HEADER CELL ADHESION 08-JAN-20 6LP3 TITLE STRUCTURAL BASIS AND FUNCTIONAL ANALYSIS EPO1-BEM3P COMPLEX FOR BUD TITLE 2 GROWTH COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YMR124W; COMPND 3 CHAIN: A, B, D, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GTPASE-ACTIVATING PROTEIN BEM3; COMPND 7 CHAIN: C, F; COMPND 8 SYNONYM: BUD EMERGENCE PROTEIN 3; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: YMR124W, YM8564.06; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: BEM3, YPL115C, LPH12C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BUDDING YEAST; ORGANELLE INHERITANCE; ENDOPLASMIC RETICULUM KEYWDS 2 INHERITANCE; POLARISOME; EPO1P; BEM3P., CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,L.LI,Z.H.MING,L.J.WU,L.M.YAN REVDAT 1 28-APR-21 6LP3 0 JRNL AUTH J.WANG JRNL TITL STRUCTURAL BASIS AND FUNCTIONAL ANALYSIS EPO1-BEM3P COMPLEX JRNL TITL 2 FOR BUD GROWTH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.343 REMARK 3 R VALUE (WORKING SET) : 0.340 REMARK 3 FREE R VALUE : 0.398 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0000 - 6.0607 1.00 2643 132 0.3019 0.3719 REMARK 3 2 6.0607 - 4.8123 1.00 2496 141 0.3883 0.4492 REMARK 3 3 4.8123 - 4.2044 1.00 2468 151 0.3499 0.4107 REMARK 3 4 4.2044 - 3.8202 1.00 2445 134 0.3506 0.3829 REMARK 3 5 3.8202 - 3.5470 0.99 2435 116 0.3898 0.4143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 46.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13161 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.547 REMARK 200 RESOLUTION RANGE LOW (A) : 46.032 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : 0.43100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.96100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M MES, PH REMARK 280 6.5, 10% 1,4-DIOXANE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.28750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.70250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.70250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.14375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.70250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.70250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.43125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.70250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.70250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.14375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.70250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.70250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.43125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.28750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 746 REMARK 465 SER A 747 REMARK 465 PRO A 748 REMARK 465 SER A 749 REMARK 465 LYS A 750 REMARK 465 THR A 751 REMARK 465 LYS A 752 REMARK 465 SER A 753 REMARK 465 ALA A 754 REMARK 465 PRO A 755 REMARK 465 VAL A 756 REMARK 465 SER A 757 REMARK 465 TYR A 758 REMARK 465 ASP A 759 REMARK 465 LYS A 760 REMARK 465 ASP A 761 REMARK 465 GLY A 762 REMARK 465 MET A 763 REMARK 465 ASN A 764 REMARK 465 ALA A 765 REMARK 465 SER A 766 REMARK 465 GLU A 767 REMARK 465 GLU A 768 REMARK 465 ASP A 769 REMARK 465 PHE A 770 REMARK 465 SER A 771 REMARK 465 PHE A 772 REMARK 465 ASP A 773 REMARK 465 ASN A 774 REMARK 465 THR A 775 REMARK 465 LEU A 776 REMARK 465 ALA A 777 REMARK 465 LYS A 778 REMARK 465 PRO A 779 REMARK 465 TYR A 780 REMARK 465 GLU A 781 REMARK 465 PRO A 782 REMARK 465 LEU A 783 REMARK 465 TYR A 784 REMARK 465 ALA A 785 REMARK 465 ARG A 786 REMARK 465 ARG A 787 REMARK 465 GLY A 788 REMARK 465 ASP A 789 REMARK 465 ILE A 790 REMARK 465 THR A 791 REMARK 465 SER A 792 REMARK 465 ALA A 793 REMARK 465 GLY A 794 REMARK 465 SER A 795 REMARK 465 THR A 796 REMARK 465 SER A 797 REMARK 465 GLY A 798 REMARK 465 GLU A 799 REMARK 465 ASP A 800 REMARK 465 SER A 801 REMARK 465 SER A 802 REMARK 465 GLN A 803 REMARK 465 PRO A 804 REMARK 465 LYS A 805 REMARK 465 MET A 806 REMARK 465 THR A 853 REMARK 465 ASN A 854 REMARK 465 ASN A 855 REMARK 465 SER A 856 REMARK 465 ALA A 857 REMARK 465 PRO A 858 REMARK 465 SER A 859 REMARK 465 PHE A 860 REMARK 465 ASP A 861 REMARK 465 ASP A 862 REMARK 465 SER A 863 REMARK 465 SER A 864 REMARK 465 THR A 910 REMARK 465 LYS A 911 REMARK 465 PRO A 912 REMARK 465 GLY A 940 REMARK 465 ARG A 941 REMARK 465 LEU A 942 REMARK 465 GLN A 943 REMARK 465 GLY B 746 REMARK 465 SER B 747 REMARK 465 PRO B 748 REMARK 465 SER B 749 REMARK 465 LYS B 750 REMARK 465 THR B 751 REMARK 465 LYS B 752 REMARK 465 SER B 753 REMARK 465 ALA B 754 REMARK 465 PRO B 755 REMARK 465 VAL B 756 REMARK 465 SER B 757 REMARK 465 TYR B 758 REMARK 465 ASP B 759 REMARK 465 LYS B 760 REMARK 465 ASP B 761 REMARK 465 GLY B 762 REMARK 465 MET B 763 REMARK 465 ASN B 764 REMARK 465 ALA B 765 REMARK 465 SER B 766 REMARK 465 GLU B 767 REMARK 465 GLU B 768 REMARK 465 ASP B 769 REMARK 465 PHE B 770 REMARK 465 SER B 771 REMARK 465 PHE B 772 REMARK 465 ASP B 773 REMARK 465 ASN B 774 REMARK 465 THR B 775 REMARK 465 LEU B 776 REMARK 465 ALA B 777 REMARK 465 LYS B 778 REMARK 465 PRO B 779 REMARK 465 TYR B 780 REMARK 465 GLU B 781 REMARK 465 PRO B 782 REMARK 465 LEU B 783 REMARK 465 TYR B 784 REMARK 465 ALA B 785 REMARK 465 ARG B 786 REMARK 465 ARG B 787 REMARK 465 GLY B 788 REMARK 465 ASP B 789 REMARK 465 ILE B 790 REMARK 465 THR B 791 REMARK 465 SER B 792 REMARK 465 ALA B 793 REMARK 465 GLY B 794 REMARK 465 SER B 795 REMARK 465 THR B 796 REMARK 465 SER B 797 REMARK 465 GLY B 798 REMARK 465 GLU B 799 REMARK 465 ASP B 800 REMARK 465 SER B 801 REMARK 465 SER B 802 REMARK 465 GLU B 852 REMARK 465 THR B 853 REMARK 465 ASN B 854 REMARK 465 ASN B 855 REMARK 465 SER B 856 REMARK 465 ALA B 857 REMARK 465 PRO B 858 REMARK 465 SER B 859 REMARK 465 PHE B 860 REMARK 465 ASP B 861 REMARK 465 ASP B 862 REMARK 465 SER B 863 REMARK 465 SER B 864 REMARK 465 SER B 865 REMARK 465 VAL B 866 REMARK 465 SER B 867 REMARK 465 LYS B 939 REMARK 465 GLY B 940 REMARK 465 ARG B 941 REMARK 465 LEU B 942 REMARK 465 GLN B 943 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 ASN C 4 REMARK 465 LEU C 5 REMARK 465 THR C 6 REMARK 465 THR C 7 REMARK 465 THR C 8 REMARK 465 HIS C 9 REMARK 465 GLY C 10 REMARK 465 GLY C 11 REMARK 465 SER C 12 REMARK 465 THR C 13 REMARK 465 THR C 14 REMARK 465 LEU C 15 REMARK 465 GLU C 16 REMARK 465 LEU C 17 REMARK 465 LEU C 18 REMARK 465 ALA C 19 REMARK 465 GLN C 20 REMARK 465 TYR C 21 REMARK 465 ASN C 22 REMARK 465 ASP C 23 REMARK 465 HIS C 24 REMARK 465 ARG C 25 REMARK 465 SER C 26 REMARK 465 LYS C 27 REMARK 465 LYS C 28 REMARK 465 ASP C 29 REMARK 465 LYS C 30 REMARK 465 SER C 31 REMARK 465 ILE C 32 REMARK 465 GLU C 33 REMARK 465 HIS C 34 REMARK 465 ILE C 35 REMARK 465 GLU C 36 REMARK 465 LYS C 37 REMARK 465 GLY C 38 REMARK 465 THR C 39 REMARK 465 CYS C 40 REMARK 465 SER C 41 REMARK 465 GLY C 42 REMARK 465 LYS C 43 REMARK 465 GLU C 44 REMARK 465 ARG C 45 REMARK 465 ASN C 46 REMARK 465 PRO C 47 REMARK 465 SER C 48 REMARK 465 LEU C 92 REMARK 465 GLU C 93 REMARK 465 GLN C 94 REMARK 465 VAL C 95 REMARK 465 GLN C 96 REMARK 465 ASN C 97 REMARK 465 ASP C 98 REMARK 465 SER C 99 REMARK 465 GLY D 746 REMARK 465 SER D 747 REMARK 465 PRO D 748 REMARK 465 SER D 749 REMARK 465 LYS D 750 REMARK 465 THR D 751 REMARK 465 LYS D 752 REMARK 465 SER D 753 REMARK 465 ALA D 754 REMARK 465 PRO D 755 REMARK 465 VAL D 756 REMARK 465 SER D 757 REMARK 465 TYR D 758 REMARK 465 ASP D 759 REMARK 465 LYS D 760 REMARK 465 ASP D 761 REMARK 465 GLY D 762 REMARK 465 MET D 763 REMARK 465 ASN D 764 REMARK 465 ALA D 765 REMARK 465 SER D 766 REMARK 465 GLU D 767 REMARK 465 GLU D 768 REMARK 465 ASP D 769 REMARK 465 PHE D 770 REMARK 465 SER D 771 REMARK 465 PHE D 772 REMARK 465 ASP D 773 REMARK 465 ASN D 774 REMARK 465 THR D 775 REMARK 465 LEU D 776 REMARK 465 ALA D 777 REMARK 465 LYS D 778 REMARK 465 PRO D 779 REMARK 465 TYR D 780 REMARK 465 GLU D 781 REMARK 465 PRO D 782 REMARK 465 LEU D 783 REMARK 465 TYR D 784 REMARK 465 ALA D 785 REMARK 465 ARG D 786 REMARK 465 ARG D 787 REMARK 465 GLY D 788 REMARK 465 ASP D 789 REMARK 465 ILE D 790 REMARK 465 THR D 791 REMARK 465 SER D 792 REMARK 465 ALA D 793 REMARK 465 GLY D 794 REMARK 465 SER D 795 REMARK 465 THR D 796 REMARK 465 SER D 797 REMARK 465 GLY D 798 REMARK 465 GLU D 799 REMARK 465 ASP D 800 REMARK 465 SER D 801 REMARK 465 SER D 802 REMARK 465 GLN D 803 REMARK 465 PRO D 804 REMARK 465 LYS D 805 REMARK 465 MET D 806 REMARK 465 ILE D 807 REMARK 465 SER D 856 REMARK 465 ALA D 857 REMARK 465 PRO D 858 REMARK 465 SER D 859 REMARK 465 PHE D 860 REMARK 465 ASP D 861 REMARK 465 ASP D 862 REMARK 465 SER D 863 REMARK 465 SER D 864 REMARK 465 THR D 910 REMARK 465 LYS D 911 REMARK 465 PRO D 912 REMARK 465 GLY D 940 REMARK 465 ARG D 941 REMARK 465 LEU D 942 REMARK 465 GLN D 943 REMARK 465 GLY E 746 REMARK 465 SER E 747 REMARK 465 PRO E 748 REMARK 465 SER E 749 REMARK 465 LYS E 750 REMARK 465 THR E 751 REMARK 465 LYS E 752 REMARK 465 SER E 753 REMARK 465 ALA E 754 REMARK 465 PRO E 755 REMARK 465 VAL E 756 REMARK 465 SER E 757 REMARK 465 TYR E 758 REMARK 465 ASP E 759 REMARK 465 LYS E 760 REMARK 465 ASP E 761 REMARK 465 GLY E 762 REMARK 465 MET E 763 REMARK 465 ASN E 764 REMARK 465 ALA E 765 REMARK 465 SER E 766 REMARK 465 GLU E 767 REMARK 465 GLU E 768 REMARK 465 ASP E 769 REMARK 465 PHE E 770 REMARK 465 SER E 771 REMARK 465 PHE E 772 REMARK 465 ASP E 773 REMARK 465 ASN E 774 REMARK 465 THR E 775 REMARK 465 LEU E 776 REMARK 465 ALA E 777 REMARK 465 LYS E 778 REMARK 465 PRO E 779 REMARK 465 TYR E 780 REMARK 465 GLU E 781 REMARK 465 PRO E 782 REMARK 465 LEU E 783 REMARK 465 TYR E 784 REMARK 465 ALA E 785 REMARK 465 ARG E 786 REMARK 465 ARG E 787 REMARK 465 GLY E 788 REMARK 465 ASP E 789 REMARK 465 ILE E 790 REMARK 465 THR E 791 REMARK 465 SER E 792 REMARK 465 ALA E 793 REMARK 465 GLY E 794 REMARK 465 SER E 795 REMARK 465 THR E 796 REMARK 465 SER E 797 REMARK 465 GLY E 798 REMARK 465 GLU E 799 REMARK 465 ASP E 800 REMARK 465 SER E 801 REMARK 465 SER E 802 REMARK 465 THR E 853 REMARK 465 ASN E 854 REMARK 465 ASN E 855 REMARK 465 SER E 856 REMARK 465 ALA E 857 REMARK 465 PRO E 858 REMARK 465 SER E 859 REMARK 465 PHE E 860 REMARK 465 ASP E 861 REMARK 465 ASP E 862 REMARK 465 SER E 863 REMARK 465 SER E 864 REMARK 465 SER E 865 REMARK 465 VAL E 866 REMARK 465 SER E 867 REMARK 465 GLY E 940 REMARK 465 ARG E 941 REMARK 465 LEU E 942 REMARK 465 GLN E 943 REMARK 465 MET F 1 REMARK 465 THR F 2 REMARK 465 ASP F 3 REMARK 465 ASN F 4 REMARK 465 LEU F 5 REMARK 465 THR F 6 REMARK 465 THR F 7 REMARK 465 THR F 8 REMARK 465 HIS F 9 REMARK 465 GLY F 10 REMARK 465 GLY F 11 REMARK 465 SER F 12 REMARK 465 THR F 13 REMARK 465 THR F 14 REMARK 465 LEU F 15 REMARK 465 GLU F 16 REMARK 465 LEU F 17 REMARK 465 LEU F 18 REMARK 465 ALA F 19 REMARK 465 GLN F 20 REMARK 465 TYR F 21 REMARK 465 ASN F 22 REMARK 465 ASP F 23 REMARK 465 HIS F 24 REMARK 465 ARG F 25 REMARK 465 SER F 26 REMARK 465 LYS F 27 REMARK 465 LYS F 28 REMARK 465 ASP F 29 REMARK 465 LYS F 30 REMARK 465 SER F 31 REMARK 465 ILE F 32 REMARK 465 GLU F 33 REMARK 465 HIS F 34 REMARK 465 ILE F 35 REMARK 465 GLU F 36 REMARK 465 LYS F 37 REMARK 465 GLY F 38 REMARK 465 THR F 39 REMARK 465 CYS F 40 REMARK 465 SER F 41 REMARK 465 GLY F 42 REMARK 465 LYS F 43 REMARK 465 GLU F 44 REMARK 465 ARG F 45 REMARK 465 ASN F 46 REMARK 465 PRO F 47 REMARK 465 SER F 48 REMARK 465 LEU F 92 REMARK 465 GLU F 93 REMARK 465 GLN F 94 REMARK 465 VAL F 95 REMARK 465 GLN F 96 REMARK 465 ASN F 97 REMARK 465 ASP F 98 REMARK 465 SER F 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 805 CG CD CE NZ REMARK 470 LYS E 805 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 816 N THR A 818 1.61 REMARK 500 O TYR D 851 ND2 ASN D 855 1.68 REMARK 500 CG2 VAL D 866 CE2 PHE E 868 1.73 REMARK 500 CD2 LEU D 850 ND2 ASN D 854 1.81 REMARK 500 ND2 ASN D 820 OD1 ASN E 820 1.83 REMARK 500 NH1 ARG D 931 OD1 ASP E 932 1.84 REMARK 500 OD1 ASN D 820 ND2 ASN E 820 2.00 REMARK 500 O SER A 810 CG GLN A 813 2.05 REMARK 500 O SER A 865 N PHE B 868 2.11 REMARK 500 O LEU B 814 OG1 THR B 818 2.12 REMARK 500 NH1 ARG D 876 OE1 GLU F 65 2.17 REMARK 500 O ILE B 848 N TYR B 851 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 833 OD1 ASN D 854 5445 1.63 REMARK 500 OE2 GLU B 833 OD1 ASN D 854 5445 2.01 REMARK 500 CD GLU B 833 OD1 ASN D 854 5445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 812 -80.11 -68.37 REMARK 500 GLN A 813 135.91 51.66 REMARK 500 LEU A 814 -88.00 50.03 REMARK 500 LEU A 816 -64.31 -133.16 REMARK 500 ILE A 817 78.14 -36.02 REMARK 500 GLU A 819 87.29 59.76 REMARK 500 GLU A 836 25.92 -76.50 REMARK 500 TYR A 851 -62.37 -97.93 REMARK 500 SER A 879 6.58 -65.20 REMARK 500 GLN A 906 -131.09 -76.44 REMARK 500 LYS B 805 -17.37 -145.67 REMARK 500 MET B 806 -141.61 48.63 REMARK 500 ILE B 807 146.73 69.78 REMARK 500 THR B 808 -43.49 -136.62 REMARK 500 ILE B 809 -89.42 -122.85 REMARK 500 SER B 810 -10.10 56.30 REMARK 500 ASN B 908 12.43 -65.23 REMARK 500 THR B 910 108.84 68.77 REMARK 500 LYS B 911 176.46 54.85 REMARK 500 PRO B 912 102.60 13.90 REMARK 500 MET B 915 -72.59 -54.90 REMARK 500 ASN C 56 1.93 -67.79 REMARK 500 ILE C 57 -60.14 -105.52 REMARK 500 ILE D 809 -80.44 -94.99 REMARK 500 SER D 810 -5.38 -51.47 REMARK 500 GLN D 813 -92.62 54.67 REMARK 500 ASN D 815 -94.17 48.45 REMARK 500 LEU D 816 -63.31 -162.57 REMARK 500 ILE D 817 64.74 -65.99 REMARK 500 GLU D 819 86.27 52.98 REMARK 500 THR D 853 -41.36 -148.73 REMARK 500 GLN D 906 -119.46 -69.89 REMARK 500 MET D 915 -71.53 -80.46 REMARK 500 LYS E 805 -53.00 -128.91 REMARK 500 MET E 806 -120.11 58.48 REMARK 500 ILE E 807 71.68 42.12 REMARK 500 ILE E 809 -81.65 -110.84 REMARK 500 LEU E 816 -74.78 -58.92 REMARK 500 SER E 869 95.23 -62.36 REMARK 500 THR E 910 83.63 51.05 REMARK 500 LYS E 911 -172.29 52.28 REMARK 500 PRO E 912 76.08 9.78 REMARK 500 SER E 913 85.91 32.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 911 PRO B 912 -142.06 REMARK 500 LYS E 911 PRO E 912 -145.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LP3 A 746 943 UNP P39523 YM11_YEAST 746 943 DBREF 6LP3 B 746 943 UNP P39523 YM11_YEAST 746 943 DBREF 6LP3 C 1 99 UNP P32873 BEM3_YEAST 1 99 DBREF 6LP3 D 746 943 UNP P39523 YM11_YEAST 746 943 DBREF 6LP3 E 746 943 UNP P39523 YM11_YEAST 746 943 DBREF 6LP3 F 1 99 UNP P32873 BEM3_YEAST 1 99 SEQRES 1 A 198 GLY SER PRO SER LYS THR LYS SER ALA PRO VAL SER TYR SEQRES 2 A 198 ASP LYS ASP GLY MET ASN ALA SER GLU GLU ASP PHE SER SEQRES 3 A 198 PHE ASP ASN THR LEU ALA LYS PRO TYR GLU PRO LEU TYR SEQRES 4 A 198 ALA ARG ARG GLY ASP ILE THR SER ALA GLY SER THR SER SEQRES 5 A 198 GLY GLU ASP SER SER GLN PRO LYS MET ILE THR ILE SER SEQRES 6 A 198 GLY GLU GLN LEU ASN LEU ILE THR GLU ASN LYS GLU LEU SEQRES 7 A 198 MET ASN GLU LEU THR LEU VAL SER THR GLU LEU ALA GLU SEQRES 8 A 198 SER ILE LYS ARG GLU THR GLU LEU GLU GLU ARG ILE ARG SEQRES 9 A 198 LEU TYR GLU THR ASN ASN SER ALA PRO SER PHE ASP ASP SEQRES 10 A 198 SER SER SER VAL SER PHE SER ASP PHE GLU LYS GLU LEU SEQRES 11 A 198 ARG LYS LYS SER SER LYS ILE VAL GLN LEU ILE GLN GLN SEQRES 12 A 198 LEU ASN ASP GLU ARG LEU LYS ARG PHE ILE ALA GLU GLU SEQRES 13 A 198 GLN LEU LEU LEU GLN GLU ASN GLY THR LYS PRO SER SER SEQRES 14 A 198 MET GLU LEU VAL GLY ARG ILE GLU ASN LEU ASN LYS LEU SEQRES 15 A 198 ILE ASP GLU ARG ASP SER GLU ILE GLU MET LEU LYS GLY SEQRES 16 A 198 ARG LEU GLN SEQRES 1 B 198 GLY SER PRO SER LYS THR LYS SER ALA PRO VAL SER TYR SEQRES 2 B 198 ASP LYS ASP GLY MET ASN ALA SER GLU GLU ASP PHE SER SEQRES 3 B 198 PHE ASP ASN THR LEU ALA LYS PRO TYR GLU PRO LEU TYR SEQRES 4 B 198 ALA ARG ARG GLY ASP ILE THR SER ALA GLY SER THR SER SEQRES 5 B 198 GLY GLU ASP SER SER GLN PRO LYS MET ILE THR ILE SER SEQRES 6 B 198 GLY GLU GLN LEU ASN LEU ILE THR GLU ASN LYS GLU LEU SEQRES 7 B 198 MET ASN GLU LEU THR LEU VAL SER THR GLU LEU ALA GLU SEQRES 8 B 198 SER ILE LYS ARG GLU THR GLU LEU GLU GLU ARG ILE ARG SEQRES 9 B 198 LEU TYR GLU THR ASN ASN SER ALA PRO SER PHE ASP ASP SEQRES 10 B 198 SER SER SER VAL SER PHE SER ASP PHE GLU LYS GLU LEU SEQRES 11 B 198 ARG LYS LYS SER SER LYS ILE VAL GLN LEU ILE GLN GLN SEQRES 12 B 198 LEU ASN ASP GLU ARG LEU LYS ARG PHE ILE ALA GLU GLU SEQRES 13 B 198 GLN LEU LEU LEU GLN GLU ASN GLY THR LYS PRO SER SER SEQRES 14 B 198 MET GLU LEU VAL GLY ARG ILE GLU ASN LEU ASN LYS LEU SEQRES 15 B 198 ILE ASP GLU ARG ASP SER GLU ILE GLU MET LEU LYS GLY SEQRES 16 B 198 ARG LEU GLN SEQRES 1 C 99 MET THR ASP ASN LEU THR THR THR HIS GLY GLY SER THR SEQRES 2 C 99 THR LEU GLU LEU LEU ALA GLN TYR ASN ASP HIS ARG SER SEQRES 3 C 99 LYS LYS ASP LYS SER ILE GLU HIS ILE GLU LYS GLY THR SEQRES 4 C 99 CYS SER GLY LYS GLU ARG ASN PRO SER TYR ASP GLU ILE SEQRES 5 C 99 PHE THR GLU ASN ILE LYS LEU LYS LEU GLN VAL GLN GLU SEQRES 6 C 99 TYR GLU THR GLU ILE GLU SER LEU GLU LYS VAL ILE ASP SEQRES 7 C 99 MET LEU GLN LYS ASN ARG GLU ALA SER LEU GLU VAL VAL SEQRES 8 C 99 LEU GLU GLN VAL GLN ASN ASP SER SEQRES 1 D 198 GLY SER PRO SER LYS THR LYS SER ALA PRO VAL SER TYR SEQRES 2 D 198 ASP LYS ASP GLY MET ASN ALA SER GLU GLU ASP PHE SER SEQRES 3 D 198 PHE ASP ASN THR LEU ALA LYS PRO TYR GLU PRO LEU TYR SEQRES 4 D 198 ALA ARG ARG GLY ASP ILE THR SER ALA GLY SER THR SER SEQRES 5 D 198 GLY GLU ASP SER SER GLN PRO LYS MET ILE THR ILE SER SEQRES 6 D 198 GLY GLU GLN LEU ASN LEU ILE THR GLU ASN LYS GLU LEU SEQRES 7 D 198 MET ASN GLU LEU THR LEU VAL SER THR GLU LEU ALA GLU SEQRES 8 D 198 SER ILE LYS ARG GLU THR GLU LEU GLU GLU ARG ILE ARG SEQRES 9 D 198 LEU TYR GLU THR ASN ASN SER ALA PRO SER PHE ASP ASP SEQRES 10 D 198 SER SER SER VAL SER PHE SER ASP PHE GLU LYS GLU LEU SEQRES 11 D 198 ARG LYS LYS SER SER LYS ILE VAL GLN LEU ILE GLN GLN SEQRES 12 D 198 LEU ASN ASP GLU ARG LEU LYS ARG PHE ILE ALA GLU GLU SEQRES 13 D 198 GLN LEU LEU LEU GLN GLU ASN GLY THR LYS PRO SER SER SEQRES 14 D 198 MET GLU LEU VAL GLY ARG ILE GLU ASN LEU ASN LYS LEU SEQRES 15 D 198 ILE ASP GLU ARG ASP SER GLU ILE GLU MET LEU LYS GLY SEQRES 16 D 198 ARG LEU GLN SEQRES 1 E 198 GLY SER PRO SER LYS THR LYS SER ALA PRO VAL SER TYR SEQRES 2 E 198 ASP LYS ASP GLY MET ASN ALA SER GLU GLU ASP PHE SER SEQRES 3 E 198 PHE ASP ASN THR LEU ALA LYS PRO TYR GLU PRO LEU TYR SEQRES 4 E 198 ALA ARG ARG GLY ASP ILE THR SER ALA GLY SER THR SER SEQRES 5 E 198 GLY GLU ASP SER SER GLN PRO LYS MET ILE THR ILE SER SEQRES 6 E 198 GLY GLU GLN LEU ASN LEU ILE THR GLU ASN LYS GLU LEU SEQRES 7 E 198 MET ASN GLU LEU THR LEU VAL SER THR GLU LEU ALA GLU SEQRES 8 E 198 SER ILE LYS ARG GLU THR GLU LEU GLU GLU ARG ILE ARG SEQRES 9 E 198 LEU TYR GLU THR ASN ASN SER ALA PRO SER PHE ASP ASP SEQRES 10 E 198 SER SER SER VAL SER PHE SER ASP PHE GLU LYS GLU LEU SEQRES 11 E 198 ARG LYS LYS SER SER LYS ILE VAL GLN LEU ILE GLN GLN SEQRES 12 E 198 LEU ASN ASP GLU ARG LEU LYS ARG PHE ILE ALA GLU GLU SEQRES 13 E 198 GLN LEU LEU LEU GLN GLU ASN GLY THR LYS PRO SER SER SEQRES 14 E 198 MET GLU LEU VAL GLY ARG ILE GLU ASN LEU ASN LYS LEU SEQRES 15 E 198 ILE ASP GLU ARG ASP SER GLU ILE GLU MET LEU LYS GLY SEQRES 16 E 198 ARG LEU GLN SEQRES 1 F 99 MET THR ASP ASN LEU THR THR THR HIS GLY GLY SER THR SEQRES 2 F 99 THR LEU GLU LEU LEU ALA GLN TYR ASN ASP HIS ARG SER SEQRES 3 F 99 LYS LYS ASP LYS SER ILE GLU HIS ILE GLU LYS GLY THR SEQRES 4 F 99 CYS SER GLY LYS GLU ARG ASN PRO SER TYR ASP GLU ILE SEQRES 5 F 99 PHE THR GLU ASN ILE LYS LEU LYS LEU GLN VAL GLN GLU SEQRES 6 F 99 TYR GLU THR GLU ILE GLU SER LEU GLU LYS VAL ILE ASP SEQRES 7 F 99 MET LEU GLN LYS ASN ARG GLU ALA SER LEU GLU VAL VAL SEQRES 8 F 99 LEU GLU GLN VAL GLN ASN ASP SER HELIX 1 AA1 GLU A 822 LEU A 850 1 29 HELIX 2 AA2 VAL A 866 GLU A 874 1 9 HELIX 3 AA3 GLU A 874 LEU A 904 1 31 HELIX 4 AA4 SER A 914 LYS A 939 1 26 HELIX 5 AA5 SER B 810 GLU B 812 5 3 HELIX 6 AA6 GLN B 813 LEU B 850 1 38 HELIX 7 AA7 SER B 869 GLU B 874 1 6 HELIX 8 AA8 LYS B 877 ASN B 908 1 32 HELIX 9 AA9 SER B 913 LEU B 938 1 26 HELIX 10 AB1 ASP C 50 VAL C 91 1 42 HELIX 11 AB2 GLU D 819 GLU D 852 1 34 HELIX 12 AB3 VAL D 866 LYS D 873 1 8 HELIX 13 AB4 ARG D 876 GLN D 906 1 31 HELIX 14 AB5 MET D 915 LYS D 939 1 25 HELIX 15 AB6 GLU E 812 LEU E 850 1 39 HELIX 16 AB7 SER E 869 THR E 910 1 42 HELIX 17 AB8 MET E 915 LEU E 938 1 24 HELIX 18 AB9 ASP F 50 VAL F 76 1 27 HELIX 19 AC1 LEU F 80 VAL F 91 1 12 CISPEP 1 ASN A 815 LEU A 816 0 -26.27 CRYST1 119.405 119.405 144.575 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008375 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006917 0.00000