HEADER HYDROLASE 25-NOV-19 6LEI TITLE STRUCTURE OF D-CARBAMOYLASE FROM NITRATIREDUCTOR INDICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CARBAMOYL-D-AMINO-ACID HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITRATIREDUCTOR INDICUS C115; SOURCE 3 ORGANISM_TAXID: 1231190; SOURCE 4 GENE: NA8A_19058; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CARBAMOYLASE, HYDANTOINSE PROCESS, D-AMINO ACID, BIOSYNTHETIC KEYWDS 2 PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NI,Y.F.LIU,G.C.XU REVDAT 3 22-NOV-23 6LEI 1 REMARK REVDAT 2 12-MAY-21 6LEI 1 JRNL REVDAT 1 28-OCT-20 6LEI 0 JRNL AUTH Y.LIU,G.XU,J.ZHOU,J.NI,L.ZHANG,X.HOU,D.YIN,Y.RAO,Y.L.ZHAO, JRNL AUTH 2 Y.NI JRNL TITL STRUCTURE-GUIDED ENGINEERING OF D-CARBAMOYLASE REVEALS A KEY JRNL TITL 2 LOOP AT SUBSTRATE ENTRANCE TUNNEL JRNL REF ACS CATALYSIS V. 10 12393 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.0C02942 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1000 - 5.0900 1.00 2817 144 0.2097 0.2660 REMARK 3 2 5.0900 - 4.0400 1.00 2651 119 0.1602 0.1740 REMARK 3 3 4.0400 - 3.5300 1.00 2598 129 0.1834 0.2089 REMARK 3 4 3.5300 - 3.2100 1.00 2577 120 0.2156 0.2565 REMARK 3 5 3.2100 - 2.9800 1.00 2549 136 0.2427 0.2873 REMARK 3 6 2.9800 - 2.8000 1.00 2526 129 0.2619 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.324 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4986 REMARK 3 ANGLE : 0.437 6719 REMARK 3 CHIRALITY : 0.043 708 REMARK 3 PLANARITY : 0.004 887 REMARK 3 DIHEDRAL : 20.589 1850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5726 19.8858 -0.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.2072 REMARK 3 T33: 0.2162 T12: 0.0682 REMARK 3 T13: 0.0462 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 2.7182 L22: 3.1595 REMARK 3 L33: 2.5535 L12: 0.8261 REMARK 3 L13: 0.8629 L23: -0.2984 REMARK 3 S TENSOR REMARK 3 S11: -0.5951 S12: -0.5996 S13: 0.1971 REMARK 3 S21: 0.3829 S22: 0.5821 S23: 0.0166 REMARK 3 S31: 0.5151 S32: 0.6110 S33: -0.0446 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1985 16.9393 1.8074 REMARK 3 T TENSOR REMARK 3 T11: 0.3268 T22: 0.2562 REMARK 3 T33: 0.3478 T12: -0.0382 REMARK 3 T13: 0.0180 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 6.6592 L22: 5.8066 REMARK 3 L33: 8.9663 L12: -4.7266 REMARK 3 L13: -7.4059 L23: 6.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.3858 S12: -0.8546 S13: 0.5294 REMARK 3 S21: 0.2052 S22: 0.7454 S23: -0.4987 REMARK 3 S31: -0.0607 S32: 1.7031 S33: -0.0565 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7462 12.7376 -12.3487 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.2255 REMARK 3 T33: 0.2834 T12: 0.0001 REMARK 3 T13: 0.0723 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 2.6268 L22: 2.6853 REMARK 3 L33: 5.2104 L12: 0.2889 REMARK 3 L13: -0.4468 L23: -0.8192 REMARK 3 S TENSOR REMARK 3 S11: 0.1002 S12: 0.1370 S13: 0.0058 REMARK 3 S21: -0.2812 S22: 0.1569 S23: -0.7324 REMARK 3 S31: 0.2386 S32: 0.2615 S33: -0.2614 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9320 7.6335 -8.0561 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.1697 REMARK 3 T33: 0.2831 T12: -0.0517 REMARK 3 T13: 0.0551 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.3958 L22: 2.5996 REMARK 3 L33: 3.7753 L12: -0.8402 REMARK 3 L13: 0.4793 L23: -0.9284 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.1385 S13: -0.5788 REMARK 3 S21: -0.1965 S22: 0.2456 S23: -0.0068 REMARK 3 S31: 0.1113 S32: -0.0293 S33: -0.0918 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5588 17.2552 -14.2223 REMARK 3 T TENSOR REMARK 3 T11: 0.2797 T22: 0.1759 REMARK 3 T33: 0.1670 T12: 0.0069 REMARK 3 T13: -0.0456 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.6061 L22: 1.5499 REMARK 3 L33: 3.4925 L12: -0.1446 REMARK 3 L13: -1.2064 L23: 0.6953 REMARK 3 S TENSOR REMARK 3 S11: 0.1443 S12: 0.1314 S13: 0.1325 REMARK 3 S21: -0.1335 S22: -0.1013 S23: 0.1086 REMARK 3 S31: -0.1420 S32: 0.1233 S33: -0.0314 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1303 30.1376 -11.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: 0.1648 REMARK 3 T33: 0.2147 T12: 0.0255 REMARK 3 T13: 0.0029 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 6.1386 L22: 7.5453 REMARK 3 L33: 6.7027 L12: -3.1538 REMARK 3 L13: 0.1219 L23: 0.7249 REMARK 3 S TENSOR REMARK 3 S11: -0.2103 S12: -0.4609 S13: 0.0761 REMARK 3 S21: -0.5518 S22: 0.0650 S23: -0.5366 REMARK 3 S31: 0.1435 S32: 0.8336 S33: 0.1388 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5020 25.4353 -8.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.1964 REMARK 3 T33: 0.1541 T12: -0.0598 REMARK 3 T13: -0.0260 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 5.5261 L22: 3.1620 REMARK 3 L33: 3.4583 L12: -1.3004 REMARK 3 L13: -2.9330 L23: 0.9199 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: 0.1690 S13: -0.0439 REMARK 3 S21: -0.4153 S22: 0.2051 S23: -0.0774 REMARK 3 S31: -0.3639 S32: 0.1537 S33: -0.0611 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1008 26.4553 1.6883 REMARK 3 T TENSOR REMARK 3 T11: 0.3530 T22: 0.2516 REMARK 3 T33: 0.2820 T12: 0.0157 REMARK 3 T13: 0.0843 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 4.8792 L22: 2.8603 REMARK 3 L33: 3.2670 L12: -0.2846 REMARK 3 L13: 0.2622 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.1815 S12: -0.9650 S13: 0.8721 REMARK 3 S21: 0.5323 S22: 0.2430 S23: 0.4422 REMARK 3 S31: -0.0359 S32: 0.1243 S33: -0.1195 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5721 18.3013 -16.5846 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.3822 REMARK 3 T33: 0.5634 T12: -0.0258 REMARK 3 T13: -0.0281 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.3683 L22: 5.5115 REMARK 3 L33: 3.5760 L12: 0.7411 REMARK 3 L13: -2.5632 L23: -2.8467 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: -0.3586 S13: -0.7005 REMARK 3 S21: 0.2052 S22: 0.3949 S23: 0.6408 REMARK 3 S31: 0.8396 S32: 0.2053 S33: -0.2949 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6027 45.3743 -22.0276 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.3226 REMARK 3 T33: 0.2798 T12: 0.1738 REMARK 3 T13: -0.0153 T23: 0.1486 REMARK 3 L TENSOR REMARK 3 L11: 1.7123 L22: 3.8157 REMARK 3 L33: 1.4978 L12: 0.4438 REMARK 3 L13: 0.9866 L23: 0.2192 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: 0.2535 S13: 0.1812 REMARK 3 S21: -0.2516 S22: -0.1565 S23: 0.2771 REMARK 3 S31: -0.7329 S32: -0.3269 S33: -0.0849 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8490 43.1947 -21.3946 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.3728 REMARK 3 T33: 0.3186 T12: 0.0686 REMARK 3 T13: -0.0146 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.6947 L22: 2.6282 REMARK 3 L33: 3.7732 L12: 0.0604 REMARK 3 L13: -0.9695 L23: -1.0357 REMARK 3 S TENSOR REMARK 3 S11: 0.1788 S12: 0.1452 S13: 0.3485 REMARK 3 S21: -0.1351 S22: -0.0518 S23: 0.5888 REMARK 3 S31: -0.1322 S32: -0.6096 S33: -0.1372 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9232 30.3701 -19.4852 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.3394 REMARK 3 T33: 0.3218 T12: -0.0347 REMARK 3 T13: -0.0968 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.8130 L22: 2.9235 REMARK 3 L33: 5.4117 L12: -0.3417 REMARK 3 L13: -1.8016 L23: -0.3029 REMARK 3 S TENSOR REMARK 3 S11: 0.1896 S12: 0.1498 S13: -0.4648 REMARK 3 S21: 0.0920 S22: -0.3069 S23: 0.4503 REMARK 3 S31: 0.1477 S32: -0.4667 S33: -0.0410 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0056 31.3869 -17.2141 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.1489 REMARK 3 T33: 0.2202 T12: -0.0217 REMARK 3 T13: 0.0250 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 4.2433 L22: 4.7261 REMARK 3 L33: 4.0619 L12: -1.5695 REMARK 3 L13: -1.0131 L23: 0.7294 REMARK 3 S TENSOR REMARK 3 S11: 0.1807 S12: -0.2465 S13: -0.0683 REMARK 3 S21: 0.0283 S22: 0.0122 S23: 0.0837 REMARK 3 S31: 0.3058 S32: 0.0193 S33: -0.2176 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 206 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3242 38.1490 -11.5113 REMARK 3 T TENSOR REMARK 3 T11: 0.2074 T22: 0.1706 REMARK 3 T33: 0.1964 T12: -0.0185 REMARK 3 T13: 0.0147 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 7.6318 L22: 3.7175 REMARK 3 L33: 0.5082 L12: -2.2107 REMARK 3 L13: -0.2837 L23: 0.1207 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.3018 S13: 0.0411 REMARK 3 S21: 0.3402 S22: -0.0395 S23: -0.1693 REMARK 3 S31: 0.0698 S32: -0.1636 S33: -0.0359 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2614 28.7504 -21.3384 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.2190 REMARK 3 T33: 0.1781 T12: -0.0377 REMARK 3 T13: -0.0231 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.3691 L22: 5.6219 REMARK 3 L33: 0.7147 L12: -1.2442 REMARK 3 L13: 0.6870 L23: -0.4297 REMARK 3 S TENSOR REMARK 3 S11: 0.3517 S12: 0.3234 S13: -0.1297 REMARK 3 S21: -0.0932 S22: -0.2398 S23: -0.0265 REMARK 3 S31: 0.1527 S32: 0.0520 S33: -0.0707 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 18-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 42.10 REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 43.60 REMARK 200 R MERGE FOR SHELL (I) : 0.67900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1FO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CHLORIDE, BIS-TRIS REMARK 280 PROPANE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.10700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 164.21400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.16050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 205.26750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.05350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.10700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 164.21400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 205.26750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 123.16050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.05350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 100 111.98 63.53 REMARK 500 ASP A 102 70.53 -158.21 REMARK 500 LEU A 144 53.23 -92.01 REMARK 500 CYS A 171 -122.34 55.14 REMARK 500 ASN A 172 0.06 -64.91 REMARK 500 ILE A 285 29.60 41.99 REMARK 500 THR B 2 -84.10 -97.73 REMARK 500 ASN B 74 -160.45 -125.75 REMARK 500 LEU B 144 49.49 -90.71 REMARK 500 CYS B 171 -119.20 54.01 REMARK 500 ASN B 172 0.79 -65.26 REMARK 500 SER B 202 34.35 -87.20 REMARK 500 HIS B 284 -80.85 -134.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 494 DISTANCE = 6.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LCG RELATED DB: PDB REMARK 900 RELATED ID: 6LE2 RELATED DB: PDB REMARK 900 RELATED ID: 6LED RELATED DB: PDB DBREF 6LEI A 1 307 UNP K2NMS4 K2NMS4_9RHIZ 1 307 DBREF 6LEI B 1 307 UNP K2NMS4 K2NMS4_9RHIZ 1 307 SEQRES 1 A 307 MET THR ARG ARG ILE ARG ILE GLY GLY ALA GLN MET GLY SEQRES 2 A 307 ALA ILE SER ARG SER ASP SER LYS LYS GLU ILE VAL ASP SEQRES 3 A 307 ARG LEU ILE ALA LEU LEU ARG GLN ALA SER GLU LYS GLY SEQRES 4 A 307 CYS GLU LEU VAL VAL PHE PRO GLU LEU ALA LEU SER THR SEQRES 5 A 307 PHE PHE PRO ARG TRP TYR ALA GLU ARG ASP GLY MET ASP SEQRES 6 A 307 GLY TYR PHE GLU ASP GLY MET PRO ASN ALA ALA THR LEU SEQRES 7 A 307 PRO LEU PHE GLU GLU ALA ARG ARG LEU GLY ILE GLY PHE SEQRES 8 A 307 SER LEU GLY TYR ALA GLU LEU VAL GLN GLU ASP GLY ARG SEQRES 9 A 307 VAL ARG ARG PHE ASN THR THR VAL LEU VAL GLU ARG ASN SEQRES 10 A 307 GLY GLU ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU PRO SEQRES 11 A 307 GLY HIS ALA GLU TYR GLU PRO GLU ARG SER HIS GLN HIS SEQRES 12 A 307 LEU GLU LYS ARG TYR PHE GLU VAL GLY ASN THR GLY PHE SEQRES 13 A 307 GLN VAL TRP ASP ALA PHE GLY GLY ARG VAL GLY MET ALA SEQRES 14 A 307 ILE CYS ASN ASP ARG ARG TRP VAL GLU THR TYR ARG VAL SEQRES 15 A 307 MET GLY LEU GLN ASP VAL GLU LEU ILE LEU ILE GLY TYR SEQRES 16 A 307 ASN THR PRO VAL ALA ASP SER LEU SER GLY GLU SER GLU SEQRES 17 A 307 THR LEU ARG MET PHE HIS ASN HIS LEU THR MET GLN ALA SEQRES 18 A 307 GLY ALA TYR GLN ASN SER THR TRP VAL VAL GLY VAL ALA SEQRES 19 A 307 LYS ALA GLY VAL GLU ASP GLY HIS ARG LEU MET GLY GLY SEQRES 20 A 307 SER VAL ILE VAL ALA PRO THR GLY GLU ILE VAL ALA GLN SEQRES 21 A 307 ALA MET THR GLU GLY ASP GLU LEU ILE VAL ALA ASP CYS SEQRES 22 A 307 ASP LEU ASP ARG CYS ARG TYR TYR LYS SER HIS ILE PHE SEQRES 23 A 307 ASN PHE ALA ALA HIS ARG ARG PRO GLU PHE TYR GLN ARG SEQRES 24 A 307 ILE THR SER GLN THR GLY VAL GLU SEQRES 1 B 307 MET THR ARG ARG ILE ARG ILE GLY GLY ALA GLN MET GLY SEQRES 2 B 307 ALA ILE SER ARG SER ASP SER LYS LYS GLU ILE VAL ASP SEQRES 3 B 307 ARG LEU ILE ALA LEU LEU ARG GLN ALA SER GLU LYS GLY SEQRES 4 B 307 CYS GLU LEU VAL VAL PHE PRO GLU LEU ALA LEU SER THR SEQRES 5 B 307 PHE PHE PRO ARG TRP TYR ALA GLU ARG ASP GLY MET ASP SEQRES 6 B 307 GLY TYR PHE GLU ASP GLY MET PRO ASN ALA ALA THR LEU SEQRES 7 B 307 PRO LEU PHE GLU GLU ALA ARG ARG LEU GLY ILE GLY PHE SEQRES 8 B 307 SER LEU GLY TYR ALA GLU LEU VAL GLN GLU ASP GLY ARG SEQRES 9 B 307 VAL ARG ARG PHE ASN THR THR VAL LEU VAL GLU ARG ASN SEQRES 10 B 307 GLY GLU ILE VAL GLY LYS TYR ARG LYS ILE HIS LEU PRO SEQRES 11 B 307 GLY HIS ALA GLU TYR GLU PRO GLU ARG SER HIS GLN HIS SEQRES 12 B 307 LEU GLU LYS ARG TYR PHE GLU VAL GLY ASN THR GLY PHE SEQRES 13 B 307 GLN VAL TRP ASP ALA PHE GLY GLY ARG VAL GLY MET ALA SEQRES 14 B 307 ILE CYS ASN ASP ARG ARG TRP VAL GLU THR TYR ARG VAL SEQRES 15 B 307 MET GLY LEU GLN ASP VAL GLU LEU ILE LEU ILE GLY TYR SEQRES 16 B 307 ASN THR PRO VAL ALA ASP SER LEU SER GLY GLU SER GLU SEQRES 17 B 307 THR LEU ARG MET PHE HIS ASN HIS LEU THR MET GLN ALA SEQRES 18 B 307 GLY ALA TYR GLN ASN SER THR TRP VAL VAL GLY VAL ALA SEQRES 19 B 307 LYS ALA GLY VAL GLU ASP GLY HIS ARG LEU MET GLY GLY SEQRES 20 B 307 SER VAL ILE VAL ALA PRO THR GLY GLU ILE VAL ALA GLN SEQRES 21 B 307 ALA MET THR GLU GLY ASP GLU LEU ILE VAL ALA ASP CYS SEQRES 22 B 307 ASP LEU ASP ARG CYS ARG TYR TYR LYS SER HIS ILE PHE SEQRES 23 B 307 ASN PHE ALA ALA HIS ARG ARG PRO GLU PHE TYR GLN ARG SEQRES 24 B 307 ILE THR SER GLN THR GLY VAL GLU HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *180(H2 O) HELIX 1 AA1 SER A 20 LYS A 38 1 19 HELIX 2 AA2 PHE A 53 TRP A 57 5 5 HELIX 3 AA3 ASP A 62 PHE A 68 5 7 HELIX 4 AA4 THR A 77 GLY A 88 1 12 HELIX 5 AA5 LEU A 144 PHE A 149 1 6 HELIX 6 AA6 ASN A 172 ARG A 175 5 4 HELIX 7 AA7 TRP A 176 LEU A 185 1 10 HELIX 8 AA8 SER A 207 GLN A 225 1 19 HELIX 9 AA9 LEU A 275 HIS A 284 1 10 HELIX 10 AB1 ASN A 287 ARG A 292 1 6 HELIX 11 AB2 ARG A 293 TYR A 297 5 5 HELIX 12 AB3 GLN A 298 GLN A 303 1 6 HELIX 13 AB4 SER B 20 LYS B 38 1 19 HELIX 14 AB5 PHE B 53 TRP B 57 5 5 HELIX 15 AB6 MET B 64 PHE B 68 5 5 HELIX 16 AB7 THR B 77 GLY B 88 1 12 HELIX 17 AB8 LEU B 144 PHE B 149 1 6 HELIX 18 AB9 ASN B 172 ARG B 175 5 4 HELIX 19 AC1 TRP B 176 LEU B 185 1 10 HELIX 20 AC2 SER B 204 GLN B 225 1 22 HELIX 21 AC3 CYS B 278 HIS B 284 1 7 HELIX 22 AC4 ASN B 287 ARG B 292 1 6 HELIX 23 AC5 ARG B 293 PHE B 296 5 4 HELIX 24 AC6 TYR B 297 GLN B 303 1 7 SHEET 1 AA1 6 ILE A 120 ARG A 125 0 SHEET 2 AA1 6 ARG A 107 VAL A 114 -1 N THR A 111 O TYR A 124 SHEET 3 AA1 6 GLY A 90 LEU A 98 -1 N TYR A 95 O THR A 110 SHEET 4 AA1 6 LEU A 42 VAL A 44 1 N VAL A 43 O GLY A 90 SHEET 5 AA1 6 ARG A 4 GLN A 11 1 N GLY A 8 O LEU A 42 SHEET 6 AA1 6 GLU A 267 ASP A 274 -1 O ILE A 269 N GLY A 9 SHEET 1 AA2 6 VAL A 158 ALA A 161 0 SHEET 2 AA2 6 GLY A 164 ILE A 170 -1 O VAL A 166 N TRP A 159 SHEET 3 AA2 6 LEU A 190 TYR A 195 1 O LEU A 190 N GLY A 167 SHEET 4 AA2 6 TRP A 229 ALA A 234 1 O TRP A 229 N ILE A 191 SHEET 5 AA2 6 VAL A 249 VAL A 251 -1 O VAL A 249 N GLY A 232 SHEET 6 AA2 6 ILE A 257 GLN A 260 -1 O ALA A 259 N ILE A 250 SHEET 1 AA3 2 GLY A 237 GLU A 239 0 SHEET 2 AA3 2 HIS A 242 LEU A 244 -1 O HIS A 242 N GLU A 239 SHEET 1 AA4 6 ILE B 120 ARG B 125 0 SHEET 2 AA4 6 VAL B 105 VAL B 114 -1 N LEU B 113 O VAL B 121 SHEET 3 AA4 6 GLY B 90 GLN B 100 -1 N PHE B 91 O VAL B 114 SHEET 4 AA4 6 LEU B 42 VAL B 44 1 N VAL B 43 O GLY B 90 SHEET 5 AA4 6 ARG B 4 GLN B 11 1 N GLY B 8 O LEU B 42 SHEET 6 AA4 6 GLU B 267 ASP B 274 -1 O ILE B 269 N GLY B 9 SHEET 1 AA5 6 VAL B 158 ALA B 161 0 SHEET 2 AA5 6 GLY B 164 ILE B 170 -1 O VAL B 166 N TRP B 159 SHEET 3 AA5 6 LEU B 190 TYR B 195 1 O LEU B 190 N GLY B 167 SHEET 4 AA5 6 TRP B 229 ALA B 234 1 O TRP B 229 N ILE B 191 SHEET 5 AA5 6 VAL B 249 VAL B 251 -1 O VAL B 251 N VAL B 230 SHEET 6 AA5 6 ILE B 257 GLN B 260 -1 O VAL B 258 N ILE B 250 SHEET 1 AA6 3 PRO B 198 VAL B 199 0 SHEET 2 AA6 3 HIS B 242 LEU B 244 -1 O ARG B 243 N VAL B 199 SHEET 3 AA6 3 GLY B 237 GLU B 239 -1 N GLU B 239 O HIS B 242 CISPEP 1 MET A 72 PRO A 73 0 -0.16 CISPEP 2 MET B 72 PRO B 73 0 -0.80 SITE 1 AC1 2 TYR B 67 HOH B 503 SITE 1 AC2 6 ARG B 174 THR B 197 ARG B 211 HOH B 505 SITE 2 AC2 6 HOH B 513 HOH B 517 SITE 1 AC3 2 ASP B 160 GLY B 164 SITE 1 AC4 3 ARG B 147 PHE B 149 GLU B 150 SITE 1 AC5 2 HOH A 429 THR B 209 CRYST1 93.617 93.617 246.321 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010682 0.006167 0.000000 0.00000 SCALE2 0.000000 0.012334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004060 0.00000