HEADER FLUORESCENT PROTEIN 17-FEB-20 6LZ2 TITLE CRYSTAL STRUCTURE OF A THERMOSTABLE GREEN FLUORESCENT PROTEIN (TGP) TITLE 2 WITH A SYNTHETIC NANOBODY (SB44) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOSTABLE GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THIS IS A GREEN FLUORESCENT PROTEIN. GLN63 TYR64 GLY65 COMPND 6 IN THE ORIGINAL SEQUENCE FORMS THE FLUOROPHORE CRQ.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SYNTHETIC NANOBODY (SYBODY) 44 AGAINST THE THERMOSTABLE COMPND 9 GREEN FLUORESCENT PROTEIN (TGP); COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALAXEA FASCICULARIS; SOURCE 3 ORGANISM_TAXID: 46745; SOURCE 4 GENE: GREEN FLUORESCENT GFP-LIKE PROTEIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEC; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PEC KEYWDS COMPLEX, GFP, NANOBODY, SINGLE-CHAIN ANTIBODY, SYBODY, SYNTHETIC KEYWDS 2 ANTIBODY, TGP, THERMOSTABLE GREEN FLUORESCENT PROTEIN, FLUORESCENT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.CAI,H.YAO,T.LI,C.HUTTER,Y.TANG,Y.LI,M.SEEGER,D.LI REVDAT 4 13-NOV-24 6LZ2 1 REMARK REVDAT 3 29-NOV-23 6LZ2 1 REMARK REVDAT 2 15-NOV-23 6LZ2 1 LINK ATOM REVDAT 1 23-DEC-20 6LZ2 0 JRNL AUTH H.CAI,H.YAO,T.LI,C.A.J.HUTTER,Y.LI,Y.TANG,M.A.SEEGER,D.LI JRNL TITL AN IMPROVED FLUORESCENT TAG AND ITS NANOBODIES FOR MEMBRANE JRNL TITL 2 PROTEIN EXPRESSION, STABILITY ASSAY, AND PURIFICATION. JRNL REF COMMUN BIOL V. 3 753 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 33303987 JRNL DOI 10.1038/S42003-020-01478-Z REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 51766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0400 - 4.9000 0.99 3807 152 0.1608 0.1631 REMARK 3 2 4.9000 - 3.8900 1.00 3674 147 0.1297 0.1793 REMARK 3 3 3.8900 - 3.4000 1.00 3619 145 0.1565 0.2010 REMARK 3 4 3.4000 - 3.0900 1.00 3578 143 0.1755 0.1919 REMARK 3 5 3.0900 - 2.8700 1.00 3568 143 0.1986 0.2638 REMARK 3 6 2.8700 - 2.7000 1.00 3589 143 0.1981 0.2500 REMARK 3 7 2.7000 - 2.5600 1.00 3537 141 0.1925 0.2651 REMARK 3 8 2.5600 - 2.4500 1.00 3532 142 0.2071 0.2827 REMARK 3 9 2.4500 - 2.3600 1.00 3570 143 0.1987 0.2333 REMARK 3 10 2.3600 - 2.2800 1.00 3520 141 0.1963 0.2342 REMARK 3 11 2.2800 - 2.2100 1.00 3541 142 0.2092 0.2693 REMARK 3 12 2.2100 - 2.1400 1.00 3505 140 0.2137 0.2810 REMARK 3 13 2.1400 - 2.0900 1.00 3520 141 0.2312 0.2932 REMARK 3 14 2.0900 - 2.0300 0.91 3216 127 0.2726 0.3147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.235 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5663 REMARK 3 ANGLE : 0.930 7672 REMARK 3 CHIRALITY : 0.057 785 REMARK 3 PLANARITY : 0.005 1002 REMARK 3 DIHEDRAL : 16.953 824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52046 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 49.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 1.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TZA, 5M13 REMARK 200 REMARK 200 REMARK: 0.2-MM PLATE CLUSTERS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 25 %(W/V) REMARK 280 POLYETHYLENE GLYCOL 3350, 0.1M BIS-TRIS PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.28100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.74300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.28100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.74300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 220 REMARK 465 GLY A 221 REMARK 465 GLY A 222 REMARK 465 SER A 223 REMARK 465 GLY A 224 REMARK 465 GLY A 225 REMARK 465 GLY A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 ARG B 117 REMARK 465 ALA B 118 REMARK 465 GLY B 119 REMARK 465 GLU B 120 REMARK 465 GLN B 121 REMARK 465 LYS B 122 REMARK 465 LEU B 123 REMARK 465 ILE B 124 REMARK 465 SER B 125 REMARK 465 GLU B 126 REMARK 465 GLU B 127 REMARK 465 ASP B 128 REMARK 465 LEU B 129 REMARK 465 ASN B 130 REMARK 465 SER B 131 REMARK 465 ALA B 132 REMARK 465 VAL B 133 REMARK 465 ASP B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 MET C 1 REMARK 465 GLY C 222 REMARK 465 SER C 223 REMARK 465 GLY C 224 REMARK 465 GLY C 225 REMARK 465 GLY C 226 REMARK 465 HIS C 227 REMARK 465 HIS C 228 REMARK 465 HIS C 229 REMARK 465 HIS C 230 REMARK 465 HIS C 231 REMARK 465 HIS C 232 REMARK 465 HIS C 233 REMARK 465 HIS C 234 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 GLN D 1 REMARK 465 GLN D 121 REMARK 465 LYS D 122 REMARK 465 LEU D 123 REMARK 465 ILE D 124 REMARK 465 SER D 125 REMARK 465 GLU D 126 REMARK 465 GLU D 127 REMARK 465 ASP D 128 REMARK 465 LEU D 129 REMARK 465 ASN D 130 REMARK 465 SER D 131 REMARK 465 ALA D 132 REMARK 465 VAL D 133 REMARK 465 ASP D 134 REMARK 465 HIS D 135 REMARK 465 HIS D 136 REMARK 465 HIS D 137 REMARK 465 HIS D 138 REMARK 465 HIS D 139 REMARK 465 HIS D 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 41 -106.84 -31.29 REMARK 500 ALA B 92 169.84 178.04 REMARK 500 SER B 99 -161.63 56.39 REMARK 500 SER B 99 -161.78 56.60 REMARK 500 ASP C 113 32.61 -95.86 REMARK 500 ASN D 77 62.18 33.04 REMARK 500 ALA D 92 167.47 176.53 REMARK 500 SER D 99 -156.58 57.14 REMARK 500 SER D 99 -156.74 57.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 LEU A 138 O 112.7 REMARK 620 3 HOH A 457 O 123.1 100.7 REMARK 620 4 HOH A 491 O 106.7 94.5 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 THR A 59 OG1 117.1 REMARK 620 3 HOH A 459 O 101.1 124.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE C 62 and CRQ C REMARK 800 63 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CRQ C 63 and ASN C REMARK 800 66 DBREF 6LZ2 A 1 234 PDB 6LZ2 6LZ2 1 234 DBREF 6LZ2 B -3 140 PDB 6LZ2 6LZ2 -3 140 DBREF 6LZ2 C 1 234 PDB 6LZ2 6LZ2 1 234 DBREF 6LZ2 D -3 140 PDB 6LZ2 6LZ2 -3 140 SEQRES 1 A 232 MET ALA SER VAL ILE LYS PRO GLU MET LYS ILE LYS LEU SEQRES 2 A 232 ARG MET GLU GLY ALA VAL ASN GLY HIS LYS PHE VAL ILE SEQRES 3 A 232 GLU GLY GLU GLY ILE GLY LYS PRO TYR GLU GLY THR GLN SEQRES 4 A 232 THR LEU ASP LEU THR VAL GLU GLU GLY ALA PRO LEU PRO SEQRES 5 A 232 PHE SER TYR ASP ILE LEU THR PRO ALA PHE CRQ ASN ARG SEQRES 6 A 232 ALA PHE THR LYS TYR PRO GLU ASP ILE PRO ASP TYR PHE SEQRES 7 A 232 LYS GLN ALA PHE PRO GLU GLY TYR SER TRP GLU ARG SER SEQRES 8 A 232 MET THR TYR GLU ASP GLN GLY ILE CYS ILE ALA THR SER SEQRES 9 A 232 ASP ILE THR MET GLU GLY ASP CYS PHE PHE TYR GLU ILE SEQRES 10 A 232 ARG PHE ASP GLY THR ASN PHE PRO PRO ASN GLY PRO VAL SEQRES 11 A 232 MET GLN LYS LYS THR LEU LYS TRP GLU PRO SER THR GLU SEQRES 12 A 232 LYS MET TYR VAL GLU ASP GLY VAL LEU LYS GLY ASP VAL SEQRES 13 A 232 GLU MET ALA LEU LEU LEU GLU GLY GLY GLY HIS TYR ARG SEQRES 14 A 232 CYS ASP PHE LYS THR THR TYR LYS ALA LYS LYS ASP VAL SEQRES 15 A 232 ARG LEU PRO ASP ALA HIS GLU VAL ASP HIS ARG ILE GLU SEQRES 16 A 232 ILE LEU SER HIS ASP LYS ASP TYR ASN LYS VAL ARG LEU SEQRES 17 A 232 TYR GLU HIS ALA GLU ALA ARG TYR SER GLY GLY GLY SER SEQRES 18 A 232 GLY GLY GLY HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 144 GLY SER SER SER GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 B 144 GLY LEU VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 B 144 ALA ALA SER GLY PHE PRO VAL GLY ARG ALA SER MET TRP SEQRES 4 B 144 TRP TYR ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL SEQRES 5 B 144 ALA ALA ILE SER SER TYR GLY TRP VAL THR ALA TYR ALA SEQRES 6 B 144 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 B 144 ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS SEQRES 8 B 144 PRO GLU ASP THR ALA VAL TYR TYR CYS GLU VAL SER VAL SEQRES 9 B 144 GLY THR GLY TYR ARG GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 B 144 SER ALA GLY ARG ALA GLY GLU GLN LYS LEU ILE SER GLU SEQRES 11 B 144 GLU ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS HIS SEQRES 12 B 144 HIS SEQRES 1 C 232 MET ALA SER VAL ILE LYS PRO GLU MET LYS ILE LYS LEU SEQRES 2 C 232 ARG MET GLU GLY ALA VAL ASN GLY HIS LYS PHE VAL ILE SEQRES 3 C 232 GLU GLY GLU GLY ILE GLY LYS PRO TYR GLU GLY THR GLN SEQRES 4 C 232 THR LEU ASP LEU THR VAL GLU GLU GLY ALA PRO LEU PRO SEQRES 5 C 232 PHE SER TYR ASP ILE LEU THR PRO ALA PHE CRQ ASN ARG SEQRES 6 C 232 ALA PHE THR LYS TYR PRO GLU ASP ILE PRO ASP TYR PHE SEQRES 7 C 232 LYS GLN ALA PHE PRO GLU GLY TYR SER TRP GLU ARG SER SEQRES 8 C 232 MET THR TYR GLU ASP GLN GLY ILE CYS ILE ALA THR SER SEQRES 9 C 232 ASP ILE THR MET GLU GLY ASP CYS PHE PHE TYR GLU ILE SEQRES 10 C 232 ARG PHE ASP GLY THR ASN PHE PRO PRO ASN GLY PRO VAL SEQRES 11 C 232 MET GLN LYS LYS THR LEU LYS TRP GLU PRO SER THR GLU SEQRES 12 C 232 LYS MET TYR VAL GLU ASP GLY VAL LEU LYS GLY ASP VAL SEQRES 13 C 232 GLU MET ALA LEU LEU LEU GLU GLY GLY GLY HIS TYR ARG SEQRES 14 C 232 CYS ASP PHE LYS THR THR TYR LYS ALA LYS LYS ASP VAL SEQRES 15 C 232 ARG LEU PRO ASP ALA HIS GLU VAL ASP HIS ARG ILE GLU SEQRES 16 C 232 ILE LEU SER HIS ASP LYS ASP TYR ASN LYS VAL ARG LEU SEQRES 17 C 232 TYR GLU HIS ALA GLU ALA ARG TYR SER GLY GLY GLY SER SEQRES 18 C 232 GLY GLY GLY HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 D 144 GLY SER SER SER GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 D 144 GLY LEU VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 D 144 ALA ALA SER GLY PHE PRO VAL GLY ARG ALA SER MET TRP SEQRES 4 D 144 TRP TYR ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL SEQRES 5 D 144 ALA ALA ILE SER SER TYR GLY TRP VAL THR ALA TYR ALA SEQRES 6 D 144 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 D 144 ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS SEQRES 8 D 144 PRO GLU ASP THR ALA VAL TYR TYR CYS GLU VAL SER VAL SEQRES 9 D 144 GLY THR GLY TYR ARG GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 D 144 SER ALA GLY ARG ALA GLY GLU GLN LYS LEU ILE SER GLU SEQRES 11 D 144 GLU ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS HIS SEQRES 12 D 144 HIS HET CRQ A 63 24 HET CRQ C 63 24 HET NA A 301 1 HET NA A 302 1 HET ACT B 301 4 HET ACT C 401 4 HET GOL C 402 6 HET TRS C 403 8 HET GOL C 404 6 HET ACT D 201 4 HET ACT D 202 4 HETNAM CRQ [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY- HETNAM 2 CRQ BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC HETNAM 3 CRQ ACID HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN CRQ CHROMOPHORE (GLN-TYR-GLY) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 1 CRQ 2(C16 H16 N4 O5) FORMUL 5 NA 2(NA 1+) FORMUL 7 ACT 4(C2 H3 O2 1-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 14 HOH *469(H2 O) HELIX 1 AA1 SER A 54 PHE A 62 5 9 HELIX 2 AA2 ASP A 78 ALA A 83 1 6 HELIX 3 AA3 LYS B 87 THR B 91 5 5 HELIX 4 AA4 SER C 54 PHE C 62 5 9 HELIX 5 AA5 ASP C 78 ALA C 83 1 6 HELIX 6 AA6 LYS D 87 THR D 91 5 5 SHEET 1 AA113 THR A 137 TRP A 140 0 SHEET 2 AA113 VAL A 153 LEU A 164 -1 O LEU A 163 N LEU A 138 SHEET 3 AA113 HIS A 169 ALA A 180 -1 O CYS A 172 N MET A 160 SHEET 4 AA113 TYR A 88 TYR A 96 -1 N SER A 89 O LYS A 179 SHEET 5 AA113 ILE A 101 GLU A 111 -1 O CYS A 102 N MET A 94 SHEET 6 AA113 CYS A 114 THR A 124 -1 O ARG A 120 N THR A 105 SHEET 7 AA113 MET A 9 VAL A 19 1 N LYS A 10 O PHE A 115 SHEET 8 AA113 HIS A 22 LYS A 33 -1 O ILE A 26 N MET A 15 SHEET 9 AA113 THR A 38 GLU A 47 -1 O ASP A 42 N GLU A 29 SHEET 10 AA113 LYS A 207 ARG A 217 -1 O VAL A 208 N LEU A 43 SHEET 11 AA113 HIS A 190 HIS A 201 -1 N GLU A 191 O ARG A 217 SHEET 12 AA113 SER A 143 GLU A 150 -1 N GLU A 145 O VAL A 192 SHEET 13 AA113 VAL A 153 LEU A 164 -1 O ASP A 157 N LYS A 146 SHEET 1 AA2 4 GLN B 3 SER B 7 0 SHEET 2 AA2 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA2 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA2 4 PHE B 68 ARG B 72 -1 N THR B 69 O GLN B 82 SHEET 1 AA3 6 GLY B 10 GLN B 13 0 SHEET 2 AA3 6 THR B 109 SER B 114 1 O SER B 114 N VAL B 12 SHEET 3 AA3 6 ALA B 92 VAL B 98 -1 N TYR B 94 O THR B 109 SHEET 4 AA3 6 MET B 34 GLN B 39 -1 N TYR B 37 O TYR B 95 SHEET 5 AA3 6 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 AA3 6 THR B 58 TYR B 60 -1 O ALA B 59 N ALA B 50 SHEET 1 AA413 THR C 137 TRP C 140 0 SHEET 2 AA413 VAL C 153 LEU C 164 -1 O LEU C 163 N LEU C 138 SHEET 3 AA413 HIS C 169 ALA C 180 -1 O TYR C 178 N LEU C 154 SHEET 4 AA413 TYR C 88 TYR C 96 -1 N SER C 89 O LYS C 179 SHEET 5 AA413 ILE C 101 GLU C 111 -1 O ILE C 108 N TYR C 88 SHEET 6 AA413 CYS C 114 THR C 124 -1 O ASP C 122 N ILE C 103 SHEET 7 AA413 MET C 9 VAL C 19 1 N LYS C 10 O PHE C 115 SHEET 8 AA413 HIS C 22 LYS C 33 -1 O ILE C 26 N MET C 15 SHEET 9 AA413 THR C 38 GLU C 47 -1 O THR C 44 N GLU C 27 SHEET 10 AA413 LYS C 207 ARG C 217 -1 O VAL C 208 N LEU C 43 SHEET 11 AA413 HIS C 190 HIS C 201 -1 N GLU C 197 O TYR C 211 SHEET 12 AA413 SER C 143 GLU C 150 -1 N MET C 147 O HIS C 190 SHEET 13 AA413 VAL C 153 LEU C 164 -1 O ASP C 157 N LYS C 146 SHEET 1 AA5 4 GLN D 3 SER D 7 0 SHEET 2 AA5 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AA5 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AA5 4 PHE D 68 ASP D 73 -1 N THR D 69 O GLN D 82 SHEET 1 AA6 6 LEU D 11 ALA D 14 0 SHEET 2 AA6 6 THR D 109 ARG D 117 1 O SER D 114 N VAL D 12 SHEET 3 AA6 6 ALA D 92 VAL D 98 -1 N TYR D 94 O THR D 109 SHEET 4 AA6 6 MET D 34 GLN D 39 -1 N TYR D 37 O TYR D 95 SHEET 5 AA6 6 GLU D 46 ILE D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 AA6 6 THR D 58 TYR D 60 -1 O ALA D 59 N ALA D 50 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.01 SSBOND 2 CYS D 22 CYS D 96 1555 1555 1.98 LINK C PHE A 62 N1 CRQ A 63 1555 1555 1.33 LINK C3 CRQ A 63 N ASN A 66 1555 1555 1.33 LINK C PHE C 62 N1 CRQ C 63 1555 1555 1.33 LINK C3 CRQ C 63 N ASN C 66 1555 1555 1.32 LINK OD1 ASP A 56 NA NA A 301 1555 1555 2.75 LINK OD1 ASP A 56 NA NA A 302 1555 1555 2.72 LINK OG1 THR A 59 NA NA A 302 1555 1555 2.94 LINK O LEU A 138 NA NA A 301 1555 1555 2.71 LINK NA NA A 301 O HOH A 457 1555 1555 2.81 LINK NA NA A 301 O HOH A 491 1555 1555 2.81 LINK NA NA A 302 O HOH A 459 1555 1555 2.94 CISPEP 1 ALA A 49 PRO A 50 0 -4.74 CISPEP 2 PHE A 84 PRO A 85 0 14.33 CISPEP 3 ALA C 49 PRO C 50 0 -7.17 CISPEP 4 PHE C 84 PRO C 85 0 11.46 SITE 1 AC1 4 ASP A 56 LEU A 138 HOH A 457 HOH A 491 SITE 1 AC2 4 ASP A 56 THR A 59 TRP A 140 HOH A 459 SITE 1 AC3 4 PRO C 127 PRO C 128 ASN C 129 GLY C 130 SITE 1 AC4 7 ARG C 185 LEU C 186 HOH C 574 HOH C 584 SITE 2 AC4 7 LEU D 18 ARG D 19 GLN D 82 SITE 1 AC5 6 PRO C 142 SER C 143 ASP C 193 HIS C 194 SITE 2 AC5 6 ARG C 195 HIS C 213 SITE 1 AC6 5 SER C 200 HIS C 201 LYS C 207 ARG C 209 SITE 2 AC6 5 HOH C 549 SITE 1 AC7 7 ASP D 62 SER D 63 VAL D 64 LYS D 65 SITE 2 AC7 7 ARG D 67 LYS D 87 HOH D 328 SITE 1 AC8 1 HOH D 330 SITE 1 AC9 27 LEU C 13 MET C 15 ILE C 26 GLN C 39 SITE 2 AC9 27 LEU C 41 LEU C 58 THR C 59 PRO C 60 SITE 3 AC9 27 ALA C 61 ASN C 66 ARG C 67 TRP C 90 SITE 4 AC9 27 ARG C 92 ILE C 108 TYR C 117 SER C 143 SITE 5 AC9 27 MET C 160 HIS C 194 ILE C 196 LEU C 210 SITE 6 AC9 27 TYR C 211 GLU C 212 HOH C 508 HOH C 523 SITE 7 AC9 27 HOH C 547 HOH C 556 HOH C 592 SITE 1 AD1 26 GLN C 39 THR C 59 PRO C 60 ALA C 61 SITE 2 AD1 26 PHE C 62 ARG C 67 ALA C 68 PHE C 69 SITE 3 AD1 26 TYR C 88 TRP C 90 ARG C 92 ILE C 108 SITE 4 AD1 26 PHE C 115 TYR C 117 SER C 143 MET C 160 SITE 5 AD1 26 HIS C 194 ILE C 196 LEU C 210 TYR C 211 SITE 6 AD1 26 GLU C 212 HOH C 521 HOH C 523 HOH C 547 SITE 7 AD1 26 HOH C 556 HOH C 592 CRYST1 51.610 83.486 184.562 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005418 0.00000