HEADER HYDROLASE 02-DEC-19 6LFH TITLE X-RAY CRYSTAL STRUCTURE OF CHEMICALLY SYNTHESIZED HUMAN LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS HUMAN LYSOZYME, CHEMICAL PROTEIN SYNTHESIS, ONE-POT NATIVE CHEMICAL KEYWDS 2 LIGATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KAR,A.DAS,K.MANDAL REVDAT 3 22-NOV-23 6LFH 1 REMARK REVDAT 2 17-MAR-21 6LFH 1 JRNL LINK REVDAT 1 08-JUL-20 6LFH 0 JRNL AUTH A.KAR,J.MANNUTHODIKAYIL,S.SINGH,A.BISWAS,P.DUBEY,A.DAS, JRNL AUTH 2 K.MANDAL JRNL TITL EFFICIENT CHEMICAL PROTEIN SYNTHESIS USING FMOC-MASKED JRNL TITL 2 N-TERMINAL CYSTEINE IN PEPTIDE THIOESTER SEGMENTS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 59 14796 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 32333711 JRNL DOI 10.1002/ANIE.202000491 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 19724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6100 - 2.8000 0.99 2882 152 0.1512 0.1776 REMARK 3 2 2.8000 - 2.2200 1.00 2789 139 0.1660 0.2152 REMARK 3 3 2.2200 - 1.9400 1.00 2743 148 0.1490 0.1768 REMARK 3 4 1.9400 - 1.7600 1.00 2719 149 0.1580 0.1902 REMARK 3 5 1.7600 - 1.6400 0.99 2696 142 0.1585 0.1938 REMARK 3 6 1.6400 - 1.5400 0.99 2703 141 0.1944 0.2485 REMARK 3 7 1.5400 - 1.4600 0.81 2203 118 0.2753 0.2940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6100 11.2462 -4.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0929 REMARK 3 T33: 0.0510 T12: -0.0011 REMARK 3 T13: 0.0105 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.0980 L22: 2.9112 REMARK 3 L33: 2.3580 L12: -0.5101 REMARK 3 L13: 0.3527 L23: 0.9722 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: -0.1847 S13: 0.0010 REMARK 3 S21: 0.1909 S22: 0.0076 S23: 0.2055 REMARK 3 S31: 0.0293 S32: -0.0430 S33: 0.0441 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 15 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2754 19.0347 -11.8024 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.0894 REMARK 3 T33: 0.0729 T12: 0.0098 REMARK 3 T13: 0.0060 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.8344 L22: 2.3913 REMARK 3 L33: 1.6263 L12: 0.2862 REMARK 3 L13: -0.0098 L23: 0.2013 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: -0.0453 S13: -0.0357 REMARK 3 S21: -0.0165 S22: -0.0241 S23: 0.0072 REMARK 3 S31: -0.0715 S32: -0.0926 S33: -0.0116 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 37 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7485 4.2900 -23.2154 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.1814 REMARK 3 T33: 0.1304 T12: -0.0173 REMARK 3 T13: 0.0316 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.9075 L22: 0.2143 REMARK 3 L33: 4.5086 L12: -0.5556 REMARK 3 L13: -2.4206 L23: 0.7257 REMARK 3 S TENSOR REMARK 3 S11: -0.1551 S12: 0.2533 S13: -0.1090 REMARK 3 S21: -0.1664 S22: -0.0785 S23: 0.0085 REMARK 3 S31: 0.2827 S32: -0.1104 S33: 0.2013 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 51 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1305 7.2217 -22.4606 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.1232 REMARK 3 T33: 0.1639 T12: -0.0050 REMARK 3 T13: 0.0653 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.1639 L22: 1.4059 REMARK 3 L33: 1.1681 L12: -0.7381 REMARK 3 L13: -0.5397 L23: 0.7616 REMARK 3 S TENSOR REMARK 3 S11: 0.2477 S12: 0.1402 S13: 0.3613 REMARK 3 S21: -0.3319 S22: 0.0029 S23: -0.4472 REMARK 3 S31: -0.1749 S32: 0.0772 S33: -0.1953 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 80 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7095 16.4217 -17.1616 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.1104 REMARK 3 T33: 0.0916 T12: 0.0003 REMARK 3 T13: 0.0106 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.8296 L22: 1.9123 REMARK 3 L33: 0.8772 L12: -0.2476 REMARK 3 L13: 0.5045 L23: -0.1108 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: 0.0682 S13: 0.0840 REMARK 3 S21: -0.1321 S22: 0.0301 S23: -0.1436 REMARK 3 S31: -0.0564 S32: -0.0034 S33: 0.0203 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 122 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1772 21.9049 -6.3830 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.1976 REMARK 3 T33: 0.2089 T12: 0.0591 REMARK 3 T13: 0.0393 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.5323 L22: 4.7457 REMARK 3 L33: 2.5769 L12: -0.7140 REMARK 3 L13: -0.4594 L23: 0.0977 REMARK 3 S TENSOR REMARK 3 S11: 0.1725 S12: -0.0655 S13: 0.3586 REMARK 3 S21: -0.0745 S22: -0.0645 S23: 0.3144 REMARK 3 S31: -0.6206 S32: -0.5002 S33: -0.0699 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : EXCILLUM METALJET D2+ 70 KV REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : AXO MIRRORS FOR GALLIUM K-APLHA REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19745 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 30.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 9.228 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.35 REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2NWD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LYSOZYME SAMPLE (14 MG/ML) IN 2.5 MM REMARK 280 HEPES, 0.12 M LITHIUM CHLORIDE MIXED WITH RESERVOIR SOLUTION REMARK 280 CONTAINING 30 MM SODIUM PHOSPHATE, 2.5 M SODIUM CHLORIDE, PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.61000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.61000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS X 116 -37.82 -133.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 78 O REMARK 620 2 ASN X 118 OD1 33.9 REMARK 620 3 HOH X 412 O 83.0 52.2 REMARK 620 4 HOH X 426 O 86.8 114.9 165.6 REMARK 620 5 HOH X 453 O 99.8 111.8 93.1 98.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU X 85 O REMARK 620 2 ASP X 102 O 34.6 REMARK 620 3 PRO X 103 O 31.7 4.2 REMARK 620 4 HOH X 325 O 30.1 7.4 8.6 REMARK 620 5 HOH X 384 O 27.0 7.6 5.5 6.0 REMARK 620 6 HOH X 433 O 35.2 3.9 7.6 5.6 8.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL X 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL X 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL X 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL X 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL X 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL X 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA X 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA X 208 DBREF 6LFH X 1 130 UNP P61626 LYSC_HUMAN 19 148 SEQRES 1 X 130 LYS VAL PHE GLU ARG CYS GLU LEU ALA ARG THR LEU LYS SEQRES 2 X 130 ARG LEU GLY MET ASP GLY TYR ARG GLY ILE SER LEU ALA SEQRES 3 X 130 ASN TRP MET CYS LEU ALA LYS TRP GLU SER GLY TYR ASN SEQRES 4 X 130 THR ARG ALA THR ASN TYR ASN ALA GLY ASP ARG SER THR SEQRES 5 X 130 ASP TYR GLY ILE PHE GLN ILE ASN SER ARG TYR TRP CYS SEQRES 6 X 130 ASN ASP GLY LYS THR PRO GLY ALA VAL ASN ALA CYS HIS SEQRES 7 X 130 LEU SER CYS SER ALA LEU LEU GLN ASP ASN ILE ALA ASP SEQRES 8 X 130 ALA VAL ALA CYS ALA LYS ARG VAL VAL ARG ASP PRO GLN SEQRES 9 X 130 GLY ILE ARG ALA TRP VAL ALA TRP ARG ASN ARG CYS GLN SEQRES 10 X 130 ASN ARG ASP VAL ARG GLN TYR VAL GLN GLY CYS GLY VAL HET CL X 201 1 HET CL X 202 1 HET CL X 203 1 HET CL X 204 1 HET CL X 205 1 HET CL X 206 1 HET NA X 207 1 HET NA X 208 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CL 6(CL 1-) FORMUL 8 NA 2(NA 1+) FORMUL 10 HOH *213(H2 O) HELIX 1 AA1 GLU X 4 LEU X 15 1 12 HELIX 2 AA2 GLY X 19 ILE X 23 5 5 HELIX 3 AA3 SER X 24 GLY X 37 1 14 HELIX 4 AA4 SER X 80 GLN X 86 5 7 HELIX 5 AA5 ILE X 89 ARG X 101 1 13 HELIX 6 AA6 GLN X 104 ALA X 108 5 5 HELIX 7 AA7 TRP X 109 CYS X 116 1 8 HELIX 8 AA8 VAL X 121 VAL X 125 5 5 SHEET 1 AA1 3 THR X 43 TYR X 45 0 SHEET 2 AA1 3 THR X 52 TYR X 54 -1 O ASP X 53 N ASN X 44 SHEET 3 AA1 3 ILE X 59 ASN X 60 -1 O ILE X 59 N TYR X 54 SSBOND 1 CYS X 6 CYS X 128 1555 1555 2.04 SSBOND 2 CYS X 30 CYS X 116 1555 1555 2.05 SSBOND 3 CYS X 65 CYS X 81 1555 1555 2.05 SSBOND 4 CYS X 77 CYS X 95 1555 1555 2.04 LINK O HIS X 78 NA NA X 208 1555 1555 2.16 LINK O LEU X 85 NA NA X 207 1555 3544 2.57 LINK O ASP X 102 NA NA X 207 1555 1555 2.78 LINK O PRO X 103 NA NA X 207 1555 1555 2.43 LINK OD1 ASN X 118 NA NA X 208 1555 3554 2.26 LINK NA NA X 207 O HOH X 325 1555 1555 2.45 LINK NA NA X 207 O HOH X 384 1555 1555 2.39 LINK NA NA X 207 O HOH X 433 1555 1555 2.33 LINK NA NA X 208 O HOH X 412 1555 1555 2.59 LINK NA NA X 208 O HOH X 426 1555 1555 2.40 LINK NA NA X 208 O HOH X 453 1555 3544 2.43 SITE 1 AC1 2 ASN X 27 ASN X 66 SITE 1 AC2 2 ASN X 75 HOH X 454 SITE 1 AC3 2 LYS X 97 HOH X 498 SITE 1 AC4 3 LEU X 25 ALA X 26 HOH X 446 SITE 1 AC5 3 ASN X 88 GLY X 127 GLY X 129 SITE 1 AC6 2 SER X 80 ARG X 107 SITE 1 AC7 7 LEU X 85 ASP X 102 PRO X 103 GLY X 105 SITE 2 AC7 7 HOH X 325 HOH X 384 HOH X 433 SITE 1 AC8 5 HIS X 78 ASN X 118 HOH X 412 HOH X 426 SITE 2 AC8 5 HOH X 453 CRYST1 32.950 56.410 61.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016335 0.00000