HEADER VIRAL PROTEIN 13-DEC-19 6LJ3 TITLE FULL LENGTH ASFV DUTPASE IN COMPLEX WITH ALPHA,BETA-IMINODUTP AND TITLE 2 MAGNESIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: E165R; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: E165R CDS PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: ASFV; SOURCE 4 ORGANISM_TAXID: 10497; SOURCE 5 GENE: E165R CDS, E165R, ASFV-GEORGIA_4-154, SOURCE 6 ASFV_KYIV_2016_131_00207; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ASFV, DUTPASE, ADUT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.LIANG,G.Q.PENG REVDAT 4 22-NOV-23 6LJ3 1 REMARK REVDAT 3 21-JUL-21 6LJ3 1 JRNL REVDAT 2 25-NOV-20 6LJ3 1 JRNL REVDAT 1 11-NOV-20 6LJ3 0 JRNL AUTH R.LIANG,G.WANG,D.ZHANG,G.YE,M.LI,Y.SHI,J.SHI,H.CHEN,G.PENG JRNL TITL STRUCTURAL COMPARISONS OF HOST AND AFRICAN SWINE FEVER VIRUS JRNL TITL 2 DUTPASES REVEAL NEW CLUES FOR INHIBITOR DEVELOPMENT. JRNL REF J.BIOL.CHEM. V. 296 00015 2020 JRNL REFN ESSN 1083-351X JRNL PMID 33139328 JRNL DOI 10.1074/JBC.RA120.014005 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.7 REMARK 3 NUMBER OF REFLECTIONS : 28145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 17.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3495 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3653 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3480 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4966 ; 1.604 ; 1.671 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8091 ; 1.240 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 7.447 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;34.938 ;22.866 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 638 ;14.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.239 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3936 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 690 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6LJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1300014880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34696 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 59.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE, 0.1 M, 24% (W/V) REMARK 280 PEG 3350, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.98450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.21350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.98450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.21350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 THR B 147 REMARK 465 PRO B 148 REMARK 465 ARG B 149 REMARK 465 GLY B 150 REMARK 465 GLU B 151 REMARK 465 GLY B 152 REMARK 465 ARG B 153 REMARK 465 PHE B 154 REMARK 465 GLY B 155 REMARK 465 SER B 156 REMARK 465 THR B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 ALA B 160 REMARK 465 GLY B 161 REMARK 465 ILE B 162 REMARK 465 MET B 163 REMARK 465 ARG B 164 REMARK 465 THR B 165 REMARK 465 MET C 1 REMARK 465 PRO C 142 REMARK 465 LEU C 143 REMARK 465 PHE C 144 REMARK 465 ALA C 145 REMARK 465 PRO C 146 REMARK 465 THR C 147 REMARK 465 PRO C 148 REMARK 465 ARG C 149 REMARK 465 GLY C 150 REMARK 465 GLU C 151 REMARK 465 GLY C 152 REMARK 465 ARG C 153 REMARK 465 PHE C 154 REMARK 465 GLY C 155 REMARK 465 SER C 156 REMARK 465 THR C 157 REMARK 465 GLY C 158 REMARK 465 GLU C 159 REMARK 465 ALA C 160 REMARK 465 GLY C 161 REMARK 465 ILE C 162 REMARK 465 MET C 163 REMARK 465 ARG C 164 REMARK 465 THR C 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 25 61.49 -118.78 REMARK 500 CYS A 37 -33.80 74.90 REMARK 500 VAL A 95 24.08 -140.58 REMARK 500 GLN A 124 126.06 -38.61 REMARK 500 GLN A 139 155.10 -49.65 REMARK 500 ILE A 162 -52.19 58.74 REMARK 500 ARG A 164 -92.62 86.63 REMARK 500 ASN B 25 69.38 -117.85 REMARK 500 CYS B 37 -22.69 72.74 REMARK 500 SER C 21 170.72 176.13 REMARK 500 ASN C 25 76.37 -106.97 REMARK 500 CYS C 37 -19.88 74.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 420 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH C 407 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH C 408 DISTANCE = 7.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUP A 201 O1A REMARK 620 2 DUP A 201 O1B 89.7 REMARK 620 3 DUP A 201 O2G 97.2 93.4 REMARK 620 4 HOH A 347 O 168.1 91.3 94.5 REMARK 620 5 HOH A 377 O 86.5 172.2 93.8 91.0 REMARK 620 6 HOH C 309 O 89.1 90.3 172.7 79.1 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUP A 202 O2A REMARK 620 2 DUP A 202 O1B 79.7 REMARK 620 3 DUP A 202 O2G 90.5 76.6 REMARK 620 4 HOH A 307 O 96.7 103.3 172.7 REMARK 620 5 HOH A 327 O 176.1 96.5 89.5 83.3 REMARK 620 6 HOH B 400 O 93.8 166.8 92.1 88.7 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUP B 202 O1A REMARK 620 2 DUP B 202 O1B 78.0 REMARK 620 3 DUP B 202 O3G 92.9 83.9 REMARK 620 4 HOH B 318 O 84.1 89.9 173.6 REMARK 620 5 HOH B 333 O 169.3 97.9 96.5 86.0 REMARK 620 6 HOH B 394 O 89.8 163.8 86.1 99.5 96.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 DBREF1 6LJ3 A 1 165 UNP A0A2X0SE53_ASF DBREF2 6LJ3 A A0A2X0SE53 1 165 DBREF1 6LJ3 B 1 165 UNP A0A2X0SE53_ASF DBREF2 6LJ3 B A0A2X0SE53 1 165 DBREF1 6LJ3 C 1 165 UNP A0A2X0SE53_ASF DBREF2 6LJ3 C A0A2X0SE53 1 165 SEQRES 1 A 165 MET ALA THR ASN PHE PHE ILE GLN PRO ILE THR GLU GLU SEQRES 2 A 165 ALA GLU ALA TYR TYR PRO PRO SER VAL ILE THR ASN LYS SEQRES 3 A 165 ARG LYS ASP LEU GLY VAL ASP VAL TYR CYS CYS SER ASP SEQRES 4 A 165 LEU VAL LEU GLN PRO GLY LEU ASN ILE VAL ARG LEU HIS SEQRES 5 A 165 ILE LYS VAL ALA CYS GLU HIS MET GLY LYS LYS CYS GLY SEQRES 6 A 165 PHE LYS ILE MET ALA ARG SER SER MET CYS THR HIS GLU SEQRES 7 A 165 ARG LEU LEU ILE LEU ALA ASN GLY ILE GLY LEU ILE ASP SEQRES 8 A 165 PRO GLY TYR VAL GLY GLU LEU MET LEU LYS ILE ILE ASN SEQRES 9 A 165 LEU GLY ASP THR PRO VAL GLN ILE TRP ALA LYS GLU CYS SEQRES 10 A 165 LEU VAL GLN LEU VAL ALA GLN GLY ASP HIS VAL PRO ASP SEQRES 11 A 165 HIS ILE ASN ILE LEU LYS ARG ASN GLN ILE PHE PRO LEU SEQRES 12 A 165 PHE ALA PRO THR PRO ARG GLY GLU GLY ARG PHE GLY SER SEQRES 13 A 165 THR GLY GLU ALA GLY ILE MET ARG THR SEQRES 1 B 165 MET ALA THR ASN PHE PHE ILE GLN PRO ILE THR GLU GLU SEQRES 2 B 165 ALA GLU ALA TYR TYR PRO PRO SER VAL ILE THR ASN LYS SEQRES 3 B 165 ARG LYS ASP LEU GLY VAL ASP VAL TYR CYS CYS SER ASP SEQRES 4 B 165 LEU VAL LEU GLN PRO GLY LEU ASN ILE VAL ARG LEU HIS SEQRES 5 B 165 ILE LYS VAL ALA CYS GLU HIS MET GLY LYS LYS CYS GLY SEQRES 6 B 165 PHE LYS ILE MET ALA ARG SER SER MET CYS THR HIS GLU SEQRES 7 B 165 ARG LEU LEU ILE LEU ALA ASN GLY ILE GLY LEU ILE ASP SEQRES 8 B 165 PRO GLY TYR VAL GLY GLU LEU MET LEU LYS ILE ILE ASN SEQRES 9 B 165 LEU GLY ASP THR PRO VAL GLN ILE TRP ALA LYS GLU CYS SEQRES 10 B 165 LEU VAL GLN LEU VAL ALA GLN GLY ASP HIS VAL PRO ASP SEQRES 11 B 165 HIS ILE ASN ILE LEU LYS ARG ASN GLN ILE PHE PRO LEU SEQRES 12 B 165 PHE ALA PRO THR PRO ARG GLY GLU GLY ARG PHE GLY SER SEQRES 13 B 165 THR GLY GLU ALA GLY ILE MET ARG THR SEQRES 1 C 165 MET ALA THR ASN PHE PHE ILE GLN PRO ILE THR GLU GLU SEQRES 2 C 165 ALA GLU ALA TYR TYR PRO PRO SER VAL ILE THR ASN LYS SEQRES 3 C 165 ARG LYS ASP LEU GLY VAL ASP VAL TYR CYS CYS SER ASP SEQRES 4 C 165 LEU VAL LEU GLN PRO GLY LEU ASN ILE VAL ARG LEU HIS SEQRES 5 C 165 ILE LYS VAL ALA CYS GLU HIS MET GLY LYS LYS CYS GLY SEQRES 6 C 165 PHE LYS ILE MET ALA ARG SER SER MET CYS THR HIS GLU SEQRES 7 C 165 ARG LEU LEU ILE LEU ALA ASN GLY ILE GLY LEU ILE ASP SEQRES 8 C 165 PRO GLY TYR VAL GLY GLU LEU MET LEU LYS ILE ILE ASN SEQRES 9 C 165 LEU GLY ASP THR PRO VAL GLN ILE TRP ALA LYS GLU CYS SEQRES 10 C 165 LEU VAL GLN LEU VAL ALA GLN GLY ASP HIS VAL PRO ASP SEQRES 11 C 165 HIS ILE ASN ILE LEU LYS ARG ASN GLN ILE PHE PRO LEU SEQRES 12 C 165 PHE ALA PRO THR PRO ARG GLY GLU GLY ARG PHE GLY SER SEQRES 13 C 165 THR GLY GLU ALA GLY ILE MET ARG THR HET DUP A 201 28 HET DUP A 202 28 HET MG A 203 1 HET MG B 201 1 HET DUP B 202 28 HET MG C 201 1 HETNAM DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 DUP 3(C9 H16 N3 O13 P3) FORMUL 6 MG 3(MG 2+) FORMUL 10 HOH *367(H2 O) HELIX 1 AA1 THR A 11 TYR A 18 1 8 HELIX 2 AA2 SER A 72 CYS A 75 5 4 HELIX 3 AA3 GLY A 125 HIS A 127 5 3 HELIX 4 AA4 PHE A 141 ALA A 145 5 5 HELIX 5 AA5 THR B 11 ALA B 16 1 6 HELIX 6 AA6 GLY B 125 HIS B 127 5 3 HELIX 7 AA7 PHE B 141 ALA B 145 5 5 HELIX 8 AA8 THR C 11 ALA C 16 1 6 HELIX 9 AA9 GLY C 125 HIS C 127 5 3 SHEET 1 AA1 5 SER A 21 THR A 24 0 SHEET 2 AA1 5 HIS A 131 ILE A 134 -1 O ILE A 132 N ILE A 23 SHEET 3 AA1 5 THR A 3 PRO A 9 1 N PHE A 5 O ASN A 133 SHEET 4 AA1 5 ILE A 53 HIS A 59 -1 O LYS A 54 N GLN A 8 SHEET 5 AA1 5 LYS A 62 CYS A 64 -1 O LYS A 62 N HIS A 59 SHEET 1 AA2 4 VAL A 32 VAL A 34 0 SHEET 2 AA2 4 VAL A 119 ALA A 123 -1 O LEU A 121 N VAL A 32 SHEET 3 AA2 4 PHE A 66 ALA A 70 -1 N LYS A 67 O VAL A 122 SHEET 4 AA2 4 GLY A 88 ILE A 90 -1 O GLY A 88 N ILE A 68 SHEET 1 AA3 2 LEU A 40 LEU A 42 0 SHEET 2 AA3 2 VAL A 110 ILE A 112 -1 O VAL A 110 N LEU A 42 SHEET 1 AA4 3 GLY A 45 ARG A 50 0 SHEET 2 AA4 3 MET A 99 ASN A 104 -1 O LEU A 100 N VAL A 49 SHEET 3 AA4 3 LEU A 81 LEU A 83 -1 N ILE A 82 O ILE A 103 SHEET 1 AA5 5 SER B 21 THR B 24 0 SHEET 2 AA5 5 HIS B 131 ILE B 134 -1 O ILE B 134 N SER B 21 SHEET 3 AA5 5 THR B 3 PRO B 9 1 N PHE B 5 O ASN B 133 SHEET 4 AA5 5 ILE B 53 HIS B 59 -1 O ALA B 56 N PHE B 6 SHEET 5 AA5 5 LYS B 62 CYS B 64 -1 O LYS B 62 N HIS B 59 SHEET 1 AA6 4 VAL B 32 TYR B 35 0 SHEET 2 AA6 4 CYS B 117 ALA B 123 -1 O LEU B 121 N VAL B 32 SHEET 3 AA6 4 PHE B 66 ALA B 70 -1 N MET B 69 O GLN B 120 SHEET 4 AA6 4 GLY B 88 ILE B 90 -1 O ILE B 90 N PHE B 66 SHEET 1 AA7 2 LEU B 40 LEU B 42 0 SHEET 2 AA7 2 VAL B 110 ILE B 112 -1 O VAL B 110 N LEU B 42 SHEET 1 AA8 3 GLY B 45 ARG B 50 0 SHEET 2 AA8 3 MET B 99 ASN B 104 -1 O LEU B 100 N VAL B 49 SHEET 3 AA8 3 LEU B 81 LEU B 83 -1 N ILE B 82 O ILE B 103 SHEET 1 AA9 5 SER C 21 THR C 24 0 SHEET 2 AA9 5 HIS C 131 ILE C 134 -1 O ILE C 132 N ILE C 23 SHEET 3 AA9 5 THR C 3 PRO C 9 1 N PHE C 5 O ASN C 133 SHEET 4 AA9 5 ILE C 53 HIS C 59 -1 O LYS C 54 N GLN C 8 SHEET 5 AA9 5 LYS C 62 CYS C 64 -1 O LYS C 62 N HIS C 59 SHEET 1 AB1 4 VAL C 32 TYR C 35 0 SHEET 2 AB1 4 CYS C 117 ALA C 123 -1 O LEU C 121 N VAL C 32 SHEET 3 AB1 4 PHE C 66 ALA C 70 -1 N LYS C 67 O VAL C 122 SHEET 4 AB1 4 GLY C 88 ILE C 90 -1 O ILE C 90 N PHE C 66 SHEET 1 AB2 2 LEU C 40 LEU C 42 0 SHEET 2 AB2 2 VAL C 110 ILE C 112 -1 O ILE C 112 N LEU C 40 SHEET 1 AB3 3 GLY C 45 ARG C 50 0 SHEET 2 AB3 3 MET C 99 ASN C 104 -1 O LEU C 100 N VAL C 49 SHEET 3 AB3 3 LEU C 81 LEU C 83 -1 N ILE C 82 O ILE C 103 LINK O1A DUP A 201 MG MG C 201 1555 1555 1.86 LINK O1B DUP A 201 MG MG C 201 1555 1555 2.02 LINK O2G DUP A 201 MG MG C 201 1555 1555 2.01 LINK O2A DUP A 202 MG MG A 203 1555 1555 2.06 LINK O1B DUP A 202 MG MG A 203 1555 1555 2.23 LINK O2G DUP A 202 MG MG A 203 1555 1555 2.25 LINK MG MG A 203 O HOH A 307 1555 1555 1.97 LINK MG MG A 203 O HOH A 327 1555 1555 2.38 LINK MG MG A 203 O HOH B 400 1555 1555 2.22 LINK O HOH A 347 MG MG C 201 1555 1555 1.77 LINK O HOH A 377 MG MG C 201 1555 1555 2.34 LINK MG MG B 201 O1A DUP B 202 1555 1555 2.10 LINK MG MG B 201 O1B DUP B 202 1555 1555 2.20 LINK MG MG B 201 O3G DUP B 202 1555 1555 2.30 LINK MG MG B 201 O HOH B 318 1555 1555 2.10 LINK MG MG B 201 O HOH B 333 1555 1555 2.07 LINK MG MG B 201 O HOH B 394 1555 1555 2.13 LINK MG MG C 201 O HOH C 309 1555 1555 2.37 SITE 1 AC1 25 ASN A 85 GLY A 88 LEU A 89 ILE A 90 SITE 2 AC1 25 ASP A 91 TYR A 94 MET A 99 ARG A 149 SITE 3 AC1 25 GLY A 152 ARG A 153 PHE A 154 GLY A 155 SITE 4 AC1 25 SER A 156 THR A 157 HOH A 314 HOH A 347 SITE 5 AC1 25 HOH A 351 HOH A 371 HOH A 377 ARG C 71 SITE 6 AC1 25 SER C 72 SER C 73 GLN C 120 MG C 201 SITE 7 AC1 25 HOH C 309 SITE 1 AC2 18 ARG A 71 SER A 72 SER A 73 GLN A 120 SITE 2 AC2 18 LYS A 136 MG A 203 HOH A 307 HOH A 340 SITE 3 AC2 18 HOH A 357 HOH A 397 ASN B 85 GLY B 88 SITE 4 AC2 18 LEU B 89 ILE B 90 ASP B 91 TYR B 94 SITE 5 AC2 18 MET B 99 HOH B 355 SITE 1 AC3 4 DUP A 202 HOH A 307 HOH A 327 HOH B 400 SITE 1 AC4 4 DUP B 202 HOH B 318 HOH B 333 HOH B 394 SITE 1 AC5 21 ARG B 71 SER B 72 SER B 73 GLN B 120 SITE 2 AC5 21 LYS B 136 MG B 201 HOH B 310 HOH B 318 SITE 3 AC5 21 HOH B 324 HOH B 334 HOH B 350 HOH B 360 SITE 4 AC5 21 HOH B 362 HOH B 394 ASN C 85 GLY C 88 SITE 5 AC5 21 LEU C 89 ILE C 90 ASP C 91 TYR C 94 SITE 6 AC5 21 MET C 99 SITE 1 AC6 4 DUP A 201 HOH A 347 HOH A 377 HOH C 309 CRYST1 68.040 68.427 117.969 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008477 0.00000