HEADER HYDROLASE 13-DEC-19 6LIZ TITLE CRYSTAL STRUCTURE OF NDM-1 IN COMPLEX WITH D-CAPTOPRIL DERIVATIVE TITLE 2 WSS02120 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE TYPE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B2 METALLO-BETA-LACTAMASE,BETA-LACTAMASE TYPE II,METALLO- COMPND 5 BETA-LACTAMASE NDM-1,METALLO-BETA-LACTAMASE TYPE II,NEW DELHI COMPND 6 METALLO-BETA-LACTAMASE-1,NDM-1; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRHISMBP KEYWDS NDM-1, METALLO-BETA-LACTAMASE, ANTIBIOTIC RESISTENT, INHIBITOR, THIO KEYWDS 2 COMPOUNDS, ANTIBIOTIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,G.MA REVDAT 3 22-NOV-23 6LIZ 1 REMARK REVDAT 2 23-DEC-20 6LIZ 1 JRNL REVDAT 1 16-DEC-20 6LIZ 0 JRNL AUTH G.MA,S.WANG,K.WU,W.ZHANG,A.AHMAD,Q.HAO,X.LEI,H.ZHANG JRNL TITL STRUCTURE-GUIDED OPTIMIZATION OF D-CAPTOPRIL FOR DISCOVERY JRNL TITL 2 OF POTENT NDM-1 INHIBITORS. JRNL REF BIOORG.MED.CHEM. V. 29 15902 2020 JRNL REFN ESSN 1464-3391 JRNL PMID 33302045 JRNL DOI 10.1016/J.BMC.2020.115902 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 84612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 3.2600 0.98 3055 167 0.1450 0.1589 REMARK 3 2 3.2600 - 2.5876 0.99 3065 144 0.1634 0.1704 REMARK 3 3 2.5876 - 2.2606 1.00 3066 153 0.1686 0.2006 REMARK 3 4 2.2606 - 2.0539 0.96 2929 159 0.1697 0.1671 REMARK 3 5 2.0539 - 1.9067 0.99 2984 171 0.1717 0.1814 REMARK 3 6 1.9067 - 1.7943 0.99 3039 167 0.1729 0.2061 REMARK 3 7 1.7943 - 1.7044 0.99 2994 170 0.1729 0.2397 REMARK 3 8 1.7044 - 1.6302 0.99 2998 145 0.1804 0.1858 REMARK 3 9 1.6302 - 1.5675 0.95 2891 161 0.1747 0.2008 REMARK 3 10 1.5675 - 1.5134 0.97 2978 145 0.1858 0.2092 REMARK 3 11 1.5134 - 1.4660 0.98 2975 154 0.1892 0.1908 REMARK 3 12 1.4660 - 1.4241 0.98 2978 154 0.1921 0.1945 REMARK 3 13 1.4241 - 1.3866 0.97 2938 147 0.1932 0.2084 REMARK 3 14 1.3866 - 1.3528 0.97 2916 156 0.1972 0.1769 REMARK 3 15 1.3528 - 1.3221 0.97 2974 158 0.2009 0.2320 REMARK 3 16 1.3221 - 1.2939 0.94 2869 157 0.2056 0.2295 REMARK 3 17 1.2939 - 1.2680 0.96 2841 176 0.2108 0.2248 REMARK 3 18 1.2680 - 1.2441 0.96 2925 155 0.2112 0.2286 REMARK 3 19 1.2441 - 1.2219 0.96 2887 166 0.2153 0.2280 REMARK 3 20 1.2219 - 1.2012 0.96 2913 162 0.2286 0.2277 REMARK 3 21 1.2012 - 1.1818 0.95 2881 136 0.2249 0.2285 REMARK 3 22 1.1818 - 1.1636 0.94 2856 155 0.2267 0.2515 REMARK 3 23 1.1636 - 1.1465 0.92 2788 156 0.2314 0.2244 REMARK 3 24 1.1465 - 1.1303 0.87 2646 122 0.2435 0.2522 REMARK 3 25 1.1303 - 1.1151 0.82 2472 144 0.2385 0.2907 REMARK 3 26 1.1151 - 1.1006 0.74 2238 121 0.2530 0.2674 REMARK 3 27 1.1006 - 1.0868 0.64 1937 100 0.2522 0.2898 REMARK 3 28 1.0868 - 1.0737 0.52 1584 78 0.2622 0.2919 REMARK 3 29 1.0737 - 1.0612 0.38 1137 61 0.2715 0.3062 REMARK 3 30 1.0612 - 1.0500 0.19 591 27 0.2917 0.2347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 42:46) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3384 -8.2484 5.9486 REMARK 3 T TENSOR REMARK 3 T11: 0.2986 T22: 0.2506 REMARK 3 T33: 0.1657 T12: -0.0084 REMARK 3 T13: 0.0129 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 8.2780 L22: 6.9887 REMARK 3 L33: 5.8002 L12: -4.0369 REMARK 3 L13: 0.0192 L23: 2.2091 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: -0.0270 S13: -0.4915 REMARK 3 S21: 0.5788 S22: -0.1474 S23: 0.4279 REMARK 3 S31: 0.1132 S32: -0.3205 S33: 0.0244 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 47:64) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4736 -12.2721 -0.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.1707 REMARK 3 T33: 0.1439 T12: -0.0170 REMARK 3 T13: 0.0404 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 2.5694 L22: 6.0209 REMARK 3 L33: 1.7759 L12: 2.2059 REMARK 3 L13: -0.4818 L23: -0.6548 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: -0.3326 S13: -0.0188 REMARK 3 S21: 0.4950 S22: -0.2140 S23: 0.1601 REMARK 3 S31: 0.0508 S32: 0.0736 S33: 0.0587 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 65:70) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8904 5.5143 -11.3207 REMARK 3 T TENSOR REMARK 3 T11: 0.5789 T22: 0.3281 REMARK 3 T33: 0.3765 T12: -0.0546 REMARK 3 T13: 0.0203 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 5.8014 L22: 3.2145 REMARK 3 L33: 3.8941 L12: -3.4554 REMARK 3 L13: -0.2920 L23: -1.9450 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.3764 S13: 0.5147 REMARK 3 S21: -0.2835 S22: -0.1051 S23: 0.0692 REMARK 3 S31: -0.2484 S32: -0.1783 S33: 0.1006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 71:197) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2456 -16.3791 -13.8446 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1279 REMARK 3 T33: 0.1273 T12: 0.0082 REMARK 3 T13: 0.0092 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6960 L22: 1.9370 REMARK 3 L33: 2.1460 L12: 0.1484 REMARK 3 L13: -0.2998 L23: 0.5626 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0107 S13: 0.0052 REMARK 3 S21: -0.0818 S22: -0.0550 S23: -0.0023 REMARK 3 S31: -0.0145 S32: 0.0238 S33: 0.0590 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 198:208) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7950 -19.4804 -8.9964 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.2262 REMARK 3 T33: 0.2279 T12: -0.0335 REMARK 3 T13: 0.0698 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 3.9832 L22: 3.2197 REMARK 3 L33: 5.8738 L12: 1.8969 REMARK 3 L13: -1.0932 L23: -4.1012 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.2139 S13: -0.2192 REMARK 3 S21: 0.0890 S22: -0.1839 S23: 0.4732 REMARK 3 S31: 0.2116 S32: -0.4237 S33: 0.2096 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 209:221) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2275 -2.7183 -14.4284 REMARK 3 T TENSOR REMARK 3 T11: 0.2893 T22: 0.3753 REMARK 3 T33: 0.6017 T12: 0.2156 REMARK 3 T13: -0.1106 T23: -0.1696 REMARK 3 L TENSOR REMARK 3 L11: 1.6892 L22: 3.6374 REMARK 3 L33: 2.7447 L12: -1.8409 REMARK 3 L13: -1.1881 L23: 0.2115 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.2375 S13: 0.6779 REMARK 3 S21: 0.1038 S22: 0.0889 S23: 0.0753 REMARK 3 S31: -0.6359 S32: -0.4772 S33: -0.2538 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 222:241) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3795 -12.0628 -22.6971 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.3950 REMARK 3 T33: 0.4114 T12: 0.0359 REMARK 3 T13: -0.1492 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.9481 L22: 0.7854 REMARK 3 L33: 0.7971 L12: 0.3368 REMARK 3 L13: -0.1605 L23: 0.6521 REMARK 3 S TENSOR REMARK 3 S11: -0.2135 S12: 0.4706 S13: 0.3798 REMARK 3 S21: -0.3555 S22: -0.1721 S23: 0.4841 REMARK 3 S31: -0.3616 S32: -0.4265 S33: -0.1988 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 242:268) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8118 -9.9511 -12.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.4077 REMARK 3 T33: 0.4503 T12: 0.0837 REMARK 3 T13: -0.0209 T23: -0.1314 REMARK 3 L TENSOR REMARK 3 L11: 1.9625 L22: 0.5903 REMARK 3 L33: 1.1142 L12: 0.7650 REMARK 3 L13: 0.1499 L23: 0.6284 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.2298 S13: 0.2174 REMARK 3 S21: -0.2082 S22: -0.2720 S23: 0.6655 REMARK 3 S31: -0.2159 S32: -0.7219 S33: -0.2231 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH5.5, 15% PEG 3350, REMARK 280 20MM L-PROLINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.97650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 LEU A 269 REMARK 465 ARG A 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 635 O HOH A 643 2.15 REMARK 500 OD1 ASN A 103 O HOH A 401 2.18 REMARK 500 O HOH A 578 O HOH A 598 2.18 REMARK 500 O HOH A 408 O HOH A 611 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 142.27 75.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 681 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 102.1 REMARK 620 3 HIS A 189 NE2 99.9 114.5 REMARK 620 4 EEO A 303 S1 133.7 109.2 97.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 110.4 REMARK 620 3 HIS A 250 NE2 91.1 105.8 REMARK 620 4 EEO A 303 S1 116.0 113.5 117.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EEO A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LIP RELATED DB: PDB REMARK 900 ANALOGUE REMARK 900 RELATED ID: 5ZJ2 RELATED DB: PDB REMARK 900 ANALOGUE DBREF 6LIZ A 29 270 UNP C7C422 BLAN1_KLEPN 29 270 SEQRES 1 A 242 GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET GLU THR SEQRES 2 A 242 GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN LEU SEQRES 3 A 242 ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP MET SEQRES 4 A 242 PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE VAL SEQRES 5 A 242 ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA TRP SEQRES 6 A 242 THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE LYS SEQRES 7 A 242 GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL THR SEQRES 8 A 242 HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA LEU SEQRES 9 A 242 HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SER SEQRES 10 A 242 ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA GLN SEQRES 11 A 242 HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU PRO SEQRES 12 A 242 ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE TYR SEQRES 13 A 242 PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL GLY SEQRES 14 A 242 ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU ILE SEQRES 15 A 242 LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY ASP SEQRES 16 A 242 ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA PHE SEQRES 17 A 242 GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SER SEQRES 18 A 242 HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS THR SEQRES 19 A 242 ALA ARG MET ALA ASP LYS LEU ARG HET ZN A 301 1 HET ZN A 302 1 HET EEO A 303 16 HETNAM ZN ZINC ION HETNAM EEO (2R)-1-[(2S)-2-METHYL-3-SULFANYL-PROPANOYL]AZEPANE-2- HETNAM 2 EEO CARBOXYLIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 EEO C11 H19 N O3 S FORMUL 5 HOH *281(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 GLY A 153 1 11 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 CYS A 208 ILE A 210 5 3 HELIX 7 AA7 HIS A 228 PHE A 240 1 13 HELIX 8 AA8 ARG A 256 LYS A 268 1 13 SHEET 1 AA1 8 GLN A 44 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O LEU A 49 N PHE A 46 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O GLY A 71 N MET A 67 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O ARG A 85 N ASP A 82 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O VAL A 117 N VAL A 88 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 LINK NE2 HIS A 120 ZN ZN A 301 1555 1555 2.03 LINK ND1 HIS A 122 ZN ZN A 301 1555 1555 2.01 LINK OD2 ASP A 124 ZN ZN A 302 1555 1555 1.91 LINK NE2 HIS A 189 ZN ZN A 301 1555 1555 2.04 LINK SG CYS A 208 ZN ZN A 302 1555 1555 2.29 LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 2.05 LINK ZN ZN A 301 S1 EEO A 303 1555 1555 2.33 LINK ZN ZN A 302 S1 EEO A 303 1555 1555 2.32 SITE 1 AC1 4 HIS A 120 HIS A 122 HIS A 189 EEO A 303 SITE 1 AC2 4 ASP A 124 CYS A 208 HIS A 250 EEO A 303 SITE 1 AC3 12 MET A 67 VAL A 73 TRP A 93 HIS A 122 SITE 2 AC3 12 ASP A 124 HIS A 189 GLY A 219 ASN A 220 SITE 3 AC3 12 HIS A 250 ZN A 301 ZN A 302 HOH A 537 CRYST1 41.741 59.953 42.264 90.00 98.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023957 0.000000 0.003585 0.00000 SCALE2 0.000000 0.016680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023924 0.00000