HEADER OXIDOREDUCTASE 12-JAN-20 6LPN TITLE CRYSTAL STRUCTURE OF HUMAN D-2-HYDROXYGLUTARATE DEHYDROGENASE IN APO TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.99.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: D2HGDH, D2HGD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.YANG,H.ZHU,J.DING REVDAT 3 29-NOV-23 6LPN 1 REMARK REVDAT 2 28-JUL-21 6LPN 1 JRNL REVDAT 1 13-JAN-21 6LPN 0 JRNL AUTH J.YANG,H.ZHU,T.ZHANG,J.DING JRNL TITL STRUCTURE, SUBSTRATE SPECIFICITY, AND CATALYTIC MECHANISM OF JRNL TITL 2 HUMAN D-2-HGDH AND INSIGHTS INTO PATHOGENICITY OF JRNL TITL 3 DISEASE-ASSOCIATED MUTATIONS. JRNL REF CELL DISCOV V. 7 3 2021 JRNL REFN ESSN 2056-5968 JRNL PMID 33431826 JRNL DOI 10.1038/S41421-020-00227-0 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15RC1_3420 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 45004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 2356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8340 - 5.6679 0.99 2560 143 0.1720 0.1977 REMARK 3 2 5.6679 - 4.5008 0.99 2520 146 0.1587 0.1896 REMARK 3 3 4.5008 - 3.9324 1.00 2540 152 0.1382 0.1654 REMARK 3 4 3.9324 - 3.5731 0.99 2525 136 0.1485 0.1932 REMARK 3 5 3.5731 - 3.3172 1.00 2501 140 0.1544 0.1900 REMARK 3 6 3.3172 - 3.1217 1.00 2549 143 0.1673 0.2319 REMARK 3 7 3.1217 - 2.9654 1.00 2532 132 0.1660 0.2385 REMARK 3 8 2.9654 - 2.8363 1.00 2520 144 0.1635 0.2420 REMARK 3 9 2.8363 - 2.7272 0.99 2538 120 0.1719 0.2488 REMARK 3 10 2.7272 - 2.6331 1.00 2502 132 0.1740 0.2405 REMARK 3 11 2.6331 - 2.5508 1.00 2522 145 0.1783 0.2545 REMARK 3 12 2.5508 - 2.4779 1.00 2484 141 0.1861 0.2461 REMARK 3 13 2.4779 - 2.4126 1.00 2496 160 0.1899 0.2805 REMARK 3 14 2.4126 - 2.3538 1.00 2531 155 0.1892 0.2545 REMARK 3 15 2.3538 - 2.3003 1.00 2522 122 0.1962 0.2477 REMARK 3 16 2.3003 - 2.2513 1.00 2491 139 0.2055 0.2766 REMARK 3 17 2.2513 - 2.2063 0.92 2315 106 0.2312 0.3085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7283 REMARK 3 ANGLE : 1.062 9915 REMARK 3 CHIRALITY : 0.064 1143 REMARK 3 PLANARITY : 0.006 1264 REMARK 3 DIHEDRAL : 15.931 4267 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.435 -18.869 43.829 REMARK 3 T TENSOR REMARK 3 T11: 0.1279 T22: 0.1443 REMARK 3 T33: 0.1378 T12: -0.0007 REMARK 3 T13: -0.0064 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0485 L22: 0.2465 REMARK 3 L33: 0.1547 L12: 0.0062 REMARK 3 L13: -0.0335 L23: 0.0180 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.0184 S13: 0.0124 REMARK 3 S21: -0.0393 S22: 0.0102 S23: 0.0093 REMARK 3 S31: -0.0006 S32: 0.0053 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.26900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3PM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, PH 6.5, 25% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.42950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 PRO A 48 REMARK 465 GLY A 49 REMARK 465 SER A 50 REMARK 465 ARG A 51 REMARK 465 TYR A 52 REMARK 465 PRO A 53 REMARK 465 GLN A 520 REMARK 465 ALA A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 GLY B 47 REMARK 465 PRO B 48 REMARK 465 GLY B 49 REMARK 465 SER B 50 REMARK 465 ARG B 51 REMARK 465 TYR B 52 REMARK 465 GLN B 520 REMARK 465 ALA B 521 REMARK 465 HIS B 522 REMARK 465 HIS B 523 REMARK 465 HIS B 524 REMARK 465 HIS B 525 REMARK 465 HIS B 526 REMARK 465 HIS B 527 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 65 CG CD OE1 NE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 HIS A 356 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 376 CG CD OE1 NE2 REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 PRO B 53 CG CD REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 ARG B 323 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 376 CG CD OE1 NE2 REMARK 470 ARG B 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 378 CG CD CE NZ REMARK 470 LYS B 380 CG CD CE NZ REMARK 470 GLU B 447 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 803 O HOH A 894 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 299 CB CYS B 299 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 192 CA - CB - CG ANGL. DEV. = 21.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 143 -111.36 -123.92 REMARK 500 LEU A 239 57.07 -91.98 REMARK 500 ASN A 246 51.22 -99.21 REMARK 500 THR A 247 67.86 -102.63 REMARK 500 GLU A 475 -53.12 -128.03 REMARK 500 THR A 516 -45.82 64.50 REMARK 500 SER B 60 -176.90 -69.96 REMARK 500 PHE B 143 -111.28 -113.01 REMARK 500 MET B 153 71.31 -100.30 REMARK 500 ASP B 245 97.84 -168.81 REMARK 500 ASN B 246 55.27 -104.67 REMARK 500 THR B 247 71.91 -105.09 REMARK 500 GLU B 475 -36.83 -132.88 REMARK 500 VAL B 478 -66.35 -104.38 REMARK 500 THR B 516 -48.10 57.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 601 DBREF 6LPN A 51 521 UNP Q8N465 D2HDH_HUMAN 51 521 DBREF 6LPN B 51 521 UNP Q8N465 D2HDH_HUMAN 51 521 SEQADV 6LPN GLY A 47 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN PRO A 48 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN GLY A 49 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN SER A 50 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS A 522 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS A 523 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS A 524 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS A 525 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS A 526 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS A 527 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN GLY B 47 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN PRO B 48 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN GLY B 49 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN SER B 50 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS B 522 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS B 523 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS B 524 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS B 525 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS B 526 UNP Q8N465 EXPRESSION TAG SEQADV 6LPN HIS B 527 UNP Q8N465 EXPRESSION TAG SEQRES 1 A 481 GLY PRO GLY SER ARG TYR PRO VAL ARG ARG LEU PRO PHE SEQRES 2 A 481 SER THR VAL SER LYS GLN ASP LEU ALA ALA PHE GLU ARG SEQRES 3 A 481 ILE VAL PRO GLY GLY VAL VAL THR ASP PRO GLU ALA LEU SEQRES 4 A 481 GLN ALA PRO ASN VAL ASP TRP LEU ARG THR LEU ARG GLY SEQRES 5 A 481 CYS SER LYS VAL LEU LEU ARG PRO ARG THR SER GLU GLU SEQRES 6 A 481 VAL SER HIS ILE LEU ARG HIS CYS HIS GLU ARG ASN LEU SEQRES 7 A 481 ALA VAL ASN PRO GLN GLY GLY ASN THR GLY MET VAL GLY SEQRES 8 A 481 GLY SER VAL PRO VAL PHE ASP GLU ILE ILE LEU SER THR SEQRES 9 A 481 ALA ARG MET ASN ARG VAL LEU SER PHE HIS SER VAL SER SEQRES 10 A 481 GLY ILE LEU VAL CYS GLN ALA GLY CYS VAL LEU GLU GLU SEQRES 11 A 481 LEU SER ARG TYR VAL GLU GLU ARG ASP PHE ILE MET PRO SEQRES 12 A 481 LEU ASP LEU GLY ALA LYS GLY SER CYS HIS ILE GLY GLY SEQRES 13 A 481 ASN VAL ALA THR ASN ALA GLY GLY LEU ARG PHE LEU ARG SEQRES 14 A 481 TYR GLY SER LEU HIS GLY THR VAL LEU GLY LEU GLU VAL SEQRES 15 A 481 VAL LEU ALA ASP GLY THR VAL LEU ASP CYS LEU THR SER SEQRES 16 A 481 LEU ARG LYS ASP ASN THR GLY TYR ASP LEU LYS GLN LEU SEQRES 17 A 481 PHE ILE GLY SER GLU GLY THR LEU GLY ILE ILE THR THR SEQRES 18 A 481 VAL SER ILE LEU CYS PRO PRO LYS PRO ARG ALA VAL ASN SEQRES 19 A 481 VAL ALA PHE LEU GLY CYS PRO GLY PHE ALA GLU VAL LEU SEQRES 20 A 481 GLN THR PHE SER THR CYS LYS GLY MET LEU GLY GLU ILE SEQRES 21 A 481 LEU SER ALA PHE GLU PHE MET ASP ALA VAL CYS MET GLN SEQRES 22 A 481 LEU VAL GLY ARG HIS LEU HIS LEU ALA SER PRO VAL GLN SEQRES 23 A 481 GLU SER PRO PHE TYR VAL LEU ILE GLU THR SER GLY SER SEQRES 24 A 481 ASN ALA GLY HIS ASP ALA GLU LYS LEU GLY HIS PHE LEU SEQRES 25 A 481 GLU HIS ALA LEU GLY SER GLY LEU VAL THR ASP GLY THR SEQRES 26 A 481 MET ALA THR ASP GLN ARG LYS VAL LYS MET LEU TRP ALA SEQRES 27 A 481 LEU ARG GLU ARG ILE THR GLU ALA LEU SER ARG ASP GLY SEQRES 28 A 481 TYR VAL TYR LYS TYR ASP LEU SER LEU PRO VAL GLU ARG SEQRES 29 A 481 LEU TYR ASP ILE VAL THR ASP LEU ARG ALA ARG LEU GLY SEQRES 30 A 481 PRO HIS ALA LYS HIS VAL VAL GLY TYR GLY HIS LEU GLY SEQRES 31 A 481 ASP GLY ASN LEU HIS LEU ASN VAL THR ALA GLU ALA PHE SEQRES 32 A 481 SER PRO SER LEU LEU ALA ALA LEU GLU PRO HIS VAL TYR SEQRES 33 A 481 GLU TRP THR ALA GLY GLN GLN GLY SER VAL SER ALA GLU SEQRES 34 A 481 HIS GLY VAL GLY PHE ARG LYS ARG ASP VAL LEU GLY TYR SEQRES 35 A 481 SER LYS PRO PRO GLY ALA LEU GLN LEU MET GLN GLN LEU SEQRES 36 A 481 LYS ALA LEU LEU ASP PRO LYS GLY ILE LEU ASN PRO TYR SEQRES 37 A 481 LYS THR LEU PRO SER GLN ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 481 GLY PRO GLY SER ARG TYR PRO VAL ARG ARG LEU PRO PHE SEQRES 2 B 481 SER THR VAL SER LYS GLN ASP LEU ALA ALA PHE GLU ARG SEQRES 3 B 481 ILE VAL PRO GLY GLY VAL VAL THR ASP PRO GLU ALA LEU SEQRES 4 B 481 GLN ALA PRO ASN VAL ASP TRP LEU ARG THR LEU ARG GLY SEQRES 5 B 481 CYS SER LYS VAL LEU LEU ARG PRO ARG THR SER GLU GLU SEQRES 6 B 481 VAL SER HIS ILE LEU ARG HIS CYS HIS GLU ARG ASN LEU SEQRES 7 B 481 ALA VAL ASN PRO GLN GLY GLY ASN THR GLY MET VAL GLY SEQRES 8 B 481 GLY SER VAL PRO VAL PHE ASP GLU ILE ILE LEU SER THR SEQRES 9 B 481 ALA ARG MET ASN ARG VAL LEU SER PHE HIS SER VAL SER SEQRES 10 B 481 GLY ILE LEU VAL CYS GLN ALA GLY CYS VAL LEU GLU GLU SEQRES 11 B 481 LEU SER ARG TYR VAL GLU GLU ARG ASP PHE ILE MET PRO SEQRES 12 B 481 LEU ASP LEU GLY ALA LYS GLY SER CYS HIS ILE GLY GLY SEQRES 13 B 481 ASN VAL ALA THR ASN ALA GLY GLY LEU ARG PHE LEU ARG SEQRES 14 B 481 TYR GLY SER LEU HIS GLY THR VAL LEU GLY LEU GLU VAL SEQRES 15 B 481 VAL LEU ALA ASP GLY THR VAL LEU ASP CYS LEU THR SER SEQRES 16 B 481 LEU ARG LYS ASP ASN THR GLY TYR ASP LEU LYS GLN LEU SEQRES 17 B 481 PHE ILE GLY SER GLU GLY THR LEU GLY ILE ILE THR THR SEQRES 18 B 481 VAL SER ILE LEU CYS PRO PRO LYS PRO ARG ALA VAL ASN SEQRES 19 B 481 VAL ALA PHE LEU GLY CYS PRO GLY PHE ALA GLU VAL LEU SEQRES 20 B 481 GLN THR PHE SER THR CYS LYS GLY MET LEU GLY GLU ILE SEQRES 21 B 481 LEU SER ALA PHE GLU PHE MET ASP ALA VAL CYS MET GLN SEQRES 22 B 481 LEU VAL GLY ARG HIS LEU HIS LEU ALA SER PRO VAL GLN SEQRES 23 B 481 GLU SER PRO PHE TYR VAL LEU ILE GLU THR SER GLY SER SEQRES 24 B 481 ASN ALA GLY HIS ASP ALA GLU LYS LEU GLY HIS PHE LEU SEQRES 25 B 481 GLU HIS ALA LEU GLY SER GLY LEU VAL THR ASP GLY THR SEQRES 26 B 481 MET ALA THR ASP GLN ARG LYS VAL LYS MET LEU TRP ALA SEQRES 27 B 481 LEU ARG GLU ARG ILE THR GLU ALA LEU SER ARG ASP GLY SEQRES 28 B 481 TYR VAL TYR LYS TYR ASP LEU SER LEU PRO VAL GLU ARG SEQRES 29 B 481 LEU TYR ASP ILE VAL THR ASP LEU ARG ALA ARG LEU GLY SEQRES 30 B 481 PRO HIS ALA LYS HIS VAL VAL GLY TYR GLY HIS LEU GLY SEQRES 31 B 481 ASP GLY ASN LEU HIS LEU ASN VAL THR ALA GLU ALA PHE SEQRES 32 B 481 SER PRO SER LEU LEU ALA ALA LEU GLU PRO HIS VAL TYR SEQRES 33 B 481 GLU TRP THR ALA GLY GLN GLN GLY SER VAL SER ALA GLU SEQRES 34 B 481 HIS GLY VAL GLY PHE ARG LYS ARG ASP VAL LEU GLY TYR SEQRES 35 B 481 SER LYS PRO PRO GLY ALA LEU GLN LEU MET GLN GLN LEU SEQRES 36 B 481 LYS ALA LEU LEU ASP PRO LYS GLY ILE LEU ASN PRO TYR SEQRES 37 B 481 LYS THR LEU PRO SER GLN ALA HIS HIS HIS HIS HIS HIS HET FAD A 601 53 HET FAD B 601 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *511(H2 O) HELIX 1 AA1 SER A 63 VAL A 74 1 12 HELIX 2 AA2 LEU A 85 VAL A 90 1 6 HELIX 3 AA3 THR A 108 ASN A 123 1 16 HELIX 4 AA4 VAL A 173 GLU A 183 1 11 HELIX 5 AA5 HIS A 199 ASN A 207 1 9 HELIX 6 AA6 ARG A 212 GLY A 217 1 6 HELIX 7 AA7 SER A 218 THR A 222 1 5 HELIX 8 AA8 LEU A 251 ILE A 256 1 6 HELIX 9 AA9 GLY A 288 LEU A 303 1 16 HELIX 10 AB1 ALA A 315 HIS A 326 1 12 HELIX 11 AB2 ASN A 346 SER A 364 1 19 HELIX 12 AB3 ASP A 375 ARG A 388 1 14 HELIX 13 AB4 ARG A 388 ARG A 395 1 8 HELIX 14 AB5 PRO A 407 LEU A 411 5 5 HELIX 15 AB6 TYR A 412 GLY A 423 1 12 HELIX 16 AB7 PRO A 424 ALA A 426 5 3 HELIX 17 AB8 LEU A 435 ASP A 437 5 3 HELIX 18 AB9 SER A 450 GLU A 458 1 9 HELIX 19 AC1 PRO A 459 GLN A 468 1 10 HELIX 20 AC2 VAL A 485 SER A 489 5 5 HELIX 21 AC3 PRO A 491 ASP A 506 1 16 HELIX 22 AC4 SER B 63 VAL B 74 1 12 HELIX 23 AC5 LEU B 85 VAL B 90 1 6 HELIX 24 AC6 THR B 108 ASN B 123 1 16 HELIX 25 AC7 VAL B 173 ARG B 184 1 12 HELIX 26 AC8 HIS B 199 ASN B 207 1 9 HELIX 27 AC9 ARG B 212 GLY B 217 1 6 HELIX 28 AD1 SER B 218 THR B 222 1 5 HELIX 29 AD2 ASP B 250 ILE B 256 5 7 HELIX 30 AD3 GLY B 288 GLY B 304 1 17 HELIX 31 AD4 ALA B 315 HIS B 326 1 12 HELIX 32 AD5 ASN B 346 SER B 364 1 19 HELIX 33 AD6 ASP B 375 ARG B 388 1 14 HELIX 34 AD7 ARG B 388 GLY B 397 1 10 HELIX 35 AD8 PRO B 407 LEU B 411 5 5 HELIX 36 AD9 TYR B 412 GLY B 423 1 12 HELIX 37 AE1 PRO B 424 ALA B 426 5 3 HELIX 38 AE2 HIS B 434 ASP B 437 5 4 HELIX 39 AE3 SER B 450 GLU B 458 1 9 HELIX 40 AE4 PRO B 459 GLN B 468 1 10 HELIX 41 AE5 LYS B 482 SER B 489 5 8 HELIX 42 AE6 PRO B 491 ASP B 506 1 16 SHEET 1 AA1 4 VAL A 78 VAL A 79 0 SHEET 2 AA1 4 LEU A 103 LEU A 104 -1 O LEU A 103 N VAL A 79 SHEET 3 AA1 4 ILE A 146 SER A 149 1 O ILE A 147 N LEU A 104 SHEET 4 AA1 4 VAL A 126 GLN A 129 1 N ASN A 127 O ILE A 146 SHEET 1 AA2 5 VAL A 156 PHE A 159 0 SHEET 2 AA2 5 ILE A 165 GLN A 169 -1 O VAL A 167 N SER A 158 SHEET 3 AA2 5 ILE A 264 LEU A 271 -1 O VAL A 268 N CYS A 168 SHEET 4 AA2 5 VAL A 223 VAL A 229 -1 N GLY A 225 O SER A 269 SHEET 5 AA2 5 VAL A 235 CYS A 238 -1 O LEU A 236 N VAL A 228 SHEET 1 AA3 7 ASP A 369 ALA A 373 0 SHEET 2 AA3 7 ALA A 278 CYS A 286 -1 N GLY A 285 O ASP A 369 SHEET 3 AA3 7 PHE A 336 GLY A 344 -1 O VAL A 338 N LEU A 284 SHEET 4 AA3 7 LEU A 307 ASP A 314 -1 N MET A 313 O TYR A 337 SHEET 5 AA3 7 HIS A 428 HIS A 434 -1 O GLY A 433 N PHE A 312 SHEET 6 AA3 7 ASN A 439 ALA A 446 -1 O HIS A 441 N TYR A 432 SHEET 7 AA3 7 TYR A 398 SER A 405 -1 N TYR A 400 O VAL A 444 SHEET 1 AA4 4 VAL B 78 VAL B 79 0 SHEET 2 AA4 4 LEU B 103 LEU B 104 -1 O LEU B 103 N VAL B 79 SHEET 3 AA4 4 ILE B 146 SER B 149 1 O ILE B 147 N LEU B 104 SHEET 4 AA4 4 VAL B 126 GLN B 129 1 N ASN B 127 O ILE B 146 SHEET 1 AA5 5 VAL B 156 HIS B 160 0 SHEET 2 AA5 5 ILE B 165 GLN B 169 -1 O VAL B 167 N SER B 158 SHEET 3 AA5 5 ILE B 264 LEU B 271 -1 O VAL B 268 N CYS B 168 SHEET 4 AA5 5 VAL B 223 VAL B 229 -1 N GLU B 227 O THR B 266 SHEET 5 AA5 5 VAL B 235 CYS B 238 -1 O LEU B 236 N VAL B 228 SHEET 1 AA6 7 ASP B 369 ALA B 373 0 SHEET 2 AA6 7 ALA B 278 CYS B 286 -1 N GLY B 285 O ASP B 369 SHEET 3 AA6 7 PHE B 336 GLY B 344 -1 O ILE B 340 N ALA B 282 SHEET 4 AA6 7 LEU B 307 ASP B 314 -1 N MET B 313 O TYR B 337 SHEET 5 AA6 7 HIS B 428 GLY B 433 -1 O GLY B 433 N PHE B 312 SHEET 6 AA6 7 ASN B 439 ALA B 446 -1 O HIS B 441 N TYR B 432 SHEET 7 AA6 7 TYR B 398 SER B 405 -1 N TYR B 400 O VAL B 444 CISPEP 1 GLU A 458 PRO A 459 0 8.33 CISPEP 2 GLU B 458 PRO B 459 0 5.43 SITE 1 AC1 33 TRP A 92 PRO A 128 GLY A 130 GLY A 131 SITE 2 AC1 33 ASN A 132 THR A 133 GLY A 134 GLY A 138 SITE 3 AC1 33 SER A 139 LEU A 192 ALA A 194 CYS A 198 SITE 4 AC1 33 HIS A 199 GLY A 202 ASN A 203 ALA A 205 SITE 5 AC1 33 THR A 206 ALA A 208 GLY A 209 GLY A 210 SITE 6 AC1 33 GLU A 259 GLY A 260 GLY A 263 ILE A 264 SITE 7 AC1 33 ILE A 265 THR A 390 GLU A 475 ASN A 512 SITE 8 AC1 33 HOH A 735 HOH A 766 HOH A 771 HOH A 772 SITE 9 AC1 33 HOH A 821 SITE 1 AC2 35 TRP B 92 PRO B 128 GLY B 130 GLY B 131 SITE 2 AC2 35 ASN B 132 THR B 133 GLY B 134 MET B 135 SITE 3 AC2 35 GLY B 138 SER B 139 LEU B 192 ALA B 194 SITE 4 AC2 35 CYS B 198 HIS B 199 GLY B 202 ASN B 203 SITE 5 AC2 35 ALA B 205 THR B 206 ALA B 208 GLY B 209 SITE 6 AC2 35 GLY B 210 GLU B 259 GLY B 260 GLY B 263 SITE 7 AC2 35 ILE B 264 ILE B 265 GLU B 475 HIS B 476 SITE 8 AC2 35 ASN B 512 HOH B 710 HOH B 782 HOH B 803 SITE 9 AC2 35 HOH B 806 HOH B 810 HOH B 884 CRYST1 72.258 94.859 72.740 90.00 113.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013839 0.000000 0.005972 0.00000 SCALE2 0.000000 0.010542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014973 0.00000