HEADER HYDROLASE 10-JAN-20 6LPG TITLE HUMAN VASH1-SVBP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TUBULIN CARBOXYPEPTIDASE 1,TYROSINE CARBOXYPEPTIDASE 1,TTCP COMPND 5 1,VASOHIBIN-1; COMPND 6 EC: 3.4.17.17; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VASH1, KIAA1036, VASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: SVBP, CCDC23; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TUBULIN CARBOXYPEPTIDASES, MICROTUBULE MODIFICATION, ANGIOGENESIS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.IKEDA,T.NISHINO REVDAT 2 29-NOV-23 6LPG 1 REMARK REVDAT 1 21-OCT-20 6LPG 0 JRNL AUTH A.IKEDA,S.URATA,T.ANDO,Y.SUZUKI,Y.SATO,T.NISHINO JRNL TITL THE CRYSTAL STRUCTURE OF THE TETRAMERIC HUMAN JRNL TITL 2 VASOHIBIN-1-SVBP COMPLEX REVEALS A VARIABLE ARM REGION JRNL TITL 3 WITHIN THE STRUCTURAL CORE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 76 993 2020 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 33021501 JRNL DOI 10.1107/S2059798320011298 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.1100 1.00 1422 159 0.2209 0.2742 REMARK 3 2 5.1100 - 4.0600 0.99 1300 144 0.1781 0.2071 REMARK 3 3 4.0600 - 3.5500 1.00 1280 143 0.1619 0.2098 REMARK 3 4 3.5500 - 3.2200 1.00 1272 140 0.1767 0.2140 REMARK 3 5 3.2200 - 2.9900 1.00 1238 138 0.1796 0.2006 REMARK 3 6 2.9900 - 2.8100 1.00 1259 140 0.1837 0.2552 REMARK 3 7 2.8100 - 2.6700 1.00 1237 137 0.1825 0.2779 REMARK 3 8 2.6700 - 2.5600 1.00 1233 138 0.2056 0.2608 REMARK 3 9 2.5600 - 2.4600 1.00 1244 138 0.2144 0.2606 REMARK 3 10 2.4600 - 2.3700 1.00 1217 135 0.2175 0.2732 REMARK 3 11 2.3700 - 2.3000 1.00 1224 136 0.2323 0.3029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.266 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2332 REMARK 3 ANGLE : 0.851 3148 REMARK 3 CHIRALITY : 0.049 332 REMARK 3 PLANARITY : 0.005 405 REMARK 3 DIHEDRAL : 17.571 893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6644 15.4664 -16.0547 REMARK 3 T TENSOR REMARK 3 T11: 0.4201 T22: 0.4545 REMARK 3 T33: 0.8694 T12: 0.0185 REMARK 3 T13: -0.0786 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 1.4343 L22: 4.5160 REMARK 3 L33: 1.6750 L12: 0.9367 REMARK 3 L13: -0.1527 L23: 0.7555 REMARK 3 S TENSOR REMARK 3 S11: -0.1857 S12: 0.2445 S13: 0.5860 REMARK 3 S21: 0.1538 S22: -0.0285 S23: 1.0412 REMARK 3 S31: -0.1498 S32: -0.0574 S33: 0.1025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9671 17.3467 -26.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.5432 T22: 0.4179 REMARK 3 T33: 0.3599 T12: -0.0890 REMARK 3 T13: -0.0785 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.4106 L22: 2.6838 REMARK 3 L33: 2.6343 L12: 1.9212 REMARK 3 L13: -0.9018 L23: -0.9470 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.7197 S13: -0.0087 REMARK 3 S21: -0.5564 S22: 0.1568 S23: 0.1033 REMARK 3 S31: -0.5376 S32: 0.0495 S33: -0.1665 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2507 8.9866 -15.6176 REMARK 3 T TENSOR REMARK 3 T11: 0.4580 T22: 0.3538 REMARK 3 T33: 0.4287 T12: -0.0739 REMARK 3 T13: -0.0053 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 4.0815 L22: 3.3362 REMARK 3 L33: 0.7853 L12: -0.1520 REMARK 3 L13: -0.0163 L23: 0.1659 REMARK 3 S TENSOR REMARK 3 S11: -0.2958 S12: -0.0787 S13: -0.0985 REMARK 3 S21: 0.1862 S22: 0.1585 S23: 0.6413 REMARK 3 S31: 0.1177 S32: -0.3052 S33: -0.0121 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7863 13.8860 -7.2890 REMARK 3 T TENSOR REMARK 3 T11: 0.3484 T22: 0.2390 REMARK 3 T33: 0.2605 T12: -0.0096 REMARK 3 T13: 0.0249 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 2.7634 L22: 1.7764 REMARK 3 L33: 5.9873 L12: -0.3474 REMARK 3 L13: -0.4684 L23: -0.3824 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: -0.2001 S13: 0.2236 REMARK 3 S21: 0.2584 S22: 0.2496 S23: -0.1022 REMARK 3 S31: -0.1860 S32: 0.0918 S33: -0.0267 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7293 20.5688 -11.4995 REMARK 3 T TENSOR REMARK 3 T11: 0.4862 T22: 0.3295 REMARK 3 T33: 0.4619 T12: 0.0244 REMARK 3 T13: -0.0129 T23: -0.0771 REMARK 3 L TENSOR REMARK 3 L11: 2.7570 L22: 4.4352 REMARK 3 L33: 4.6548 L12: -1.4033 REMARK 3 L13: -2.3549 L23: 1.0268 REMARK 3 S TENSOR REMARK 3 S11: -0.1576 S12: -0.2942 S13: 1.3114 REMARK 3 S21: 0.4523 S22: 0.3485 S23: 0.2476 REMARK 3 S31: -0.3657 S32: -0.1124 S33: 0.0463 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6936 22.1271 -7.2274 REMARK 3 T TENSOR REMARK 3 T11: 0.5300 T22: 0.2266 REMARK 3 T33: 0.3100 T12: -0.0574 REMARK 3 T13: -0.0221 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 5.7943 L22: 3.6883 REMARK 3 L33: 7.0301 L12: -0.5451 REMARK 3 L13: 0.5439 L23: 0.4999 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.1611 S13: 0.6350 REMARK 3 S21: 0.6699 S22: -0.1303 S23: -0.3424 REMARK 3 S31: -0.5049 S32: 0.3977 S33: 0.1310 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8931 9.6999 -6.6439 REMARK 3 T TENSOR REMARK 3 T11: 0.4804 T22: 0.2969 REMARK 3 T33: 0.3684 T12: 0.0482 REMARK 3 T13: 0.0633 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.5659 L22: 7.2598 REMARK 3 L33: 9.8770 L12: -0.3012 REMARK 3 L13: -0.2720 L23: 6.7841 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.1278 S13: -0.1253 REMARK 3 S21: 0.4234 S22: 0.6615 S23: -0.3113 REMARK 3 S31: 0.4088 S32: 0.5842 S33: -0.6417 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7271 7.4237 0.1587 REMARK 3 T TENSOR REMARK 3 T11: 0.6749 T22: 0.6874 REMARK 3 T33: 0.3705 T12: -0.0063 REMARK 3 T13: 0.0063 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 5.2491 L22: 6.1046 REMARK 3 L33: 8.3658 L12: 2.3618 REMARK 3 L13: 4.0551 L23: 5.2111 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: -0.9827 S13: -0.2205 REMARK 3 S21: 0.9549 S22: 0.0827 S23: -0.0529 REMARK 3 S31: 0.9567 S32: 0.3300 S33: 0.0509 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3488 9.9268 -2.4991 REMARK 3 T TENSOR REMARK 3 T11: 0.9166 T22: 1.0489 REMARK 3 T33: 0.8953 T12: 0.1539 REMARK 3 T13: -0.0526 T23: 0.2807 REMARK 3 L TENSOR REMARK 3 L11: 8.7541 L22: 3.4873 REMARK 3 L33: 3.4315 L12: -2.6805 REMARK 3 L13: -2.1759 L23: 3.4437 REMARK 3 S TENSOR REMARK 3 S11: -0.4332 S12: -0.1790 S13: -0.3252 REMARK 3 S21: -0.5770 S22: -0.4399 S23: -0.5877 REMARK 3 S31: 0.4435 S32: 1.4299 S33: 0.4687 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1626 20.8486 -18.3691 REMARK 3 T TENSOR REMARK 3 T11: 0.4476 T22: 0.4116 REMARK 3 T33: 0.8265 T12: 0.0619 REMARK 3 T13: -0.1304 T23: 0.1440 REMARK 3 L TENSOR REMARK 3 L11: 4.2085 L22: 8.5727 REMARK 3 L33: 6.2529 L12: 2.4392 REMARK 3 L13: 0.2143 L23: 4.2644 REMARK 3 S TENSOR REMARK 3 S11: -0.2110 S12: 0.5574 S13: 0.2576 REMARK 3 S21: -0.3771 S22: 0.3403 S23: 0.5485 REMARK 3 S31: -0.3765 S32: 0.2497 S33: -0.0852 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300014372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01637 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24350 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6NVQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 0.08 M SODIUM REMARK 280 ACETATE PH4.6, 20%(W/V) PEG4000, 20%(V/V) GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.93700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.87400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.90550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 179.84250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.96850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.93700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 143.87400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 179.84250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.90550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.96850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 305 REMARK 465 GLY A 306 REMARK 465 LYS A 307 REMARK 465 GLY A 308 REMARK 465 THR A 309 REMARK 465 GLY A 310 REMARK 465 GLY A 311 REMARK 465 GLY B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 LYS B 25 REMARK 465 PHE B 54 REMARK 465 ASP B 55 REMARK 465 GLU B 56 REMARK 465 PHE B 57 REMARK 465 CYS B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 60 REMARK 465 MET B 61 REMARK 465 GLN B 62 REMARK 465 PRO B 63 REMARK 465 PRO B 64 REMARK 465 GLY B 65 REMARK 465 GLU B 66 REMARK 465 GLY B 67 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 83 CG CD CE NZ REMARK 480 LYS A 90 CD CE NZ REMARK 480 LYS A 103 CD CE NZ REMARK 480 ARG A 284 CZ NH1 NH2 REMARK 480 LYS A 292 CG CD CE NZ REMARK 480 ARG A 299 NE CZ NH1 NH2 REMARK 480 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 304 CE NZ REMARK 480 GLU B 50 CG CD OE1 OE2 REMARK 480 GLN B 51 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 60 53.86 -153.06 REMARK 500 ASP A 87 47.02 -104.55 REMARK 500 GLN A 133 150.54 83.31 REMARK 500 LYS A 168 -152.89 -117.70 REMARK 500 MET A 227 -104.10 -141.05 REMARK 500 PRO A 231 81.80 -69.30 REMARK 500 ARG A 287 -57.15 -120.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 DBREF 6LPG A 56 310 UNP Q7L8A9 VASH1_HUMAN 56 310 DBREF 6LPG B 2 66 UNP Q8N300 SVBP_HUMAN 2 66 SEQADV 6LPG GLY A 311 UNP Q7L8A9 EXPRESSION TAG SEQADV 6LPG GLY B 1 UNP Q8N300 EXPRESSION TAG SEQADV 6LPG GLY B 67 UNP Q8N300 EXPRESSION TAG SEQRES 1 A 256 GLY GLY VAL PRO PHE PHE VAL ASN ARG GLY GLY LEU PRO SEQRES 2 A 256 VAL ASP GLU ALA THR TRP GLU ARG MET TRP LYS HIS VAL SEQRES 3 A 256 ALA LYS ILE HIS PRO ASP GLY GLU LYS VAL ALA GLN ARG SEQRES 4 A 256 ILE ARG GLY ALA THR ASP LEU PRO LYS ILE PRO ILE PRO SEQRES 5 A 256 SER VAL PRO THR PHE GLN PRO SER THR PRO VAL PRO GLU SEQRES 6 A 256 ARG LEU GLU ALA VAL GLN ARG TYR ILE ARG GLU LEU GLN SEQRES 7 A 256 TYR ASN HIS THR GLY THR GLN PHE PHE GLU ILE LYS LYS SEQRES 8 A 256 SER ARG PRO LEU THR GLY LEU MET ASP LEU ALA LYS GLU SEQRES 9 A 256 MET THR LYS GLU ALA LEU PRO ILE LYS CYS LEU GLU ALA SEQRES 10 A 256 VAL ILE LEU GLY ILE TYR LEU THR ASN SER MET PRO THR SEQRES 11 A 256 LEU GLU ARG PHE PRO ILE SER PHE LYS THR TYR PHE SER SEQRES 12 A 256 GLY ASN TYR PHE ARG HIS ILE VAL LEU GLY VAL ASN PHE SEQRES 13 A 256 ALA GLY ARG TYR GLY ALA LEU GLY MET SER ARG ARG GLU SEQRES 14 A 256 ASP LEU MET TYR LYS PRO PRO ALA PHE ARG THR LEU SER SEQRES 15 A 256 GLU LEU VAL LEU ASP PHE GLU ALA ALA TYR GLY ARG CYS SEQRES 16 A 256 TRP HIS VAL LEU LYS LYS VAL LYS LEU GLY GLN SER VAL SEQRES 17 A 256 SER HIS ASP PRO HIS SER VAL GLU GLN ILE GLU TRP LYS SEQRES 18 A 256 HIS SER VAL LEU ASP VAL GLU ARG LEU GLY ARG ASP ASP SEQRES 19 A 256 PHE ARG LYS GLU LEU GLU ARG HIS ALA ARG ASP MET ARG SEQRES 20 A 256 LEU LYS ILE GLY LYS GLY THR GLY GLY SEQRES 1 B 67 GLY ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL LYS SEQRES 2 B 67 GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SER SEQRES 3 B 67 ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU ILE SEQRES 4 B 67 TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN GLN SEQRES 5 B 67 GLN PHE ASP GLU PHE CYS LYS GLN MET GLN PRO PRO GLY SEQRES 6 B 67 GLU GLY HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *76(H2 O) HELIX 1 AA1 ASP A 70 HIS A 85 1 16 HELIX 2 AA2 ASP A 87 ARG A 96 1 10 HELIX 3 AA3 PRO A 117 LEU A 132 1 16 HELIX 4 AA4 PRO A 149 ALA A 164 1 16 HELIX 5 AA5 LYS A 168 ASN A 181 1 14 HELIX 6 AA6 ARG A 223 MET A 227 5 5 HELIX 7 AA7 THR A 235 CYS A 250 1 16 HELIX 8 AA8 VAL A 282 GLY A 286 1 5 HELIX 9 AA9 ARG A 287 LEU A 303 1 17 HELIX 10 AB1 ALA B 27 GLN B 52 1 26 SHEET 1 AA1 6 LYS A 229 PHE A 233 0 SHEET 2 AA1 6 ARG A 214 LEU A 218 -1 N ALA A 217 O LYS A 229 SHEET 3 AA1 6 ASN A 200 PHE A 211 -1 N PHE A 211 O ARG A 214 SHEET 4 AA1 6 LEU A 186 PHE A 197 -1 N PHE A 193 O HIS A 204 SHEET 5 AA1 6 VAL A 253 LEU A 259 -1 O VAL A 253 N TYR A 196 SHEET 6 AA1 6 SER A 278 ASP A 281 -1 O SER A 278 N LEU A 259 CISPEP 1 LEU A 67 PRO A 68 0 -6.25 SITE 1 AC1 5 TYR A 134 HIS A 204 SER A 221 ARG A 222 SITE 2 AC1 5 HOH A 515 SITE 1 AC2 4 ILE A 273 GLU A 274 TRP A 275 LYS A 276 SITE 1 AC3 2 ARG A 203 HIS A 268 SITE 1 AC4 5 ARG A 76 LYS A 79 SER B 26 ALA B 27 SITE 2 AC4 5 GLN B 28 CRYST1 71.854 71.854 215.811 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013917 0.008035 0.000000 0.00000 SCALE2 0.000000 0.016070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004634 0.00000