HEADER LIGASE 07-FEB-20 6LW8 TITLE STRUCTURAL BASIS FOR DOMAIN ROTATION DURING ADENYLATION OF ACTIVE SITE TITLE 2 K123 AND FRAGMENT LIBRARY SCREENING AGAINST NAD+ -DEPENDENT DNA TITLE 3 LIGASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIGA,POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD(+)]; COMPND 5 EC: 6.5.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: LIGA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.RAMACHANDRAN,M.AFSAR,A.SHUKLA REVDAT 3 29-NOV-23 6LW8 1 REMARK REVDAT 2 25-AUG-21 6LW8 1 JRNL REVDAT 1 10-FEB-21 6LW8 0 JRNL AUTH A.SHUKLA,M.AFSAR,N.KUMAR,S.KUMAR,R.RAMACHANDRAN JRNL TITL STRUCTURE BASED IDENTIFICATION OF FIRST-IN-CLASS FRAGMENT JRNL TITL 2 INHIBITORS THAT TARGET THE NMN POCKET OF M. TUBERCULOSIS NAD JRNL TITL 3 + -DEPENDENT DNA LIGASE A. JRNL REF J.STRUCT.BIOL. V. 213 07655 2021 JRNL REFN ESSN 1095-8657 JRNL PMID 33197566 JRNL DOI 10.1016/J.JSB.2020.107655 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1000 - 4.8002 1.00 2840 132 0.2333 0.2477 REMARK 3 2 4.8002 - 3.8108 1.00 2650 143 0.1975 0.2267 REMARK 3 3 3.8108 - 3.3293 1.00 2602 145 0.2372 0.2521 REMARK 3 4 3.3293 - 3.0250 1.00 2579 144 0.2677 0.3268 REMARK 3 5 3.0250 - 2.8082 1.00 2552 131 0.2882 0.3407 REMARK 3 6 2.8082 - 2.6427 1.00 2571 131 0.2741 0.3216 REMARK 3 7 2.6427 - 2.5103 1.00 2529 135 0.2871 0.3542 REMARK 3 8 2.5103 - 2.4011 1.00 2548 130 0.3059 0.3541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZAU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES NA 0.1M NACL 1.5M AMMONIUM REMARK 280 SULFATE, PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.22767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.45533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.84150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 168.06917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.61383 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.22767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.45533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 168.06917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.84150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.61383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -187.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 47.69500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 82.61016 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 168.06917 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 7 REMARK 465 GLN A 8 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 ASP A 190 CG OD1 OD2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 315 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C VAL A 263 H SER A 264 1.31 REMARK 500 HE21 GLN A 18 O HOH A 602 1.43 REMARK 500 O VAL A 263 H SER A 264 1.58 REMARK 500 O ARG A 88 O GLY A 147 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 151 C GLU A 151 O -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 114 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 LEU A 122 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP A 146 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 76 78.26 -113.98 REMARK 500 GLU A 135 48.89 38.52 REMARK 500 HIS A 236 23.95 -153.71 REMARK 500 PHE A 244 117.19 -167.25 REMARK 500 ASP A 272 171.75 68.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EWO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 DBREF 6LW8 A 1 328 UNP P9WNV1 DNLJ_MYCTU 1 328 SEQADV 6LW8 HIS A 329 UNP P9WNV1 EXPRESSION TAG SEQADV 6LW8 HIS A 330 UNP P9WNV1 EXPRESSION TAG SEQADV 6LW8 HIS A 331 UNP P9WNV1 EXPRESSION TAG SEQADV 6LW8 HIS A 332 UNP P9WNV1 EXPRESSION TAG SEQADV 6LW8 HIS A 333 UNP P9WNV1 EXPRESSION TAG SEQADV 6LW8 HIS A 334 UNP P9WNV1 EXPRESSION TAG SEQRES 1 A 334 MET SER SER PRO ASP ALA ASP GLN THR ALA PRO GLU VAL SEQRES 2 A 334 LEU ARG GLN TRP GLN ALA LEU ALA GLU GLU VAL ARG GLU SEQRES 3 A 334 HIS GLN PHE ARG TYR TYR VAL ARG ASP ALA PRO ILE ILE SEQRES 4 A 334 SER ASP ALA GLU PHE ASP GLU LEU LEU ARG ARG LEU GLU SEQRES 5 A 334 ALA LEU GLU GLU GLN HIS PRO GLU LEU ARG THR PRO ASP SEQRES 6 A 334 SER PRO THR GLN LEU VAL GLY GLY ALA GLY PHE ALA THR SEQRES 7 A 334 ASP PHE GLU PRO VAL ASP HIS LEU GLU ARG MET LEU SER SEQRES 8 A 334 LEU ASP ASN ALA PHE THR ALA ASP GLU LEU ALA ALA TRP SEQRES 9 A 334 ALA GLY ARG ILE HIS ALA GLU VAL GLY ASP ALA ALA HIS SEQRES 10 A 334 TYR LEU CYS GLU LEU LYS ILE ASP GLY VAL ALA LEU SER SEQRES 11 A 334 LEU VAL TYR ARG GLU GLY ARG LEU THR ARG ALA SER THR SEQRES 12 A 334 ARG GLY ASP GLY ARG THR GLY GLU ASP VAL THR LEU ASN SEQRES 13 A 334 ALA ARG THR ILE ALA ASP VAL PRO GLU ARG LEU THR PRO SEQRES 14 A 334 GLY ASP ASP TYR PRO VAL PRO GLU VAL LEU GLU VAL ARG SEQRES 15 A 334 GLY GLU VAL PHE PHE ARG LEU ASP ASP PHE GLN ALA LEU SEQRES 16 A 334 ASN ALA SER LEU VAL GLU GLU GLY LYS ALA PRO PHE ALA SEQRES 17 A 334 ASN PRO ARG ASN SER ALA ALA GLY SER LEU ARG GLN LYS SEQRES 18 A 334 ASP PRO ALA VAL THR ALA ARG ARG ARG LEU ARG MET ILE SEQRES 19 A 334 CYS HIS GLY LEU GLY HIS VAL GLU GLY PHE ARG PRO ALA SEQRES 20 A 334 THR LEU HIS GLN ALA TYR LEU ALA LEU ARG ALA TRP GLY SEQRES 21 A 334 LEU PRO VAL SER GLU HIS THR THR LEU ALA THR ASP LEU SEQRES 22 A 334 ALA GLY VAL ARG GLU ARG ILE ASP TYR TRP GLY GLU HIS SEQRES 23 A 334 ARG HIS GLU VAL ASP HIS GLU ILE ASP GLY VAL VAL VAL SEQRES 24 A 334 LYS VAL ASP GLU VAL ALA LEU GLN ARG ARG LEU GLY SER SEQRES 25 A 334 THR SER ARG ALA PRO ARG TRP ALA ILE ALA TYR LYS TYR SEQRES 26 A 334 PRO PRO GLU HIS HIS HIS HIS HIS HIS HET GOL A 501 14 HET EWO A 502 28 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HETNAM GOL GLYCEROL HETNAM EWO (4R)-4-(4-FLUOROPHENYL)-4,5,6,7-TETRAHYDRO-1H- HETNAM 2 EWO IMIDAZO[4,5-C]PYRIDINE HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 EWO C12 H12 F N3 FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 HOH *23(H2 O) HELIX 1 AA1 ALA A 10 VAL A 33 1 24 HELIX 2 AA2 SER A 40 HIS A 58 1 19 HELIX 3 AA3 PRO A 59 ARG A 62 5 4 HELIX 4 AA4 SER A 66 LEU A 70 5 5 HELIX 5 AA5 THR A 97 ALA A 110 1 14 HELIX 6 AA6 VAL A 153 THR A 159 1 7 HELIX 7 AA7 ARG A 188 GLU A 201 1 14 HELIX 8 AA8 ASN A 209 ARG A 219 1 11 HELIX 9 AA9 ASP A 222 ARG A 228 1 7 HELIX 10 AB1 THR A 248 GLY A 260 1 13 HELIX 11 AB2 THR A 271 ARG A 287 1 17 HELIX 12 AB3 HIS A 288 VAL A 290 5 3 HELIX 13 AB4 ALA A 305 LEU A 310 1 6 SHEET 1 AA1 2 PRO A 82 ASP A 84 0 SHEET 2 AA1 2 THR A 149 GLU A 151 -1 O GLY A 150 N VAL A 83 SHEET 1 AA2 5 ASN A 94 ALA A 95 0 SHEET 2 AA2 5 ALA A 320 LYS A 324 1 O LYS A 324 N ALA A 95 SHEET 3 AA2 5 ILE A 294 VAL A 301 -1 N VAL A 299 O ILE A 321 SHEET 4 AA2 5 TYR A 118 ILE A 124 -1 N GLU A 121 O VAL A 298 SHEET 5 AA2 5 THR A 268 ALA A 270 -1 O ALA A 270 N TYR A 118 SHEET 1 AA3 4 ARG A 137 THR A 143 0 SHEET 2 AA3 4 VAL A 127 ARG A 134 -1 N SER A 130 O SER A 142 SHEET 3 AA3 4 VAL A 178 PHE A 186 -1 O LEU A 179 N TYR A 133 SHEET 4 AA3 4 ARG A 232 GLU A 242 -1 O GLY A 239 N GLU A 180 SITE 1 AC1 1 GLY A 243 SITE 1 AC2 6 HIS A 27 TYR A 31 TYR A 32 PRO A 37 SITE 2 AC2 6 ASP A 41 PHE A 44 SITE 1 AC3 5 LYS A 204 VAL A 225 ARG A 228 ARG A 229 SITE 2 AC3 5 HOH A 615 SITE 1 AC4 4 LYS A 204 PHE A 207 GLN A 220 ARG A 229 SITE 1 AC5 5 GLY A 126 VAL A 127 ALA A 128 ARG A 144 SITE 2 AC5 5 HOH A 607 SITE 1 AC6 5 PRO A 11 ARG A 30 ARG A 34 VAL A 163 SITE 2 AC6 5 GLU A 165 SITE 1 AC7 6 ALA A 98 LEU A 101 ARG A 277 ILE A 280 SITE 2 AC7 6 ASP A 281 TYR A 323 SITE 1 AC8 3 ASN A 94 LYS A 123 LYS A 324 CRYST1 95.390 95.390 201.683 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010483 0.006053 0.000000 0.00000 SCALE2 0.000000 0.012105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004958 0.00000