H -7 REMARK 465 SER H -6 REMARK 465 HIS H -5 REMARK 465 HIS H -4 REMARK 465 HIS H -3 REMARK 465 HIS H -2 REMARK 465 HIS H -1 REMARK 465 HIS H 0 REMARK 465 MET H 1 REMARK 465 THR H 2 REMARK 465 GLY H 3 REMARK 465 ASN H 4 REMARK 465 THR H 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU G 201 CD GLU G 201 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU E 195 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG E 208 CG - CD - NE ANGL. DEV. = -21.9 DEGREES REMARK 500 ARG E 208 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG E 208 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG F 75 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG F 170 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG G 75 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 LYS H 134 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG H 170 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA E 144 -158.68 -84.52 REMARK 500 ASP E 247 15.33 -144.39 REMARK 500 ALA F 144 -158.48 -85.48 REMARK 500 LEU F 195 -9.75 -58.53 REMARK 500 THR F 196 -152.59 -116.73 REMARK 500 ALA F 197 -22.24 80.88 REMARK 500 ASP F 247 15.22 -142.87 REMARK 500 ALA G 144 -158.44 -85.61 REMARK 500 ASP G 247 16.87 -142.49 REMARK 500 ALA H 144 -159.13 -85.02 REMARK 500 THR H 196 -154.76 -116.99 REMARK 500 ALA H 197 -26.48 81.26 REMARK 500 ASP H 247 15.25 -144.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE F 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE F 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE F 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE F 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE G 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE G 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE G 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACE H 301 DBREF1 6LE3 E 1 253 UNP A0A1H3NGY9_9RHOB DBREF2 6LE3 E A0A1H3NGY9 1 253 DBREF1 6LE3 F 1 253 UNP A0A1H3NGY9_9RHOB DBREF2 6LE3 F A0A1H3NGY9 1 253 DBREF1 6LE3 G 1 253 UNP A0A1H3NGY9_9RHOB DBREF2 6LE3 G A0A1H3NGY9 1 253 DBREF1 6LE3 H 1 253 UNP A0A1H3NGY9_9RHOB DBREF2 6LE3 H A0A1H3NGY9 1 253 SEQADV 6LE3 MET E -9 UNP A0A1H3NGY INITIATING METHIONINE SEQADV 6LE3 GLY E -8 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER E -7 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER E -6 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS E -5 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS E -4 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS E -3 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS E -2 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS E -1 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS E 0 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 MET F -9 UNP A0A1H3NGY INITIATING METHIONINE SEQADV 6LE3 GLY F -8 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER F -7 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER F -6 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS F -5 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS F -4 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS F -3 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS F -2 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS F -1 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS F 0 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 MET G -9 UNP A0A1H3NGY INITIATING METHIONINE SEQADV 6LE3 GLY G -8 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER G -7 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER G -6 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS G -5 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS G -4 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS G -3 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS G -2 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS G -1 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS G 0 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 MET H -9 UNP A0A1H3NGY INITIATING METHIONINE SEQADV 6LE3 GLY H -8 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER H -7 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 SER H -6 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS H -5 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS H -4 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS H -3 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS H -2 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS H -1 UNP A0A1H3NGY EXPRESSION TAG SEQADV 6LE3 HIS H 0 UNP A0A1H3NGY EXPRESSION TAG SEQRES 1 E 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET THR GLY SEQRES 2 E 263 ASN THR HIS LEU PHE ASP LEU SER GLY LYS VAL ALA CYS SEQRES 3 E 263 ILE THR GLY ALA SER SER GLY LEU GLY ARG ARG ALA ALA SEQRES 4 E 263 LEU THR LEU ALA ALA ALA GLY ALA LYS VAL VAL GLY VAL SEQRES 5 E 263 ALA ARG ARG ALA ASP ALA LEU ASP ASN LEU CYS ALA GLU SEQRES 6 E 263 ILE GLY PRO ALA ALA ALA ALA VAL VAL ALA ASP VAL ALA SEQRES 7 E 263 SER ARG ASP GLY LEU GLU ARG THR VAL ALA ASP ILE SER SEQRES 8 E 263 ALA PRO PHE GLY ALA PRO ASP ILE LEU VAL HIS ALA ALA SEQRES 9 E 263 GLY VAL ASN THR ARG GLU ALA ALA ASP ASP VAL THR PHE SEQRES 10 E 263 ASN GLY TRP ASP GLN THR LEU ALA LEU ASN LEU SER ALA SEQRES 11 E 263 PRO PHE PHE LEU SER LYS ALA PHE VAL PRO GLU MET ARG SEQRES 12 E 263 LYS LYS GLY TRP GLY ARG ILE VAL ASN PHE ALA SER LEU SEQRES 13 E 263 GLN THR THR ARG ALA PHE PRO GLY GLY ILE ALA TYR GLY SEQRES 14 E 263 ALA THR LYS GLY GLY ILE ALA GLN LEU THR ARG ALA MET SEQRES 15 E 263 ALA GLU ALA TRP SER PRO ASP GLY ILE THR ALA ASN ALA SEQRES 16 E 263 ILE GLY PRO GLY PHE PHE PRO THR GLU LEU THR ALA ALA SEQRES 17 E 263 VAL PHE GLU ASP ASP ALA ARG ALA ALA ARG ASN ALA ALA SEQRES 18 E 263 GLN THR CYS ILE GLY ARG ASN GLY THR LEU SER ASP MET SEQRES 19 E 263 ASP GLY PRO ILE LEU PHE LEU CYS SER ASP ALA SER ALA SEQRES 20 E 263 TYR VAL THR GLY GLN VAL LEU MET VAL ASP GLY GLY PHE SEQRES 21 E 263 THR ALA LYS SEQRES 1 F 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET THR GLY SEQRES 2 F 263 ASN THR HIS LEU PHE ASP LEU SER GLY LYS VAL ALA CYS SEQRES 3 F 263 ILE THR GLY ALA SER SER GLY LEU GLY ARG ARG ALA ALA SEQRES 4 F 263 LEU THR LEU ALA ALA ALA GLY ALA LYS VAL VAL GLY VAL SEQRES 5 F 263 ALA ARG ARG ALA ASP ALA LEU ASP ASN LEU CYS ALA GLU SEQRES 6 F 263 ILE GLY PRO ALA ALA ALA ALA VAL VAL ALA ASP VAL ALA SEQRES 7 F 263 SER ARG ASP GLY LEU GLU ARG THR VAL ALA ASP ILE SER SEQRES 8 F 263 ALA PRO PHE GLY ALA PRO ASP ILE LEU VAL HIS ALA ALA SEQRES 9 F 263 GLY VAL ASN THR ARG GLU ALA ALA ASP ASP VAL THR PHE SEQRES 10 F 263 ASN GLY TRP ASP GLN THR LEU ALA LEU ASN LEU SER ALA SEQRES 11 F 263 PRO PHE PHE LEU SER LYS ALA PHE VAL PRO GLU MET ARG SEQRES 12 F 263 LYS LYS GLY TRP GLY ARG ILE VAL ASN PHE ALA SER LEU SEQRES 13 F 263 GLN THR THR ARG ALA PHE PRO GLY GLY ILE ALA TYR GLY SEQRES 14 F 263 ALA THR LYS GLY GLY ILE ALA GLN LEU THR ARG ALA MET SEQRES 15 F 263 ALA GLU ALA TRP SER PRO ASP GLY ILE THR ALA ASN ALA SEQRES 16 F 263 ILE GLY PRO GLY PHE PHE PRO THR GLU LEU THR ALA ALA SEQRES 17 F 263 VAL PHE GLU ASP ASP ALA ARG ALA ALA ARG ASN ALA ALA SEQRES 18 F 263 GLN THR CYS ILE GLY ARG ASN GLY THR LEU SER ASP MET SEQRES 19 F 263 ASP GLY PRO ILE LEU PHE LEU CYS SER ASP ALA SER ALA SEQRES 20 F 263 TYR VAL THR GLY GLN VAL LEU MET VAL ASP GLY GLY PHE SEQRES 21 F 263 THR ALA LYS SEQRES 1 G 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET THR GLY SEQRES 2 G 263 ASN THR HIS LEU PHE ASP LEU SER GLY LYS VAL ALA CYS SEQRES 3 G 263 ILE THR GLY ALA SER SER GLY LEU GLY ARG ARG ALA ALA SEQRES 4 G 263 LEU THR LEU ALA ALA ALA GLY ALA LYS VAL VAL GLY VAL SEQRES 5 G 263 ALA ARG ARG ALA ASP ALA LEU ASP ASN LEU CYS ALA GLU SEQRES 6 G 263 ILE GLY PRO ALA ALA ALA ALA VAL VAL ALA ASP VAL ALA SEQRES 7 G 263 SER ARG ASP GLY LEU GLU ARG THR VAL ALA ASP ILE SER SEQRES 8 G 263 ALA PRO PHE GLY ALA PRO ASP ILE LEU VAL HIS ALA ALA SEQRES 9 G 263 GLY VAL ASN THR ARG GLU ALA ALA ASP ASP VAL THR PHE SEQRES 10 G 263 ASN GLY TRP ASP GLN THR LEU ALA LEU ASN LEU SER ALA SEQRES 11 G 263 PRO PHE PHE LEU SER LYS ALA PHE VAL PRO GLU MET ARG SEQRES 12 G 263 LYS LYS GLY TRP GLY ARG ILE VAL ASN PHE ALA SER LEU SEQRES 13 G 263 GLN THR THR ARG ALA PHE PRO GLY GLY ILE ALA TYR GLY SEQRES 14 G 263 ALA THR LYS GLY GLY ILE ALA GLN LEU THR ARG ALA MET SEQRES 15 G 263 ALA GLU ALA TRP SER PRO ASP GLY ILE THR ALA ASN ALA SEQRES 16 G 263 ILE GLY PRO GLY PHE PHE PRO THR GLU LEU THR ALA ALA SEQRES 17 G 263 VAL PHE GLU ASP ASP ALA ARG ALA ALA ARG ASN ALA ALA SEQRES 18 G 263 GLN THR CYS ILE GLY ARG ASN GLY THR LEU SER ASP MET SEQRES 19 G 263 ASP GLY PRO ILE LEU PHE LEU CYS SER ASP ALA SER ALA SEQRES 20 G 263 TYR VAL THR GLY GLN VAL LEU MET VAL ASP GLY GLY PHE SEQRES 21 G 263 THR ALA LYS SEQRES 1 H 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET THR GLY SEQRES 2 H 263 ASN THR HIS LEU PHE ASP LEU SER GLY LYS VAL ALA CYS SEQRES 3 H 263 ILE THR GLY ALA SER SER GLY LEU GLY ARG ARG ALA ALA SEQRES 4 H 263 LEU THR LEU ALA ALA ALA GLY ALA LYS VAL VAL GLY VAL SEQRES 5 H 263 ALA ARG ARG ALA ASP ALA LEU ASP ASN LEU CYS ALA GLU SEQRES 6 H 263 ILE GLY PRO ALA ALA ALA ALA VAL VAL ALA ASP VAL ALA SEQRES 7 H 263 SER ARG ASP GLY LEU GLU ARG THR VAL ALA ASP ILE SER SEQRES 8 H 263 ALA PRO PHE GLY ALA PRO ASP ILE LEU VAL HIS ALA ALA SEQRES 9 H 263 GLY VAL ASN THR ARG GLU ALA ALA ASP ASP VAL THR PHE SEQRES 10 H 263 ASN GLY TRP ASP GLN THR LEU ALA LEU ASN LEU SER ALA SEQRES 11 H 263 PRO PHE PHE LEU SER LYS ALA PHE VAL PRO GLU MET ARG SEQRES 12 H 263 LYS LYS GLY TRP GLY ARG ILE VAL ASN PHE ALA SER LEU SEQRES 13 H 263 GLN THR THR ARG ALA PHE PRO GLY GLY ILE ALA TYR GLY SEQRES 14 H 263 ALA THR LYS GLY GLY ILE ALA GLN LEU THR ARG ALA MET SEQRES 15 H 263 ALA GLU ALA TRP SER PRO ASP GLY ILE THR ALA ASN ALA SEQRES 16 H 263 ILE GLY PRO GLY PHE PHE PRO THR GLU LEU THR ALA ALA SEQRES 17 H 263 VAL PHE GLU ASP ASP ALA ARG ALA ALA ARG ASN ALA ALA SEQRES 18 H 263 GLN THR CYS ILE GLY ARG ASN GLY THR LEU SER ASP MET SEQRES 19 H 263 ASP GLY PRO ILE LEU PHE LEU CYS SER ASP ALA SER ALA SEQRES 20 H 263 TYR VAL THR GLY GLN VAL LEU MET VAL ASP GLY GLY PHE SEQRES 21 H 263 THR ALA LYS HET ACE E 501 3 HET ACE F 301 3 HET ACE F 302 3 HET ACE F 303 3 HET ACE F 304 3 HET ACE G 301 3 HET ACE G 302 3 HET ACE G 303 3 HET ACE H 301 3 HETNAM ACE ACETYL GROUP FORMUL 5 ACE 9(C2 H4 O) FORMUL 14 HOH *385(H2 O) HELIX 1 AA1 SER E 22 ALA E 35 1 14 HELIX 2 AA2 ARG E 45 GLY E 57 1 13 HELIX 3 AA3 GLY E 72 ALA E 82 1 11 HELIX 4 AA4 ALA E 101 VAL E 105 5 5 HELIX 5 AA5 THR E 106 LEU E 118 1 13 HELIX 6 AA6 LEU E 118 GLY E 136 1 19 HELIX 7 AA7 SER E 145 THR E 149 5 5 HELIX 8 AA8 GLY E 155 SER E 177 1 23 HELIX 9 AA9 THR E 193 LEU E 195 5 3 HELIX 10 AB1 THR E 196 GLU E 201 1 6 HELIX 11 AB2 ASP E 202 THR E 213 1 12 HELIX 12 AB3 THR E 220 ASP E 223 5 4 HELIX 13 AB4 MET E 224 SER E 233 1 10 HELIX 14 AB5 ASP E 234 ALA E 237 5 4 HELIX 15 AB6 GLY E 249 LYS E 253 5 5 HELIX 16 AB7 SER F 22 ALA F 35 1 14 HELIX 17 AB8 ARG F 45 GLY F 57 1 13 HELIX 18 AB9 GLY F 72 ALA F 82 1 11 HELIX 19 AC1 ALA F 101 VAL F 105 5 5 HELIX 20 AC2 THR F 106 LEU F 118 1 13 HELIX 21 AC3 LEU F 118 GLY F 136 1 19 HELIX 22 AC4 SER F 145 THR F 149 5 5 HELIX 23 AC5 GLY F 155 SER F 177 1 23 HELIX 24 AC6 ASP F 202 THR F 213 1 12 HELIX 25 AC7 THR F 220 ASP F 223 5 4 HELIX 26 AC8 MET F 224 SER F 233 1 10 HELIX 27 AC9 ASP F 234 ALA F 237 5 4 HELIX 28 AD1 GLY F 249 LYS F 253 5 5 HELIX 29 AD2 SER G 22 ALA G 35 1 14 HELIX 30 AD3 ARG G 45 GLY G 57 1 13 HELIX 31 AD4 GLY G 72 ALA G 82 1 11 HELIX 32 AD5 ALA G 101 VAL G 105 5 5 HELIX 33 AD6 THR G 106 LEU G 118 1 13 HELIX 34 AD7 LEU G 118 GLY G 136 1 19 HELIX 35 AD8 SER G 145 THR G 149 5 5 HELIX 36 AD9 GLY G 155 SER G 177 1 23 HELIX 37 AE1 THR G 196 GLU G 201 1 6 HELIX 38 AE2 ASP G 202 THR G 213 1 12 HELIX 39 AE3 THR G 220 ASP G 223 5 4 HELIX 40 AE4 MET G 224 SER G 233 1 10 HELIX 41 AE5 ASP G 234 ALA G 237 5 4 HELIX 42 AE6 GLY G 249 LYS G 253 5 5 HELIX 43 AE7 SER H 22 ALA H 35 1 14 HELIX 44 AE8 ARG H 45 GLY H 57 1 13 HELIX 45 AE9 GLY H 72 ALA H 82 1 11 HELIX 46 AF1 ALA H 101 VAL H 105 5 5 HELIX 47 AF2 THR H 106 LEU H 118 1 13 HELIX 48 AF3 LEU H 118 GLY H 136 1 19 HELIX 49 AF4 SER H 145 THR H 149 5 5 HELIX 50 AF5 GLY H 155 SER H 177 1 23 HELIX 51 AF6 ASP H 202 THR H 213 1 12 HELIX 52 AF7 THR H 220 ASP H 223 5 4 HELIX 53 AF8 MET H 224 SER H 233 1 10 HELIX 54 AF9 ASP H 234 ALA H 237 5 4 HELIX 55 AG1 GLY H 249 LYS H 253 5 5 SHEET 1 AA1 7 ALA E 60 VAL E 64 0 SHEET 2 AA1 7 LYS E 38 ALA E 43 1 N GLY E 41 O VAL E 63 SHEET 3 AA1 7 VAL E 14 THR E 18 1 N ALA E 15 O LYS E 38 SHEET 4 AA1 7 ILE E 89 HIS E 92 1 O VAL E 91 N CYS E 16 SHEET 5 AA1 7 GLY E 138 PHE E 143 1 O VAL E 141 N LEU E 90 SHEET 6 AA1 7 ILE E 181 PRO E 188 1 O ASN E 184 N ASN E 142 SHEET 7 AA1 7 VAL E 243 VAL E 246 1 O LEU E 244 N ALA E 185 SHEET 1 AA2 7 ALA F 60 VAL F 64 0 SHEET 2 AA2 7 LYS F 38 ALA F 43 1 N GLY F 41 O VAL F 63 SHEET 3 AA2 7 VAL F 14 THR F 18 1 N ALA F 15 O LYS F 38 SHEET 4 AA2 7 ILE F 89 HIS F 92 1 O VAL F 91 N CYS F 16 SHEET 5 AA2 7 GLY F 138 PHE F 143 1 O VAL F 141 N LEU F 90 SHEET 6 AA2 7 ILE F 181 PRO F 188 1 O ILE F 186 N ASN F 142 SHEET 7 AA2 7 VAL F 243 VAL F 246 1 O LEU F 244 N ALA F 185 SHEET 1 AA3 7 ALA G 60 VAL G 64 0 SHEET 2 AA3 7 LYS G 38 ALA G 43 1 N GLY G 41 O VAL G 63 SHEET 3 AA3 7 VAL G 14 THR G 18 1 N ALA G 15 O LYS G 38 SHEET 4 AA3 7 ILE G 89 HIS G 92 1 O VAL G 91 N CYS G 16 SHEET 5 AA3 7 GLY G 138 PHE G 143 1 O VAL G 141 N LEU G 90 SHEET 6 AA3 7 ILE G 181 PRO G 188 1 O ILE G 186 N ASN G 142 SHEET 7 AA3 7 VAL G 243 VAL G 246 1 O LEU G 244 N GLY G 187 SHEET 1 AA4 7 ALA H 60 VAL H 64 0 SHEET 2 AA4 7 LYS H 38 ALA H 43 1 N GLY H 41 O VAL H 63 SHEET 3 AA4 7 VAL H 14 THR H 18 1 N ALA H 15 O LYS H 38 SHEET 4 AA4 7 ILE H 89 HIS H 92 1 O VAL H 91 N CYS H 16 SHEET 5 AA4 7 GLY H 138 PHE H 143 1 O VAL H 141 N LEU H 90 SHEET 6 AA4 7 ILE H 181 PRO H 188 1 O ASN H 184 N ILE H 140 SHEET 7 AA4 7 VAL H 243 VAL H 246 1 O LEU H 244 N ALA H 185 SITE 1 AC1 5 GLY E 163 ARG E 170 HOH E 637 THR F 148 SITE 2 AC1 5 GLY F 163 SITE 1 AC2 5 SER F 145 LEU F 146 TYR F 158 PRO F 188 SITE 2 AC2 5 GLY F 189 SITE 1 AC3 5 GLY F 19 VAL F 42 ALA F 65 ASP F 66 SITE 2 AC3 5 VAL F 67 SITE 1 AC4 1 PRO F 192 SITE 1 AC5 2 VAL F 67 ARG F 70 SITE 1 AC6 5 SER G 145 LEU G 146 TYR G 158 PRO G 188 SITE 2 AC6 5 GLY G 189 SITE 1 AC7 2 ARG G 205 ASN G 209 SITE 1 AC8 3 ARG G 217 ASN G 218 HOH G 414 SITE 1 AC9 4 SER H 145 LEU H 146 PRO H 188 GLY H 189 CRYST1 55.424 55.484 79.158 100.51 105.66 97.99 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018043 0.002532 0.005799 0.00000 SCALE2 0.000000 0.018200 0.004314 0.00000 SCALE3 0.000000 0.000000 0.013484 0.00000