HEADER IMMUNE SYSTEM 18-FEB-20 6LZ4 TITLE CRYSTAL STRUCTURE OF PMAB-1 FV-CLASP FRAGMENT WITH ITS ANTIGEN PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PMAB-1 VH(S112C)-SARAH CHIMERA; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PMAB-1 VL-SARAH(S37C) CHIMERA; COMPND 7 CHAIN: B, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MAP PEPTIDE; COMPND 11 CHAIN: C, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_TAXID: 10116; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 8 ORGANISM_TAXID: 10116; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_TAXID: 10090 KEYWDS ANTIBODY FRAGMENT, FV-CLASP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ARIMORI,J.TAKAGI REVDAT 3 29-NOV-23 6LZ4 1 REMARK REVDAT 2 11-NOV-20 6LZ4 1 JRNL REVDAT 1 20-MAY-20 6LZ4 0 JRNL AUTH A.WAKASA,M.K.KANEKO,Y.KATO,J.TAKAGI,T.ARIMORI JRNL TITL SITE-SPECIFIC EPITOPE INSERTION INTO RECOMBINANT PROTEINS JRNL TITL 2 USING THE MAP TAG SYSTEM. JRNL REF J.BIOCHEM. V. 168 375 2020 JRNL REFN ISSN 0021-924X JRNL PMID 32386302 JRNL DOI 10.1093/JB/MVAA054 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5400 - 5.1800 1.00 2678 140 0.2037 0.2162 REMARK 3 2 5.1800 - 4.1100 1.00 2579 135 0.1899 0.2331 REMARK 3 3 4.1100 - 3.5900 1.00 2521 133 0.2286 0.2682 REMARK 3 4 3.5900 - 3.2700 1.00 2513 132 0.2700 0.2746 REMARK 3 5 3.2700 - 3.0300 1.00 2499 132 0.3025 0.3221 REMARK 3 6 3.0300 - 2.8500 1.00 2498 132 0.3356 0.3585 REMARK 3 7 2.8500 - 2.7100 1.00 2479 130 0.3513 0.3788 REMARK 3 8 2.7100 - 2.5900 1.00 2488 130 0.3633 0.3629 REMARK 3 9 2.5900 - 2.4900 0.94 2342 126 0.3954 0.4041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.441 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.095 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5289 REMARK 3 ANGLE : 0.830 7164 REMARK 3 CHIRALITY : 0.045 780 REMARK 3 PLANARITY : 0.006 915 REMARK 3 DIHEDRAL : 7.945 3185 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0682 -14.2671 -0.6069 REMARK 3 T TENSOR REMARK 3 T11: 0.6154 T22: 0.3606 REMARK 3 T33: 0.5943 T12: 0.0606 REMARK 3 T13: -0.0932 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 1.8500 L22: 2.6145 REMARK 3 L33: 5.3270 L12: 0.9815 REMARK 3 L13: 0.4880 L23: 1.8674 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.1589 S13: -0.5840 REMARK 3 S21: 0.3137 S22: 0.1531 S23: -0.3277 REMARK 3 S31: 1.1422 S32: 0.0541 S33: -0.3036 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 164) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6010 7.8434 -12.0377 REMARK 3 T TENSOR REMARK 3 T11: 0.5960 T22: 0.8604 REMARK 3 T33: 0.5299 T12: -0.0454 REMARK 3 T13: -0.0627 T23: -0.1031 REMARK 3 L TENSOR REMARK 3 L11: 1.7790 L22: 3.3503 REMARK 3 L33: 3.8250 L12: -1.8800 REMARK 3 L13: -1.7033 L23: 1.5614 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0225 S13: -0.1284 REMARK 3 S21: -0.0899 S22: 0.2995 S23: -0.1989 REMARK 3 S31: -0.0459 S32: 1.0506 S33: -0.1699 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7347 4.3557 1.9549 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.4510 REMARK 3 T33: 0.3918 T12: 0.0321 REMARK 3 T13: 0.0065 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.0620 L22: 5.9209 REMARK 3 L33: 4.0770 L12: -0.1208 REMARK 3 L13: -0.2773 L23: 0.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -0.2371 S13: 0.1019 REMARK 3 S21: 0.0517 S22: -0.0680 S23: 0.7059 REMARK 3 S31: 0.1100 S32: -0.5332 S33: 0.1556 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5635 8.8697 -4.2155 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.5776 REMARK 3 T33: 0.4656 T12: -0.0512 REMARK 3 T13: -0.0267 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.6879 L22: 4.1211 REMARK 3 L33: 6.8814 L12: -1.2595 REMARK 3 L13: -1.8271 L23: 2.8038 REMARK 3 S TENSOR REMARK 3 S11: -0.3630 S12: 0.0937 S13: -0.4171 REMARK 3 S21: -0.0603 S22: 0.0897 S23: 0.3268 REMARK 3 S31: 0.3589 S32: 0.5415 S33: 0.2671 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4378 -31.1967 -27.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.8131 T22: 0.5364 REMARK 3 T33: 0.4698 T12: -0.0528 REMARK 3 T13: 0.0639 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.9245 L22: 5.8997 REMARK 3 L33: 5.2233 L12: -1.3878 REMARK 3 L13: 1.2998 L23: -2.2247 REMARK 3 S TENSOR REMARK 3 S11: 0.5176 S12: 0.2565 S13: -0.0149 REMARK 3 S21: -0.7001 S22: -0.4320 S23: -0.4344 REMARK 3 S31: 0.1971 S32: 0.8885 S33: -0.1441 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 117 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4498 -51.7597 -15.8239 REMARK 3 T TENSOR REMARK 3 T11: 0.5196 T22: 0.5415 REMARK 3 T33: 0.4801 T12: -0.0751 REMARK 3 T13: 0.0330 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.4976 L22: 4.5085 REMARK 3 L33: 3.9297 L12: -3.4759 REMARK 3 L13: 2.3603 L23: -3.4307 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.2302 S13: 0.1576 REMARK 3 S21: -0.2798 S22: 0.1247 S23: 0.1480 REMARK 3 S31: 0.2461 S32: -0.1837 S33: -0.0258 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0028 -17.6356 -31.3769 REMARK 3 T TENSOR REMARK 3 T11: 1.0172 T22: 0.7359 REMARK 3 T33: 0.5076 T12: 0.1861 REMARK 3 T13: 0.1821 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 4.3485 L22: 3.8532 REMARK 3 L33: 6.7714 L12: -1.8847 REMARK 3 L13: 3.8633 L23: -1.6368 REMARK 3 S TENSOR REMARK 3 S11: 0.2113 S12: -0.4858 S13: 0.3505 REMARK 3 S21: 0.4204 S22: 0.0712 S23: 0.2333 REMARK 3 S31: -0.9198 S32: -1.2649 S33: -0.3296 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 119 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1834 -45.0224 -21.9808 REMARK 3 T TENSOR REMARK 3 T11: 0.3504 T22: 0.6611 REMARK 3 T33: 0.5517 T12: -0.0214 REMARK 3 T13: 0.0338 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 3.2770 L22: 1.8404 REMARK 3 L33: 3.4038 L12: 0.4304 REMARK 3 L13: 0.9221 L23: -1.9398 REMARK 3 S TENSOR REMARK 3 S11: -0.3275 S12: 1.1628 S13: 0.8061 REMARK 3 S21: 0.2245 S22: -0.0386 S23: -0.0931 REMARK 3 S31: -0.2378 S32: 0.1625 S33: 0.1082 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3376 -12.0758 4.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.7266 T22: 0.5421 REMARK 3 T33: 0.6825 T12: -0.1365 REMARK 3 T13: 0.0743 T23: -0.0645 REMARK 3 L TENSOR REMARK 3 L11: 3.0442 L22: 6.9955 REMARK 3 L33: 0.0926 L12: 4.6136 REMARK 3 L13: 0.4594 L23: 0.7174 REMARK 3 S TENSOR REMARK 3 S11: -0.3569 S12: -0.0820 S13: 0.4403 REMARK 3 S21: 0.1771 S22: 0.1434 S23: 0.2721 REMARK 3 S31: -0.1297 S32: -0.4406 S33: 0.1037 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1400 -17.1675 -34.4648 REMARK 3 T TENSOR REMARK 3 T11: 0.7949 T22: 0.6187 REMARK 3 T33: 0.5475 T12: -0.0543 REMARK 3 T13: 0.1573 T23: 0.0987 REMARK 3 L TENSOR REMARK 3 L11: 0.0680 L22: 8.5642 REMARK 3 L33: 2.2435 L12: 0.8726 REMARK 3 L13: -0.4364 L23: -4.3684 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.0111 S13: -0.4337 REMARK 3 S21: 0.5233 S22: 0.0706 S23: -0.4726 REMARK 3 S31: -0.0939 S32: -0.1579 S33: -0.0427 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23798 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 48.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 11.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.42000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LK3, 5W5Z, 5XCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM FORMATE, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.82600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.83100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.54400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.83100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.82600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.54400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 ASP A 116 REMARK 465 TYR A 117 REMARK 465 LYS B 159 REMARK 465 ILE C 9 REMARK 465 GLU C 10 REMARK 465 ASP C 11 REMARK 465 LYS C 12 REMARK 465 ILE C 13 REMARK 465 THR C 14 REMARK 465 MET D 0 REMARK 465 GLY D 114 REMARK 465 SER D 115 REMARK 465 ASP D 116 REMARK 465 LYS D 164 REMARK 465 MET E 0 REMARK 465 LYS E 107 REMARK 465 ARG E 108 REMARK 465 GLY E 109 REMARK 465 SER E 110 REMARK 465 ASP E 111 REMARK 465 TYR E 112 REMARK 465 GLU E 113 REMARK 465 PHE E 114 REMARK 465 LEU E 115 REMARK 465 LYS E 116 REMARK 465 SER E 117 REMARK 465 TRP E 118 REMARK 465 GLY F 8 REMARK 465 ILE F 9 REMARK 465 GLU F 10 REMARK 465 ASP F 11 REMARK 465 LYS F 12 REMARK 465 ILE F 13 REMARK 465 THR F 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN D 148 NH2 ARG E 18 3444 2.08 REMARK 500 OE1 GLU D 144 NH1 ARG E 18 3444 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS D 121 CD - CE - NZ ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 51 -49.58 73.18 REMARK 500 ALA B 84 -178.58 -172.61 REMARK 500 SER D 87 107.97 -57.31 REMARK 500 TYR E 30B -130.75 62.62 REMARK 500 ALA E 51 -58.67 75.79 REMARK 500 ALA E 84 -164.82 -170.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 6LZ4 A 0 164 PDB 6LZ4 6LZ4 0 164 DBREF 6LZ4 B 0 159 PDB 6LZ4 6LZ4 0 159 DBREF 6LZ4 C 1 14 PDB 6LZ4 6LZ4 1 14 DBREF 6LZ4 D 0 164 PDB 6LZ4 6LZ4 0 164 DBREF 6LZ4 E 0 159 PDB 6LZ4 6LZ4 0 159 DBREF 6LZ4 F 1 14 PDB 6LZ4 6LZ4 1 14 SEQRES 1 A 168 MET GLN ILE GLN LEU GLN GLN SER GLY THR VAL LEU VAL SEQRES 2 A 168 LYS PRO ALA SER SER VAL LYS ILE SER CYS LYS ALA SER SEQRES 3 A 168 GLY TYR SER PHE THR SER HIS TYR MET HIS TRP ILE ARG SEQRES 4 A 168 GLN GLN PRO GLY GLN GLY LEU GLU TRP ILE GLY TRP ILE SEQRES 5 A 168 SER PRO GLU GLN GLY ASN THR LYS TYR ASN GLN LYS PHE SEQRES 6 A 168 ASP GLY LYS ALA THR LEU THR ALA ASP LYS SER SER SER SEQRES 7 A 168 ILE ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SEQRES 8 A 168 SER ALA VAL TYR PHE CYS VAL SER TRP GLU ASP TRP SER SEQRES 9 A 168 ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL CYS SER SEQRES 10 A 168 GLY SER ASP TYR GLU PHE LEU LYS SER TRP THR VAL GLU SEQRES 11 A 168 ASP LEU GLN LYS ARG LEU LEU ALA LEU ASP PRO MET MET SEQRES 12 A 168 GLU GLN GLU ILE GLU GLU ILE ARG GLN LYS TYR GLN SER SEQRES 13 A 168 LYS ARG GLN PRO ILE LEU ASP ALA ILE GLU ALA LYS SEQRES 1 B 163 MET ASP ILE VAL LEU THR GLN SER PRO ALA LEU THR VAL SEQRES 2 B 163 SER LEU GLY GLN ARG ALA THR ILE SER CYS LYS THR ASN SEQRES 3 B 163 GLN ASN VAL ASP TYR TYR GLY ASN SER TYR VAL HIS TRP SEQRES 4 B 163 TYR GLN GLN LYS PRO GLY GLN LYS PRO LYS LEU LEU ILE SEQRES 5 B 163 TYR LEU ALA SER ASN LEU ALA SER GLY ILE PRO ALA ARG SEQRES 6 B 163 PHE SER GLY ARG GLY SER GLY THR ASP PHE THR LEU THR SEQRES 7 B 163 ILE ASP PRO VAL GLU ALA ALA ASP THR ALA THR TYR TYR SEQRES 8 B 163 CYS GLN GLN SER ARG ASP LEU PRO ASN THR PHE GLY ALA SEQRES 9 B 163 GLY THR LYS LEU GLU LEU LYS ARG GLY SER ASP TYR GLU SEQRES 10 B 163 PHE LEU LYS SER TRP THR VAL GLU ASP LEU GLN LYS ARG SEQRES 11 B 163 LEU LEU ALA LEU ASP PRO MET MET GLU GLN GLU ILE GLU SEQRES 12 B 163 GLU ILE ARG GLN LYS TYR GLN CYS LYS ARG GLN PRO ILE SEQRES 13 B 163 LEU ASP ALA ILE GLU ALA LYS SEQRES 1 C 14 GLY ASP GLY MET VAL PRO PRO GLY ILE GLU ASP LYS ILE SEQRES 2 C 14 THR SEQRES 1 D 168 MET GLN ILE GLN LEU GLN GLN SER GLY THR VAL LEU VAL SEQRES 2 D 168 LYS PRO ALA SER SER VAL LYS ILE SER CYS LYS ALA SER SEQRES 3 D 168 GLY TYR SER PHE THR SER HIS TYR MET HIS TRP ILE ARG SEQRES 4 D 168 GLN GLN PRO GLY GLN GLY LEU GLU TRP ILE GLY TRP ILE SEQRES 5 D 168 SER PRO GLU GLN GLY ASN THR LYS TYR ASN GLN LYS PHE SEQRES 6 D 168 ASP GLY LYS ALA THR LEU THR ALA ASP LYS SER SER SER SEQRES 7 D 168 ILE ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SEQRES 8 D 168 SER ALA VAL TYR PHE CYS VAL SER TRP GLU ASP TRP SER SEQRES 9 D 168 ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL CYS SER SEQRES 10 D 168 GLY SER ASP TYR GLU PHE LEU LYS SER TRP THR VAL GLU SEQRES 11 D 168 ASP LEU GLN LYS ARG LEU LEU ALA LEU ASP PRO MET MET SEQRES 12 D 168 GLU GLN GLU ILE GLU GLU ILE ARG GLN LYS TYR GLN SER SEQRES 13 D 168 LYS ARG GLN PRO ILE LEU ASP ALA ILE GLU ALA LYS SEQRES 1 E 163 MET ASP ILE VAL LEU THR GLN SER PRO ALA LEU THR VAL SEQRES 2 E 163 SER LEU GLY GLN ARG ALA THR ILE SER CYS LYS THR ASN SEQRES 3 E 163 GLN ASN VAL ASP TYR TYR GLY ASN SER TYR VAL HIS TRP SEQRES 4 E 163 TYR GLN GLN LYS PRO GLY GLN LYS PRO LYS LEU LEU ILE SEQRES 5 E 163 TYR LEU ALA SER ASN LEU ALA SER GLY ILE PRO ALA ARG SEQRES 6 E 163 PHE SER GLY ARG GLY SER GLY THR ASP PHE THR LEU THR SEQRES 7 E 163 ILE ASP PRO VAL GLU ALA ALA ASP THR ALA THR TYR TYR SEQRES 8 E 163 CYS GLN GLN SER ARG ASP LEU PRO ASN THR PHE GLY ALA SEQRES 9 E 163 GLY THR LYS LEU GLU LEU LYS ARG GLY SER ASP TYR GLU SEQRES 10 E 163 PHE LEU LYS SER TRP THR VAL GLU ASP LEU GLN LYS ARG SEQRES 11 E 163 LEU LEU ALA LEU ASP PRO MET MET GLU GLN GLU ILE GLU SEQRES 12 E 163 GLU ILE ARG GLN LYS TYR GLN CYS LYS ARG GLN PRO ILE SEQRES 13 E 163 LEU ASP ALA ILE GLU ALA LYS SEQRES 1 F 14 GLY ASP GLY MET VAL PRO PRO GLY ILE GLU ASP LYS ILE SEQRES 2 F 14 THR HELIX 1 AA1 GLN A 61 ASP A 64 5 4 HELIX 2 AA2 THR A 83 SER A 87 5 5 HELIX 3 AA3 GLU A 118 TRP A 123 5 6 HELIX 4 AA4 THR A 124 LYS A 164 1 41 HELIX 5 AA5 GLU B 79 THR B 83 5 5 HELIX 6 AA6 TYR B 112 TRP B 118 1 7 HELIX 7 AA7 THR B 119 ALA B 158 1 40 HELIX 8 AA8 SER D 28 HIS D 32 5 5 HELIX 9 AA9 THR D 83 SER D 87 5 5 HELIX 10 AB1 GLU D 118 SER D 122 5 5 HELIX 11 AB2 THR D 124 ARG D 154 1 31 HELIX 12 AB3 ARG D 154 ALA D 163 1 10 HELIX 13 AB4 GLU E 79 THR E 83 5 5 HELIX 14 AB5 VAL E 120 LYS E 159 1 40 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N GLN A 5 SHEET 3 AA1 4 ILE A 77 LEU A 82 -1 O LEU A 82 N VAL A 18 SHEET 4 AA1 4 ALA A 67 ASP A 72 -1 N THR A 70 O TYR A 79 SHEET 1 AA2 6 VAL A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 107 VAL A 111 1 O LEU A 108 N VAL A 10 SHEET 3 AA2 6 ALA A 88 TRP A 95 -1 N ALA A 88 O VAL A 109 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N ILE A 37 O PHE A 91 SHEET 5 AA2 6 GLU A 46 SER A 52 -1 O ILE A 48 N TRP A 36 SHEET 6 AA2 6 ASN A 56 TYR A 59 -1 O ASN A 56 N SER A 52 SHEET 1 AA3 4 VAL A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 107 VAL A 111 1 O LEU A 108 N VAL A 10 SHEET 3 AA3 4 ALA A 88 TRP A 95 -1 N ALA A 88 O VAL A 109 SHEET 4 AA3 4 ALA A 101 TRP A 103 -1 O TYR A 102 N SER A 94 SHEET 1 AA4 4 LEU B 4 THR B 5 0 SHEET 2 AA4 4 ALA B 19 THR B 25 -1 O LYS B 24 N THR B 5 SHEET 3 AA4 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA4 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AA5 6 ALA B 9 VAL B 13 0 SHEET 2 AA5 6 THR B 102 LEU B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA5 6 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA5 6 VAL B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 AA5 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA5 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA6 4 ALA B 9 VAL B 13 0 SHEET 2 AA6 4 THR B 102 LEU B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA6 4 THR B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA6 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AA7 2 ASP B 30 TYR B 30A 0 SHEET 2 AA7 2 ASN B 30D SER B 31 -1 O ASN B 30D N TYR B 30A SHEET 1 AA8 4 GLN D 3 GLN D 6 0 SHEET 2 AA8 4 SER D 17 SER D 25 -1 O LYS D 23 N GLN D 5 SHEET 3 AA8 4 ILE D 77 SER D 82A-1 O ALA D 78 N CYS D 22 SHEET 4 AA8 4 ALA D 67 ASP D 72 -1 N THR D 70 O TYR D 79 SHEET 1 AA9 6 VAL D 10 VAL D 12 0 SHEET 2 AA9 6 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 AA9 6 ALA D 88 GLU D 96 -1 N TYR D 90 O THR D 107 SHEET 4 AA9 6 MET D 34 GLN D 39 -1 N ILE D 37 O PHE D 91 SHEET 5 AA9 6 LEU D 45 ILE D 51 -1 O ILE D 48 N TRP D 36 SHEET 6 AA9 6 THR D 57 TYR D 59 -1 O LYS D 58 N TRP D 50 SHEET 1 AB1 4 VAL D 10 VAL D 12 0 SHEET 2 AB1 4 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 AB1 4 ALA D 88 GLU D 96 -1 N TYR D 90 O THR D 107 SHEET 4 AB1 4 SER D 100 TRP D 103 -1 O TYR D 102 N SER D 94 SHEET 1 AB2 4 LEU E 4 GLN E 6 0 SHEET 2 AB2 4 ALA E 19 THR E 25 -1 O LYS E 24 N THR E 5 SHEET 3 AB2 4 ASP E 70 ILE E 75 -1 O PHE E 71 N CYS E 23 SHEET 4 AB2 4 PHE E 62 SER E 67 -1 N ARG E 65 O THR E 72 SHEET 1 AB3 6 LEU E 11 THR E 12 0 SHEET 2 AB3 6 THR E 102 GLU E 105 1 O GLU E 105 N LEU E 11 SHEET 3 AB3 6 THR E 85 GLN E 90 -1 N TYR E 86 O THR E 102 SHEET 4 AB3 6 VAL E 33 GLN E 38 -1 N TYR E 36 O TYR E 87 SHEET 5 AB3 6 PRO E 44 TYR E 49 -1 O LEU E 47 N TRP E 35 SHEET 6 AB3 6 ASN E 53 LEU E 54 -1 O ASN E 53 N TYR E 49 SHEET 1 AB4 4 LEU E 11 THR E 12 0 SHEET 2 AB4 4 THR E 102 GLU E 105 1 O GLU E 105 N LEU E 11 SHEET 3 AB4 4 THR E 85 GLN E 90 -1 N TYR E 86 O THR E 102 SHEET 4 AB4 4 THR E 97 PHE E 98 -1 O THR E 97 N GLN E 90 SHEET 1 AB5 2 ASP E 30 TYR E 30A 0 SHEET 2 AB5 2 ASN E 30D SER E 31 -1 O ASN E 30D N TYR E 30A SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.01 SSBOND 2 CYS A 112 CYS B 147 1555 1555 1.96 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.06 SSBOND 4 CYS D 22 CYS D 92 1555 1555 2.02 SSBOND 5 CYS D 112 CYS E 147 1555 1555 2.04 SSBOND 6 CYS E 23 CYS E 88 1555 1555 2.03 CISPEP 1 ASP B 76 PRO B 77 0 0.15 CISPEP 2 LEU B 94 PRO B 95 0 -4.76 CISPEP 3 ASP E 76 PRO E 77 0 -5.10 CISPEP 4 LEU E 94 PRO E 95 0 -4.37 CRYST1 67.652 85.088 115.662 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014782 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008646 0.00000