HEADER VIRAL PROTEIN 06-DEC-19 6LGX TITLE STRUCTURE OF RABIES VIRUS GLYCOPROTEIN AT BASIC PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN,GLYCOPROTEIN,GLYCOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RABIES LYSSAVIRUS; SOURCE 3 ORGANISM_TAXID: 11292; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS FUNCTIONAL CLASS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.L.YANG,S.LIN,F.YE,J.YANG,J.X.QI,Z.J.CHEN,X.LIN,J.C.WANG,D.YUE, AUTHOR 2 Y.W.CHENG,Z.M.CHEN,H.CHEN,Y.YOU,Z.L.ZHANG,Y.YANG,M.YANG,H.L.SUN, AUTHOR 3 Y.H.LI,Y.CAO,S.Y.YANG,Y.Q.WEI,G.F.GAO,G.W.LU REVDAT 4 09-OCT-24 6LGX 1 REMARK REVDAT 3 22-NOV-23 6LGX 1 REMARK REVDAT 2 01-APR-20 6LGX 1 JRNL REVDAT 1 19-FEB-20 6LGX 0 JRNL AUTH F.YANG,S.LIN,F.YE,J.YANG,J.QI,Z.CHEN,X.LIN,J.WANG,D.YUE, JRNL AUTH 2 Y.CHENG,Z.CHEN,H.CHEN,Y.YOU,Z.ZHANG,Y.YANG,M.YANG,H.SUN, JRNL AUTH 3 Y.LI,Y.CAO,S.YANG,Y.WEI,G.F.GAO,G.LU JRNL TITL STRUCTURAL ANALYSIS OF RABIES VIRUS GLYCOPROTEIN REVEALS JRNL TITL 2 PH-DEPENDENT CONFORMATIONAL CHANGES AND INTERACTIONS WITH A JRNL TITL 3 NEUTRALIZING ANTIBODY. JRNL REF CELL HOST MICROBE V. 27 441 2020 JRNL REFN ESSN 1934-6069 JRNL PMID 32004500 JRNL DOI 10.1016/J.CHOM.2019.12.012 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16-3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3980 - 6.6657 0.99 2777 144 0.2229 0.2521 REMARK 3 2 6.6657 - 5.2931 1.00 2781 133 0.2483 0.2709 REMARK 3 3 5.2931 - 4.6246 1.00 2752 131 0.2003 0.2483 REMARK 3 4 4.6246 - 4.2021 1.00 2761 135 0.2040 0.2329 REMARK 3 5 4.2021 - 3.9010 1.00 2741 134 0.2274 0.3091 REMARK 3 6 3.9010 - 3.6711 0.99 2706 142 0.2789 0.3078 REMARK 3 7 3.6711 - 3.4873 1.00 2734 147 0.3004 0.4080 REMARK 3 8 3.4873 - 3.3356 1.00 2746 137 0.3083 0.3797 REMARK 3 9 3.3356 - 3.2072 1.00 2705 115 0.3410 0.3836 REMARK 3 10 3.2072 - 3.0970 0.95 2609 126 0.3982 0.4397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 123.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5851 REMARK 3 ANGLE : 0.739 7934 REMARK 3 CHIRALITY : 0.048 873 REMARK 3 PLANARITY : 0.006 1008 REMARK 3 DIHEDRAL : 14.784 3564 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 42.6220 23.2452 14.9364 REMARK 3 T TENSOR REMARK 3 T11: 0.5812 T22: 0.5983 REMARK 3 T33: 0.6259 T12: 0.0271 REMARK 3 T13: 0.0523 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 0.0862 L22: 0.2929 REMARK 3 L33: 1.2198 L12: 0.0934 REMARK 3 L13: 0.3157 L23: 0.2595 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.0059 S13: 0.0082 REMARK 3 S21: 0.1656 S22: -0.0617 S23: 0.0118 REMARK 3 S31: -0.0949 S32: -0.0262 S33: 0.0247 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28680 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.097 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LGW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, 14% POLYETHYLENE GLYCOL REMARK 280 300, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.22000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.22350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.22000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 69.22350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -10.69041 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 60.50483 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -3 REMARK 465 ASP A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 THR A 72 REMARK 465 TYR A 73 REMARK 465 THR A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 GLY A 78 REMARK 465 GLY A 79 REMARK 465 THR A 80 REMARK 465 GLU A 113 REMARK 465 GLU A 114 REMARK 465 SER A 115 REMARK 465 LEU A 116 REMARK 465 HIS A 117 REMARK 465 ASN A 118 REMARK 465 PRO A 119 REMARK 465 TYR A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 GLN A 256 REMARK 465 LEU A 257 REMARK 465 VAL A 258 REMARK 465 ASN A 259 REMARK 465 LEU A 260 REMARK 465 HIS A 261 REMARK 465 ASP A 262 REMARK 465 PHE A 263 REMARK 465 ARG A 264 REMARK 465 SER A 265 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 ILE A 268 REMARK 465 GLU A 269 REMARK 465 LEU A 420 REMARK 465 PRO A 421 REMARK 465 ASP A 422 REMARK 465 VAL A 423 REMARK 465 TYR A 424 REMARK 465 LYS A 425 REMARK 465 GLN A 426 REMARK 465 ILE A 427 REMARK 465 SER A 428 REMARK 465 GLY A 429 REMARK 465 VAL A 430 REMARK 465 ASP A 431 REMARK 465 LEU A 432 REMARK 465 GLY A 433 REMARK 465 LEU A 434 REMARK 465 PRO A 435 REMARK 465 ASN A 436 REMARK 465 TRP A 437 REMARK 465 GLY A 438 REMARK 465 LYS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 ALA B -3 REMARK 465 ASP B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 LYS B 1 REMARK 465 GLU B 69 REMARK 465 ALA B 70 REMARK 465 GLU B 71 REMARK 465 THR B 72 REMARK 465 TYR B 73 REMARK 465 THR B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 SER B 77 REMARK 465 GLY B 78 REMARK 465 GLY B 79 REMARK 465 THR B 80 REMARK 465 THR B 81 REMARK 465 PHE B 82 REMARK 465 LYS B 83 REMARK 465 GLU B 113 REMARK 465 GLU B 114 REMARK 465 SER B 115 REMARK 465 LEU B 116 REMARK 465 HIS B 117 REMARK 465 ASN B 118 REMARK 465 PRO B 119 REMARK 465 TYR B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 ARG B 126 REMARK 465 THR B 127 REMARK 465 THR B 128 REMARK 465 LYS B 129 REMARK 465 GLN B 256 REMARK 465 LEU B 257 REMARK 465 VAL B 258 REMARK 465 ASN B 259 REMARK 465 LEU B 260 REMARK 465 HIS B 261 REMARK 465 ASP B 262 REMARK 465 PHE B 263 REMARK 465 ARG B 264 REMARK 465 SER B 265 REMARK 465 ASP B 266 REMARK 465 GLU B 267 REMARK 465 ILE B 268 REMARK 465 GLU B 269 REMARK 465 HIS B 270 REMARK 465 LEU B 271 REMARK 465 VAL B 272 REMARK 465 VAL B 273 REMARK 465 GLU B 274 REMARK 465 GLU B 275 REMARK 465 LEU B 276 REMARK 465 GLY B 409 REMARK 465 ASP B 410 REMARK 465 GLU B 411 REMARK 465 ALA B 412 REMARK 465 GLU B 413 REMARK 465 ASP B 414 REMARK 465 PHE B 415 REMARK 465 VAL B 416 REMARK 465 GLU B 417 REMARK 465 VAL B 418 REMARK 465 HIS B 419 REMARK 465 LEU B 420 REMARK 465 PRO B 421 REMARK 465 ASP B 422 REMARK 465 VAL B 423 REMARK 465 TYR B 424 REMARK 465 LYS B 425 REMARK 465 GLN B 426 REMARK 465 ILE B 427 REMARK 465 SER B 428 REMARK 465 GLY B 429 REMARK 465 VAL B 430 REMARK 465 ASP B 431 REMARK 465 LEU B 432 REMARK 465 GLY B 433 REMARK 465 LEU B 434 REMARK 465 PRO B 435 REMARK 465 ASN B 436 REMARK 465 TRP B 437 REMARK 465 GLY B 438 REMARK 465 LYS B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 HIS B 442 REMARK 465 HIS B 443 REMARK 465 HIS B 444 REMARK 465 HIS B 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 369 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 37 O SER B 201 1.31 REMARK 500 SG CYS B 159 SG CYS B 169 1.57 REMARK 500 SG CYS B 35 O ALA B 200 1.95 REMARK 500 OH TYR B 145 O CYS B 252 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 320 CD1 LEU B 395 1556 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 207 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -60.06 -100.59 REMARK 500 ASP A 32 75.97 46.85 REMARK 500 LYS A 83 52.67 -141.81 REMARK 500 PRO A 183 172.78 -55.59 REMARK 500 CYS A 189 14.07 -68.75 REMARK 500 ASN A 202 -169.27 69.39 REMARK 500 LEU A 225 138.53 -170.32 REMARK 500 ASP A 247 -170.04 63.48 REMARK 500 LYS A 294 12.70 56.21 REMARK 500 PHE A 359 -79.26 -92.89 REMARK 500 PRO B 25 176.51 -59.67 REMARK 500 ASN B 27 70.74 62.29 REMARK 500 ASP B 32 -123.15 53.68 REMARK 500 GLU B 33 4.16 87.17 REMARK 500 SER B 39 138.09 -172.03 REMARK 500 ASP B 146 21.07 -142.07 REMARK 500 THR B 163 -176.34 -63.63 REMARK 500 SER B 165 -12.81 -142.25 REMARK 500 THR B 167 -12.75 62.88 REMARK 500 ASN B 202 -70.47 -99.73 REMARK 500 ASP B 368 28.05 -140.46 REMARK 500 ASP B 401 21.69 83.99 REMARK 500 SER B 403 -148.19 169.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LGX A 1 74 UNP Q5JZZ2 Q5JZZ2_9RHAB 20 91 DBREF 6LGX A 80 120 UNP Q2Z2I1 Q2Z2I1_9RHAB 72 108 DBREF 6LGX A 126 439 UNP D8VEC1 D8VEC1_9RHAB 145 458 DBREF 6LGX B 1 74 UNP Q5JZZ2 Q5JZZ2_9RHAB 20 91 DBREF 6LGX B 80 120 UNP Q2Z2I1 Q2Z2I1_9RHAB 72 108 DBREF 6LGX B 126 439 UNP D8VEC1 D8VEC1_9RHAB 145 458 SEQADV 6LGX ALA A -3 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX ASP A -2 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX GLU A -1 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX PHE A 0 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX GLY A 75 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY A 76 UNP Q5JZZ2 LINKER SEQADV 6LGX SER A 77 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY A 78 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY A 79 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY A 121 UNP Q2Z2I1 LINKER SEQADV 6LGX GLY A 122 UNP Q2Z2I1 LINKER SEQADV 6LGX SER A 123 UNP Q2Z2I1 LINKER SEQADV 6LGX GLY A 124 UNP Q2Z2I1 LINKER SEQADV 6LGX GLY A 125 UNP Q2Z2I1 LINKER SEQADV 6LGX HIS A 440 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS A 441 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS A 442 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS A 443 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS A 444 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS A 445 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX ALA B -3 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX ASP B -2 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX GLU B -1 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX PHE B 0 UNP Q5JZZ2 EXPRESSION TAG SEQADV 6LGX GLY B 75 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY B 76 UNP Q5JZZ2 LINKER SEQADV 6LGX SER B 77 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY B 78 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY B 79 UNP Q5JZZ2 LINKER SEQADV 6LGX GLY B 121 UNP Q2Z2I1 LINKER SEQADV 6LGX GLY B 122 UNP Q2Z2I1 LINKER SEQADV 6LGX SER B 123 UNP Q2Z2I1 LINKER SEQADV 6LGX GLY B 124 UNP Q2Z2I1 LINKER SEQADV 6LGX GLY B 125 UNP Q2Z2I1 LINKER SEQADV 6LGX HIS B 440 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS B 441 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS B 442 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS B 443 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS B 444 UNP D8VEC1 EXPRESSION TAG SEQADV 6LGX HIS B 445 UNP D8VEC1 EXPRESSION TAG SEQRES 1 A 443 ALA ASP GLU PHE LYS PHE PRO ILE TYR THR ILE PRO ASP SEQRES 2 A 443 GLU LEU GLY PRO TRP SER PRO ILE ASP ILE HIS HIS LEU SEQRES 3 A 443 SER CYS PRO ASN ASN LEU VAL VAL GLU ASP GLU GLY CYS SEQRES 4 A 443 THR ASN LEU SER GLU PHE SER TYR MET GLU LEU LYS VAL SEQRES 5 A 443 GLY TYR ILE SER ALA ILE LYS VAL ASN GLY PHE THR CYS SEQRES 6 A 443 THR GLY VAL VAL THR GLU ALA GLU THR TYR THR GLY GLY SEQRES 7 A 443 SER GLY GLY THR THR PHE LYS ARG LYS HIS PHE ARG PRO SEQRES 8 A 443 THR PRO ASP ALA CYS ARG ALA ALA TYR ASN TRP LYS MET SEQRES 9 A 443 ALA GLY ASP PRO ARG TYR GLU GLU SER LEU HIS ASN PRO SEQRES 10 A 443 TYR GLY GLY SER GLY GLY ARG THR THR LYS GLU SER LEU SEQRES 11 A 443 ILE ILE ILE SER PRO SER VAL THR ASP LEU ASP PRO TYR SEQRES 12 A 443 ASP LYS SER LEU HIS SER ARG VAL PHE PRO GLY GLY LYS SEQRES 13 A 443 CYS SER GLY ILE THR VAL SER SER THR TYR CYS SER THR SEQRES 14 A 443 ASN HIS ASP TYR THR ILE TRP MET PRO GLU ASN PRO ARG SEQRES 15 A 443 PRO ARG THR PRO CYS ASP ILE PHE THR ASN SER ARG GLY SEQRES 16 A 443 LYS ARG ALA SER ASN GLY ASN LYS THR CYS GLY PHE VAL SEQRES 17 A 443 ASP GLU ARG GLY LEU TYR LYS SER LEU LYS GLY ALA CYS SEQRES 18 A 443 ARG LEU LYS LEU CYS GLY VAL LEU GLY LEU ARG LEU MET SEQRES 19 A 443 ASP GLY THR TRP VAL ALA MET GLN THR SER ASP GLU THR SEQRES 20 A 443 LYS TRP CYS PRO PRO ASP GLN LEU VAL ASN LEU HIS ASP SEQRES 21 A 443 PHE ARG SER ASP GLU ILE GLU HIS LEU VAL VAL GLU GLU SEQRES 22 A 443 LEU VAL LYS LYS ARG GLU GLU CYS LEU ASP ALA LEU GLU SEQRES 23 A 443 SER ILE MET THR THR LYS SER VAL SER PHE ARG ARG LEU SEQRES 24 A 443 SER HIS LEU ARG LYS LEU VAL PRO GLY PHE GLY LYS ALA SEQRES 25 A 443 TYR THR ILE PHE ASN LYS THR LEU MET GLU ALA ASP ALA SEQRES 26 A 443 HIS TYR LYS SER VAL ARG THR TRP ASN GLU ILE ILE PRO SEQRES 27 A 443 SER LYS GLY CYS LEU LYS VAL GLY GLY ARG CYS HIS PRO SEQRES 28 A 443 HIS VAL ASN GLY VAL PHE PHE ASN GLY ILE ILE LEU GLY SEQRES 29 A 443 PRO ASP ASP HIS VAL LEU ILE PRO GLU MET GLN SER SER SEQRES 30 A 443 LEU LEU GLN GLN HIS MET GLU LEU LEU LYS SER SER VAL SEQRES 31 A 443 ILE PRO LEU MET HIS PRO LEU ALA ASP PRO SER THR VAL SEQRES 32 A 443 PHE LYS GLU GLY ASP GLU ALA GLU ASP PHE VAL GLU VAL SEQRES 33 A 443 HIS LEU PRO ASP VAL TYR LYS GLN ILE SER GLY VAL ASP SEQRES 34 A 443 LEU GLY LEU PRO ASN TRP GLY LYS HIS HIS HIS HIS HIS SEQRES 35 A 443 HIS SEQRES 1 B 443 ALA ASP GLU PHE LYS PHE PRO ILE TYR THR ILE PRO ASP SEQRES 2 B 443 GLU LEU GLY PRO TRP SER PRO ILE ASP ILE HIS HIS LEU SEQRES 3 B 443 SER CYS PRO ASN ASN LEU VAL VAL GLU ASP GLU GLY CYS SEQRES 4 B 443 THR ASN LEU SER GLU PHE SER TYR MET GLU LEU LYS VAL SEQRES 5 B 443 GLY TYR ILE SER ALA ILE LYS VAL ASN GLY PHE THR CYS SEQRES 6 B 443 THR GLY VAL VAL THR GLU ALA GLU THR TYR THR GLY GLY SEQRES 7 B 443 SER GLY GLY THR THR PHE LYS ARG LYS HIS PHE ARG PRO SEQRES 8 B 443 THR PRO ASP ALA CYS ARG ALA ALA TYR ASN TRP LYS MET SEQRES 9 B 443 ALA GLY ASP PRO ARG TYR GLU GLU SER LEU HIS ASN PRO SEQRES 10 B 443 TYR GLY GLY SER GLY GLY ARG THR THR LYS GLU SER LEU SEQRES 11 B 443 ILE ILE ILE SER PRO SER VAL THR ASP LEU ASP PRO TYR SEQRES 12 B 443 ASP LYS SER LEU HIS SER ARG VAL PHE PRO GLY GLY LYS SEQRES 13 B 443 CYS SER GLY ILE THR VAL SER SER THR TYR CYS SER THR SEQRES 14 B 443 ASN HIS ASP TYR THR ILE TRP MET PRO GLU ASN PRO ARG SEQRES 15 B 443 PRO ARG THR PRO CYS ASP ILE PHE THR ASN SER ARG GLY SEQRES 16 B 443 LYS ARG ALA SER ASN GLY ASN LYS THR CYS GLY PHE VAL SEQRES 17 B 443 ASP GLU ARG GLY LEU TYR LYS SER LEU LYS GLY ALA CYS SEQRES 18 B 443 ARG LEU LYS LEU CYS GLY VAL LEU GLY LEU ARG LEU MET SEQRES 19 B 443 ASP GLY THR TRP VAL ALA MET GLN THR SER ASP GLU THR SEQRES 20 B 443 LYS TRP CYS PRO PRO ASP GLN LEU VAL ASN LEU HIS ASP SEQRES 21 B 443 PHE ARG SER ASP GLU ILE GLU HIS LEU VAL VAL GLU GLU SEQRES 22 B 443 LEU VAL LYS LYS ARG GLU GLU CYS LEU ASP ALA LEU GLU SEQRES 23 B 443 SER ILE MET THR THR LYS SER VAL SER PHE ARG ARG LEU SEQRES 24 B 443 SER HIS LEU ARG LYS LEU VAL PRO GLY PHE GLY LYS ALA SEQRES 25 B 443 TYR THR ILE PHE ASN LYS THR LEU MET GLU ALA ASP ALA SEQRES 26 B 443 HIS TYR LYS SER VAL ARG THR TRP ASN GLU ILE ILE PRO SEQRES 27 B 443 SER LYS GLY CYS LEU LYS VAL GLY GLY ARG CYS HIS PRO SEQRES 28 B 443 HIS VAL ASN GLY VAL PHE PHE ASN GLY ILE ILE LEU GLY SEQRES 29 B 443 PRO ASP ASP HIS VAL LEU ILE PRO GLU MET GLN SER SER SEQRES 30 B 443 LEU LEU GLN GLN HIS MET GLU LEU LEU LYS SER SER VAL SEQRES 31 B 443 ILE PRO LEU MET HIS PRO LEU ALA ASP PRO SER THR VAL SEQRES 32 B 443 PHE LYS GLU GLY ASP GLU ALA GLU ASP PHE VAL GLU VAL SEQRES 33 B 443 HIS LEU PRO ASP VAL TYR LYS GLN ILE SER GLY VAL ASP SEQRES 34 B 443 LEU GLY LEU PRO ASN TRP GLY LYS HIS HIS HIS HIS HIS SEQRES 35 B 443 HIS HELIX 1 AA1 ASP A 18 LEU A 22 5 5 HELIX 2 AA2 THR A 90 ALA A 103 1 14 HELIX 3 AA3 VAL A 273 LYS A 294 1 22 HELIX 4 AA4 SER A 297 HIS A 303 1 7 HELIX 5 AA5 THR A 334 ILE A 338 5 5 HELIX 6 AA6 ILE A 373 LYS A 389 1 17 HELIX 7 AA7 HIS A 397 ASP A 401 5 5 HELIX 8 AA8 ASP B 18 LEU B 22 5 5 HELIX 9 AA9 THR B 90 TRP B 100 1 11 HELIX 10 AB1 LYS B 279 LYS B 294 1 16 HELIX 11 AB2 ARG B 299 HIS B 303 5 5 HELIX 12 AB3 THR B 334 ILE B 338 5 5 HELIX 13 AB4 ILE B 373 LYS B 389 1 17 SHEET 1 AA1 3 TYR A 5 LEU A 11 0 SHEET 2 AA1 3 THR A 321 VAL A 332 -1 O LYS A 330 N ILE A 7 SHEET 3 AA1 3 SER A 15 PRO A 16 -1 N SER A 15 O GLU A 324 SHEET 1 AA2 3 TYR A 5 LEU A 11 0 SHEET 2 AA2 3 THR A 321 VAL A 332 -1 O LYS A 330 N ILE A 7 SHEET 3 AA2 3 GLY A 310 PHE A 318 -1 N THR A 316 O MET A 323 SHEET 1 AA3 4 LEU A 38 LEU A 46 0 SHEET 2 AA3 4 PHE A 192 ALA A 200 -1 O GLY A 197 N PHE A 41 SHEET 3 AA3 4 GLY A 208 VAL A 210 -1 O GLY A 208 N ALA A 200 SHEET 4 AA3 4 TYR A 216 SER A 218 -1 O LYS A 217 N PHE A 209 SHEET 1 AA4 3 LYS A 85 PHE A 87 0 SHEET 2 AA4 3 GLY A 58 ALA A 68 -1 N VAL A 65 O LYS A 85 SHEET 3 AA4 3 THR A 127 ILE A 135 -1 O LYS A 129 N THR A 66 SHEET 1 AA5 4 LYS A 85 PHE A 87 0 SHEET 2 AA5 4 GLY A 58 ALA A 68 -1 N VAL A 65 O LYS A 85 SHEET 3 AA5 4 THR A 176 PRO A 180 -1 O ILE A 177 N CYS A 61 SHEET 4 AA5 4 CYS A 169 SER A 170 -1 N CYS A 169 O TRP A 178 SHEET 1 AA6 2 ASP A 141 ASP A 143 0 SHEET 2 AA6 2 SER A 148 HIS A 150 -1 O HIS A 150 N ASP A 141 SHEET 1 AA7 3 CYS A 223 LEU A 227 0 SHEET 2 AA7 3 VAL A 230 ARG A 234 -1 O ARG A 234 N CYS A 223 SHEET 3 AA7 3 TRP A 240 VAL A 241 -1 O VAL A 241 N LEU A 233 SHEET 1 AA8 2 LYS A 346 VAL A 347 0 SHEET 2 AA8 2 ARG A 350 CYS A 351 -1 O ARG A 350 N VAL A 347 SHEET 1 AA9 3 VAL A 358 PHE A 360 0 SHEET 2 AA9 3 ILE A 363 LEU A 365 -1 O ILE A 363 N PHE A 360 SHEET 3 AA9 3 VAL A 371 LEU A 372 -1 O LEU A 372 N ILE A 364 SHEET 1 AB1 3 THR B 6 LEU B 11 0 SHEET 2 AB1 3 THR B 321 SER B 331 -1 O HIS B 328 N ASP B 9 SHEET 3 AB1 3 SER B 15 PRO B 16 -1 N SER B 15 O GLU B 324 SHEET 1 AB2 3 THR B 6 LEU B 11 0 SHEET 2 AB2 3 THR B 321 SER B 331 -1 O HIS B 328 N ASP B 9 SHEET 3 AB2 3 GLY B 310 PHE B 318 -1 N GLY B 312 O ALA B 327 SHEET 1 AB3 2 GLU B 40 LEU B 46 0 SHEET 2 AB3 2 PHE B 192 LYS B 198 -1 O GLY B 197 N PHE B 41 SHEET 1 AB4 3 ILE B 54 VAL B 56 0 SHEET 2 AB4 3 THR B 140 LEU B 142 -1 O LEU B 142 N ILE B 54 SHEET 3 AB4 3 LEU B 149 HIS B 150 -1 O HIS B 150 N ASP B 141 SHEET 1 AB5 3 LYS B 85 HIS B 86 0 SHEET 2 AB5 3 GLY B 58 VAL B 65 -1 N VAL B 65 O LYS B 85 SHEET 3 AB5 3 SER B 131 ILE B 135 -1 O ILE B 133 N THR B 62 SHEET 1 AB6 3 LYS B 85 HIS B 86 0 SHEET 2 AB6 3 GLY B 58 VAL B 65 -1 N VAL B 65 O LYS B 85 SHEET 3 AB6 3 THR B 176 PRO B 180 -1 O ILE B 177 N CYS B 61 SHEET 1 AB7 2 GLY B 208 VAL B 210 0 SHEET 2 AB7 2 TYR B 216 SER B 218 -1 O LYS B 217 N PHE B 209 SHEET 1 AB8 3 CYS B 223 LEU B 227 0 SHEET 2 AB8 3 VAL B 230 ARG B 234 -1 O ARG B 234 N CYS B 223 SHEET 3 AB8 3 TRP B 240 VAL B 241 -1 O VAL B 241 N LEU B 233 SHEET 1 AB9 2 ILE B 364 LEU B 365 0 SHEET 2 AB9 2 VAL B 371 LEU B 372 -1 O LEU B 372 N ILE B 364 SSBOND 1 CYS A 24 CYS A 283 1555 1555 2.04 SSBOND 2 CYS A 35 CYS A 207 1555 1555 2.05 SSBOND 3 CYS A 61 CYS A 94 1555 1555 2.03 SSBOND 4 CYS A 159 CYS A 169 1555 1555 2.03 SSBOND 5 CYS A 189 CYS A 228 1555 1555 2.03 SSBOND 6 CYS A 223 CYS A 252 1555 1555 2.03 SSBOND 7 CYS A 344 CYS A 351 1555 1555 2.03 SSBOND 8 CYS B 24 CYS B 283 1555 1555 2.03 SSBOND 9 CYS B 35 CYS B 207 1555 1555 2.04 SSBOND 10 CYS B 61 CYS B 94 1555 1555 2.03 SSBOND 11 CYS B 189 CYS B 228 1555 1555 2.03 SSBOND 12 CYS B 223 CYS B 252 1555 1555 2.03 SSBOND 13 CYS B 344 CYS B 351 1555 1555 2.03 CISPEP 1 SER A 136 PRO A 137 0 -2.47 CISPEP 2 SER B 136 PRO B 137 0 -5.48 CRYST1 192.440 138.447 61.442 90.00 100.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005196 0.000000 0.000918 0.00000 SCALE2 0.000000 0.007223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016528 0.00000