HEADER HYDROLASE 14-FEB-20 6LYJ TITLE THE CRYSTAL STRUCTURE OF SAUGI/EBVUDG COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDG,UNG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SAUGI; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS (STRAIN GD1); SOURCE 3 ORGANISM_COMMON: HHV-4,HUMAN HERPESVIRUS 4,HUMAN GAMMAHERPESVIRUS 4; SOURCE 4 ORGANISM_TAXID: 10376; SOURCE 5 STRAIN: GD1; SOURCE 6 GENE: BKRF3, EBVAGC1_032, HHV4_BKRF3, SNU-719_036, YCCEL1_037; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 11 ORGANISM_TAXID: 1280; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA MIMIC PROTEIN, URACIL-DNA GLYCOSYLASE INHIBITOR, URACIL-DNA KEYWDS 2 GLYCOSYLASE, DNA REPAIR, HERPESVIRUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.T.LIAO,T.P.KO,H.C.WANG REVDAT 2 29-NOV-23 6LYJ 1 REMARK REVDAT 1 24-JUN-20 6LYJ 0 JRNL AUTH Y.T.LIAO,S.J.LIN,T.P.KO,C.Y.LIU,K.C.HSU,H.C.WANG JRNL TITL STRUCTURAL INSIGHT INTO THE DIFFERENTIAL INTERACTIONS JRNL TITL 2 BETWEEN THE DNA MIMIC PROTEIN SAUGI AND TWO GAMMA JRNL TITL 3 HERPESVIRUS URACIL-DNA GLYCOSYLASES. JRNL REF INT.J.BIOL.MACROMOL. V. 160 903 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 32502608 JRNL DOI 10.1016/J.IJBIOMAC.2020.05.267 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 41630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9500 - 5.0400 1.00 3132 158 0.1569 0.1773 REMARK 3 2 5.0400 - 4.0100 1.00 3013 152 0.1340 0.1574 REMARK 3 3 4.0100 - 3.5100 1.00 2949 149 0.1504 0.2102 REMARK 3 4 3.5100 - 3.1900 1.00 2959 149 0.1629 0.1933 REMARK 3 5 3.1900 - 2.9600 1.00 2912 147 0.1810 0.2310 REMARK 3 6 2.9600 - 2.7900 0.99 2905 146 0.1874 0.2458 REMARK 3 7 2.7900 - 2.6500 0.98 2862 145 0.1947 0.2496 REMARK 3 8 2.6500 - 2.5300 0.98 2857 144 0.1916 0.2696 REMARK 3 9 2.5300 - 2.4300 0.96 2801 142 0.1885 0.2357 REMARK 3 10 2.4300 - 2.3500 0.95 2719 137 0.1860 0.2289 REMARK 3 11 2.3500 - 2.2800 0.93 2715 137 0.2003 0.2290 REMARK 3 12 2.2800 - 2.2100 0.91 2653 133 0.2917 0.3442 REMARK 3 13 2.2100 - 2.1500 0.91 2595 131 0.2066 0.2829 REMARK 3 14 2.1500 - 2.1000 0.87 2559 129 0.1997 0.2613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.219 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.722 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5620 REMARK 3 ANGLE : 0.677 7644 REMARK 3 CHIRALITY : 0.046 841 REMARK 3 PLANARITY : 0.005 975 REMARK 3 DIHEDRAL : 12.277 3333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 7.2645 35.3765 10.7694 REMARK 3 T TENSOR REMARK 3 T11: 0.0582 T22: 0.1522 REMARK 3 T33: 0.1706 T12: 0.0016 REMARK 3 T13: 0.0063 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.7180 L22: 1.1663 REMARK 3 L33: 1.4778 L12: -0.1115 REMARK 3 L13: 0.3120 L23: -0.1789 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0163 S13: -0.1263 REMARK 3 S21: -0.0066 S22: -0.0406 S23: -0.0540 REMARK 3 S31: 0.0226 S32: 0.0739 S33: -0.0293 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 18.6315 82.5099 17.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.1263 REMARK 3 T33: 0.1286 T12: 0.0101 REMARK 3 T13: 0.0316 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.2808 L22: 1.0839 REMARK 3 L33: 1.5164 L12: 0.0871 REMARK 3 L13: 0.0810 L23: 0.1249 REMARK 3 S TENSOR REMARK 3 S11: -0.1111 S12: -0.0851 S13: 0.0223 REMARK 3 S21: -0.1000 S22: 0.0146 S23: 0.0319 REMARK 3 S31: 0.1509 S32: -0.0315 S33: 0.0294 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -10.7366 41.8981 28.4957 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1879 REMARK 3 T33: 0.1632 T12: 0.0108 REMARK 3 T13: -0.0045 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.9827 L22: 1.2153 REMARK 3 L33: 1.3791 L12: 0.3757 REMARK 3 L13: 0.0104 L23: 0.3444 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.1901 S13: -0.0546 REMARK 3 S21: 0.1245 S22: -0.0159 S23: -0.0352 REMARK 3 S31: -0.1454 S32: -0.0672 S33: 0.0171 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): 31.8221 66.8687 33.6882 REMARK 3 T TENSOR REMARK 3 T11: 0.3914 T22: 0.2159 REMARK 3 T33: 0.2351 T12: 0.0537 REMARK 3 T13: -0.0249 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.9305 L22: 1.8093 REMARK 3 L33: 1.4157 L12: 0.1261 REMARK 3 L13: 0.4142 L23: -0.2038 REMARK 3 S TENSOR REMARK 3 S11: 0.2238 S12: -0.0581 S13: -0.2284 REMARK 3 S21: 0.1329 S22: -0.1077 S23: -0.1880 REMARK 3 S31: 0.1243 S32: 0.0701 S33: -0.0040 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 109) REMARK 3 SELECTION : CHAIN 'D' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5AYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRISHCL, PEG 6000, EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.74000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.47150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.74800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.47150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.74000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.74800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 TRP A 9 REMARK 465 LEU A 10 REMARK 465 ASP A 11 REMARK 465 GLU A 12 REMARK 465 HIS A 13 REMARK 465 VAL A 14 REMARK 465 TRP A 15 REMARK 465 LYS A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 GLU A 20 REMARK 465 ILE A 21 REMARK 465 GLY A 22 REMARK 465 VAL A 23 REMARK 465 LYS A 24 REMARK 465 GLY A 25 REMARK 465 GLU A 26 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 LEU B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 TRP B 9 REMARK 465 LEU B 10 REMARK 465 ASP B 11 REMARK 465 GLU B 12 REMARK 465 HIS B 13 REMARK 465 VAL B 14 REMARK 465 TRP B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 LYS B 18 REMARK 465 GLN B 19 REMARK 465 GLU B 20 REMARK 465 ILE B 21 REMARK 465 GLY B 22 REMARK 465 VAL B 23 REMARK 465 LYS B 24 REMARK 465 GLY B 25 REMARK 465 GLU B 26 REMARK 465 GLY D 110 REMARK 465 GLY D 111 REMARK 465 GLN D 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 39 O HOH C 201 2.13 REMARK 500 O HOH C 278 O HOH C 310 2.15 REMARK 500 OE1 GLN A 227 O HOH A 301 2.17 REMARK 500 O HOH C 202 O HOH C 288 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET D 99 CG - SD - CE ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 29 -10.46 66.57 REMARK 500 GLN A 90 -94.17 -96.77 REMARK 500 PHE A 103 -32.69 68.19 REMARK 500 SER A 221 -116.99 -147.17 REMARK 500 LYS A 224 -42.81 -145.90 REMARK 500 SER A 225 108.90 -40.75 REMARK 500 LEU B 29 -14.11 68.61 REMARK 500 GLN B 90 -95.95 -98.94 REMARK 500 PHE B 103 -30.44 69.83 REMARK 500 GLN B 219 -70.86 -69.41 REMARK 500 SER B 221 -108.64 -144.94 REMARK 500 LYS B 224 -36.81 -151.14 REMARK 500 SER B 225 112.28 -39.28 REMARK 500 ALA C 45 -107.03 -125.27 REMARK 500 GLN C 74 -122.26 55.11 REMARK 500 THR C 97 -16.83 78.51 REMARK 500 ALA D 45 -107.99 -125.63 REMARK 500 GLN D 74 -124.87 58.76 REMARK 500 THR D 97 -16.91 77.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 605 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 606 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 607 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 608 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH B 550 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 551 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 552 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 553 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 554 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH B 555 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH B 556 DISTANCE = 9.76 ANGSTROMS REMARK 525 HOH B 557 DISTANCE = 9.85 ANGSTROMS REMARK 525 HOH C 319 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH C 320 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH C 321 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH D 272 DISTANCE = 6.50 ANGSTROMS DBREF 6LYJ A 1 255 UNP Q3KSS2 Q3KSS2_EBVG 1 255 DBREF 6LYJ B 1 255 UNP Q3KSS2 Q3KSS2_EBVG 1 255 DBREF 6LYJ C 1 112 UNP Q936H5 Q936H5_STAAU 1 112 DBREF 6LYJ D 1 112 UNP Q936H5 Q936H5_STAAU 1 112 SEQRES 1 A 255 MET ALA SER ARG GLY LEU ASP LEU TRP LEU ASP GLU HIS SEQRES 2 A 255 VAL TRP LYS ARG LYS GLN GLU ILE GLY VAL LYS GLY GLU SEQRES 3 A 255 ASN LEU LEU LEU PRO ASP LEU TRP LEU ASP PHE LEU GLN SEQRES 4 A 255 LEU SER PRO ILE PHE GLN ARG LYS LEU ALA ALA VAL ILE SEQRES 5 A 255 ALA CYS VAL ARG ARG LEU ARG THR GLN ALA THR VAL TYR SEQRES 6 A 255 PRO GLU GLU ASP MET CYS MET ALA TRP ALA ARG PHE CYS SEQRES 7 A 255 ASP PRO SER ASP ILE LYS VAL VAL ILE LEU GLY GLN ASP SEQRES 8 A 255 PRO TYR HIS GLY GLY GLN ALA ASN GLY LEU ALA PHE SER SEQRES 9 A 255 VAL ALA TYR GLY PHE PRO VAL PRO PRO SER LEU ARG ASN SEQRES 10 A 255 ILE TYR ALA GLU LEU HIS ARG SER LEU PRO GLU PHE SER SEQRES 11 A 255 PRO PRO ASP HIS GLY CYS LEU ASP ALA TRP ALA SER GLN SEQRES 12 A 255 GLY VAL LEU LEU LEU ASN THR ILE LEU THR VAL GLN LYS SEQRES 13 A 255 GLY LYS PRO GLY SER HIS ALA ASP ILE GLY TRP ALA TRP SEQRES 14 A 255 PHE THR ASP HIS VAL ILE SER LEU LEU SER GLU ARG LEU SEQRES 15 A 255 LYS ALA CYS VAL PHE MET LEU TRP GLY ALA LYS ALA GLY SEQRES 16 A 255 ASP LYS ALA SER LEU ILE ASN SER LYS LYS HIS LEU VAL SEQRES 17 A 255 LEU THR SER GLN HIS PRO SER PRO LEU ALA GLN ASN SER SEQRES 18 A 255 THR ARG LYS SER ALA GLN GLN LYS PHE LEU GLY ASN ASN SEQRES 19 A 255 HIS PHE VAL LEU ALA ASN ASN PHE LEU ARG GLU LYS GLY SEQRES 20 A 255 LEU GLY GLU ILE ASP TRP ARG LEU SEQRES 1 B 255 MET ALA SER ARG GLY LEU ASP LEU TRP LEU ASP GLU HIS SEQRES 2 B 255 VAL TRP LYS ARG LYS GLN GLU ILE GLY VAL LYS GLY GLU SEQRES 3 B 255 ASN LEU LEU LEU PRO ASP LEU TRP LEU ASP PHE LEU GLN SEQRES 4 B 255 LEU SER PRO ILE PHE GLN ARG LYS LEU ALA ALA VAL ILE SEQRES 5 B 255 ALA CYS VAL ARG ARG LEU ARG THR GLN ALA THR VAL TYR SEQRES 6 B 255 PRO GLU GLU ASP MET CYS MET ALA TRP ALA ARG PHE CYS SEQRES 7 B 255 ASP PRO SER ASP ILE LYS VAL VAL ILE LEU GLY GLN ASP SEQRES 8 B 255 PRO TYR HIS GLY GLY GLN ALA ASN GLY LEU ALA PHE SER SEQRES 9 B 255 VAL ALA TYR GLY PHE PRO VAL PRO PRO SER LEU ARG ASN SEQRES 10 B 255 ILE TYR ALA GLU LEU HIS ARG SER LEU PRO GLU PHE SER SEQRES 11 B 255 PRO PRO ASP HIS GLY CYS LEU ASP ALA TRP ALA SER GLN SEQRES 12 B 255 GLY VAL LEU LEU LEU ASN THR ILE LEU THR VAL GLN LYS SEQRES 13 B 255 GLY LYS PRO GLY SER HIS ALA ASP ILE GLY TRP ALA TRP SEQRES 14 B 255 PHE THR ASP HIS VAL ILE SER LEU LEU SER GLU ARG LEU SEQRES 15 B 255 LYS ALA CYS VAL PHE MET LEU TRP GLY ALA LYS ALA GLY SEQRES 16 B 255 ASP LYS ALA SER LEU ILE ASN SER LYS LYS HIS LEU VAL SEQRES 17 B 255 LEU THR SER GLN HIS PRO SER PRO LEU ALA GLN ASN SER SEQRES 18 B 255 THR ARG LYS SER ALA GLN GLN LYS PHE LEU GLY ASN ASN SEQRES 19 B 255 HIS PHE VAL LEU ALA ASN ASN PHE LEU ARG GLU LYS GLY SEQRES 20 B 255 LEU GLY GLU ILE ASP TRP ARG LEU SEQRES 1 C 112 MET THR LEU GLU LEU GLN LEU LYS HIS TYR ILE THR ASN SEQRES 2 C 112 LEU PHE ASN LEU PRO LYS ASP GLU LYS TRP GLU CYS GLU SEQRES 3 C 112 SER ILE GLU GLU ILE ALA ASP ASP ILE LEU PRO ASP GLN SEQRES 4 C 112 TYR VAL ARG LEU GLY ALA LEU SER ASN LYS ILE LEU GLN SEQRES 5 C 112 THR TYR THR TYR TYR SER ASP THR LEU HIS GLU SER ASN SEQRES 6 C 112 ILE TYR PRO PHE ILE LEU TYR TYR GLN LYS GLN LEU ILE SEQRES 7 C 112 ALA ILE GLY TYR ILE ASP GLU ASN HIS ASP MET ASP PHE SEQRES 8 C 112 LEU TYR LEU HIS ASN THR ILE MET PRO LEU LEU ASP GLN SEQRES 9 C 112 ARG TYR LEU LEU THR GLY GLY GLN SEQRES 1 D 112 MET THR LEU GLU LEU GLN LEU LYS HIS TYR ILE THR ASN SEQRES 2 D 112 LEU PHE ASN LEU PRO LYS ASP GLU LYS TRP GLU CYS GLU SEQRES 3 D 112 SER ILE GLU GLU ILE ALA ASP ASP ILE LEU PRO ASP GLN SEQRES 4 D 112 TYR VAL ARG LEU GLY ALA LEU SER ASN LYS ILE LEU GLN SEQRES 5 D 112 THR TYR THR TYR TYR SER ASP THR LEU HIS GLU SER ASN SEQRES 6 D 112 ILE TYR PRO PHE ILE LEU TYR TYR GLN LYS GLN LEU ILE SEQRES 7 D 112 ALA ILE GLY TYR ILE ASP GLU ASN HIS ASP MET ASP PHE SEQRES 8 D 112 LEU TYR LEU HIS ASN THR ILE MET PRO LEU LEU ASP GLN SEQRES 9 D 112 ARG TYR LEU LEU THR GLY GLY GLN FORMUL 5 HOH *758(H2 O) HELIX 1 AA1 PRO A 31 GLN A 39 1 9 HELIX 2 AA2 SER A 41 THR A 60 1 20 HELIX 3 AA3 GLU A 67 CYS A 71 5 5 HELIX 4 AA4 MET A 72 ARG A 76 5 5 HELIX 5 AA5 ASP A 79 ILE A 83 5 5 HELIX 6 AA6 PRO A 112 LEU A 126 1 15 HELIX 7 AA7 LEU A 137 GLN A 143 1 7 HELIX 8 AA8 GLY A 166 LEU A 182 1 17 HELIX 9 AA9 GLY A 191 ASP A 196 1 6 HELIX 10 AB1 LYS A 197 ILE A 201 5 5 HELIX 11 AB2 SER A 215 GLN A 219 5 5 HELIX 12 AB3 ASN A 234 LYS A 246 1 13 HELIX 13 AB4 PRO B 31 GLN B 39 1 9 HELIX 14 AB5 SER B 41 THR B 60 1 20 HELIX 15 AB6 GLU B 67 CYS B 71 5 5 HELIX 16 AB7 MET B 72 ARG B 76 5 5 HELIX 17 AB8 ASP B 79 ILE B 83 5 5 HELIX 18 AB9 PRO B 112 LEU B 126 1 15 HELIX 19 AC1 LEU B 137 GLN B 143 1 7 HELIX 20 AC2 GLY B 166 LEU B 182 1 17 HELIX 21 AC3 GLY B 191 ASP B 196 1 6 HELIX 22 AC4 LYS B 197 ILE B 201 5 5 HELIX 23 AC5 SER B 215 GLN B 219 5 5 HELIX 24 AC6 ASN B 234 LYS B 246 1 13 HELIX 25 AC7 THR C 2 PHE C 15 1 14 HELIX 26 AC8 ALA C 32 LEU C 36 1 5 HELIX 27 AC9 PRO C 37 VAL C 41 5 5 HELIX 28 AD1 SER C 58 ASN C 65 1 8 HELIX 29 AD2 ARG C 105 LEU C 108 5 4 HELIX 30 AD3 THR D 2 ASN D 16 1 15 HELIX 31 AD4 ASP D 33 ILE D 35 5 3 HELIX 32 AD5 PRO D 37 VAL D 41 5 5 HELIX 33 AD6 SER D 58 ASN D 65 1 8 HELIX 34 AD7 ARG D 105 LEU D 108 5 4 SHEET 1 AA1 2 VAL A 64 TYR A 65 0 SHEET 2 AA1 2 VAL A 154 GLN A 155 -1 O VAL A 154 N TYR A 65 SHEET 1 AA2 4 VAL A 145 ASN A 149 0 SHEET 2 AA2 4 VAL A 85 GLY A 89 1 N VAL A 85 O LEU A 146 SHEET 3 AA2 4 VAL A 186 TRP A 190 1 O MET A 188 N VAL A 86 SHEET 4 AA2 4 LEU A 207 SER A 211 1 O LEU A 209 N LEU A 189 SHEET 1 AA3 2 VAL B 64 TYR B 65 0 SHEET 2 AA3 2 VAL B 154 GLN B 155 -1 O VAL B 154 N TYR B 65 SHEET 1 AA4 4 VAL B 145 ASN B 149 0 SHEET 2 AA4 4 VAL B 85 GLY B 89 1 N VAL B 85 O LEU B 146 SHEET 3 AA4 4 VAL B 186 TRP B 190 1 O MET B 188 N VAL B 86 SHEET 4 AA4 4 LEU B 207 SER B 211 1 O LEU B 209 N PHE B 187 SHEET 1 AA5 3 GLU C 24 GLU C 26 0 SHEET 2 AA5 3 ILE C 50 TYR C 57 -1 O TYR C 57 N GLU C 24 SHEET 3 AA5 3 GLU C 29 ILE C 31 -1 N GLU C 30 O LEU C 51 SHEET 1 AA6 6 GLU C 24 GLU C 26 0 SHEET 2 AA6 6 ILE C 50 TYR C 57 -1 O TYR C 57 N GLU C 24 SHEET 3 AA6 6 TYR C 67 TYR C 73 -1 O TYR C 72 N GLN C 52 SHEET 4 AA6 6 GLN C 76 ILE C 83 -1 O ILE C 78 N LEU C 71 SHEET 5 AA6 6 MET C 89 HIS C 95 -1 O LEU C 92 N ILE C 80 SHEET 6 AA6 6 PRO C 100 ASP C 103 -1 O LEU C 101 N LEU C 94 SHEET 1 AA7 6 GLU D 24 ILE D 31 0 SHEET 2 AA7 6 ILE D 50 TYR D 57 -1 O LEU D 51 N GLU D 30 SHEET 3 AA7 6 TYR D 67 TYR D 73 -1 O TYR D 72 N GLN D 52 SHEET 4 AA7 6 GLN D 76 ILE D 83 -1 O ILE D 78 N LEU D 71 SHEET 5 AA7 6 MET D 89 HIS D 95 -1 O LEU D 92 N ILE D 80 SHEET 6 AA7 6 PRO D 100 ASP D 103 -1 O LEU D 102 N LEU D 94 CISPEP 1 TYR A 65 PRO A 66 0 -8.98 CISPEP 2 TYR B 65 PRO B 66 0 -7.64 CRYST1 49.480 93.496 156.943 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006372 0.00000