HEADER LIGASE 29-FEB-20 6M2U TITLE THE CRYSTAL STRUCTURE OF BENZOATE COENZYME A LIGASE DOUBLE MUTANT TITLE 2 (H333A/I334A) IN COMPLEX WITH 2-CHLORO-1,3-THIAZOLE-5-CARBOXYLATE-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOATE-COENZYME A LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: BADA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BENZOATE, COENZYME, COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,K.ADHIKARI REVDAT 2 29-NOV-23 6M2U 1 REMARK REVDAT 1 13-JAN-21 6M2U 0 JRNL AUTH K.ADHIKARI,I.W.LO,C.L.CHEN,Y.L.WANG,K.H.LIN,S.M.ZADEH, JRNL AUTH 2 R.RATTINAM,Y.S.LI,C.J.WU,T.L.LI JRNL TITL CHEMOENZYMATIC SYNTHESIS AND BIOLOGICAL EVALUATION FOR JRNL TITL 2 BIOACTIVE MOLECULES DERIVED FROM BACTERIAL BENZOYL COENZYME JRNL TITL 3 A LIGASE AND PLANT TYPE III POLYKETIDE SYNTHASE. JRNL REF BIOMOLECULES V. 10 2020 JRNL REFN ESSN 2218-273X JRNL PMID 32397467 JRNL DOI 10.3390/BIOM10050738 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 105468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8160 - 4.1154 1.00 7632 150 0.1457 0.1599 REMARK 3 2 4.1154 - 3.2678 1.00 7541 143 0.1426 0.1696 REMARK 3 3 3.2678 - 2.8551 1.00 7569 144 0.1678 0.2030 REMARK 3 4 2.8551 - 2.5943 1.00 7538 147 0.1736 0.2313 REMARK 3 5 2.5943 - 2.4084 1.00 7517 148 0.1700 0.2050 REMARK 3 6 2.4084 - 2.2665 1.00 7461 147 0.1683 0.2091 REMARK 3 7 2.2665 - 2.1530 1.00 7524 136 0.1672 0.2055 REMARK 3 8 2.1530 - 2.0593 1.00 7503 148 0.1733 0.2207 REMARK 3 9 2.0593 - 1.9800 1.00 7511 147 0.1805 0.2301 REMARK 3 10 1.9800 - 1.9117 1.00 7487 147 0.1926 0.2356 REMARK 3 11 1.9117 - 1.8520 1.00 7455 142 0.1943 0.2238 REMARK 3 12 1.8520 - 1.7990 0.99 7495 152 0.2036 0.2307 REMARK 3 13 1.7990 - 1.7517 0.96 7211 145 0.2224 0.2951 REMARK 3 14 1.7517 - 1.7090 0.81 6028 100 0.2524 0.3230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 8107 REMARK 3 ANGLE : 1.017 11070 REMARK 3 CHIRALITY : 0.081 1230 REMARK 3 PLANARITY : 0.006 1438 REMARK 3 DIHEDRAL : 12.468 4742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105468 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.709 REMARK 200 RESOLUTION RANGE LOW (A) : 29.816 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6M2O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 0.1 M SODIUM CHLORIDE, 0.2 M REMARK 280 MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.32800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 GLN A 356 CG CD OE1 NE2 REMARK 470 PRO A 366 CG CD REMARK 470 ARG A 394 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 412 CG OD1 OD2 REMARK 470 ASP A 424 CG OD1 OD2 REMARK 470 THR A 476 OG1 CG2 REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 THR A 480 OG1 CG2 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 ASP A 488 CG OD1 OD2 REMARK 470 ARG A 497 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 VAL A 522 CG1 CG2 REMARK 470 LEU A 523 CG CD1 CD2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 GLU B 309 CG CD OE1 OE2 REMARK 470 GLN B 356 CG CD OE1 NE2 REMARK 470 PRO B 366 CG CD REMARK 470 ARG B 394 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 412 CG OD1 OD2 REMARK 470 ASP B 424 CG OD1 OD2 REMARK 470 ARG B 497 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 512 CG CD CE NZ REMARK 470 VAL B 522 CG1 CG2 REMARK 470 LEU B 523 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1158 O HOH A 1272 1.97 REMARK 500 O HOH B 1268 O HOH B 1274 1.97 REMARK 500 O HOH A 1235 O HOH A 1248 1.98 REMARK 500 O HOH A 1229 O HOH A 1230 1.98 REMARK 500 O HOH B 703 O HOH B 742 1.99 REMARK 500 O HOH B 1110 O HOH B 1267 2.00 REMARK 500 O HOH A 705 O HOH A 868 2.00 REMARK 500 O HOH B 1019 O HOH B 1109 2.01 REMARK 500 O HOH A 1090 O HOH A 1154 2.01 REMARK 500 O HOH A 884 O HOH B 806 2.04 REMARK 500 O HOH A 917 O HOH A 1258 2.05 REMARK 500 O HOH B 1192 O HOH B 1208 2.05 REMARK 500 O HOH A 1107 O HOH A 1258 2.06 REMARK 500 O HOH A 762 O HOH A 1094 2.06 REMARK 500 O HOH A 794 O HOH A 1273 2.06 REMARK 500 O HOH A 795 O HOH B 997 2.07 REMARK 500 O HOH A 1142 O HOH A 1325 2.07 REMARK 500 O HOH A 1277 O HOH A 1333 2.08 REMARK 500 O HOH A 1178 O HOH A 1225 2.08 REMARK 500 O HOH A 1005 O HOH A 1183 2.08 REMARK 500 O HOH B 1296 O HOH B 1323 2.08 REMARK 500 O HOH A 955 O HOH A 1207 2.08 REMARK 500 O HOH A 1188 O HOH A 1306 2.09 REMARK 500 O HOH B 733 O HOH B 1214 2.09 REMARK 500 O HOH B 1114 O HOH B 1148 2.09 REMARK 500 O HOH A 1100 O HOH A 1242 2.10 REMARK 500 OE1 GLU A 165 O HOH A 701 2.10 REMARK 500 O HOH A 979 O HOH A 1135 2.10 REMARK 500 O HOH A 879 O HOH A 1072 2.11 REMARK 500 O HOH B 1200 O HOH B 1253 2.11 REMARK 500 O HOH B 1180 O HOH B 1330 2.11 REMARK 500 O HOH A 763 O HOH A 936 2.11 REMARK 500 O HOH A 1205 O HOH A 1260 2.11 REMARK 500 O HOH A 1304 O HOH A 1364 2.12 REMARK 500 O HOH A 879 O HOH A 1171 2.13 REMARK 500 O HOH A 892 O HOH A 927 2.13 REMARK 500 O HOH B 1057 O HOH B 1242 2.14 REMARK 500 O ASP A 423 O HOH A 702 2.16 REMARK 500 O HOH A 1360 O HOH A 1366 2.16 REMARK 500 O HOH B 1325 O HOH B 1330 2.17 REMARK 500 O HOH A 1282 O HOH A 1331 2.17 REMARK 500 O HOH B 724 O HOH B 899 2.17 REMARK 500 O HOH B 827 O HOH B 990 2.17 REMARK 500 O HOH A 1184 O HOH A 1283 2.17 REMARK 500 O HOH A 1104 O HOH A 1149 2.18 REMARK 500 O HOH B 823 O HOH B 1306 2.19 REMARK 500 O HOH A 773 O HOH A 1314 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1173 O HOH B 893 1554 2.01 REMARK 500 O HOH A 1161 O HOH B 804 2546 2.07 REMARK 500 O HOH A 1056 O HOH B 1197 1554 2.10 REMARK 500 O HOH A 934 O HOH B 714 1554 2.16 REMARK 500 O HOH A 1303 O HOH B 1014 1554 2.16 REMARK 500 O ARG A 316 NH2 ARG B 291 1554 2.17 REMARK 500 O HOH A 1196 O HOH B 1089 2656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 63 -11.08 78.45 REMARK 500 TYR A 205 -60.07 -100.52 REMARK 500 LEU A 234 -68.24 -146.95 REMARK 500 LEU A 332 -46.41 72.29 REMARK 500 ASP A 423 18.63 -151.94 REMARK 500 ASP A 424 -9.74 73.27 REMARK 500 GLU B 63 -10.00 77.57 REMARK 500 ARG B 142 61.98 60.07 REMARK 500 LEU B 234 -71.37 -145.11 REMARK 500 LEU B 332 -43.80 72.30 REMARK 500 ASP B 423 19.45 -160.48 REMARK 500 LYS B 494 51.38 -93.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1370 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1371 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1372 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B1333 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1334 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B1335 DISTANCE = 6.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues AMP A 601 and F0O A REMARK 800 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues AMP B 601 and F0O B REMARK 800 602 DBREF 6M2U A 6 523 UNP Q93TK0 Q93TK0_RHOPL 5 522 DBREF 6M2U B 6 523 UNP Q93TK0 Q93TK0_RHOPL 5 522 SEQADV 6M2U ALA A 83 UNP Q93TK0 THR 82 ENGINEERED MUTATION SEQADV 6M2U ALA A 333 UNP Q93TK0 HIS 332 ENGINEERED MUTATION SEQADV 6M2U ALA A 334 UNP Q93TK0 ILE 333 ENGINEERED MUTATION SEQADV 6M2U ASP A 341 UNP Q93TK0 GLY 340 ENGINEERED MUTATION SEQADV 6M2U ALA B 83 UNP Q93TK0 THR 82 ENGINEERED MUTATION SEQADV 6M2U ALA B 333 UNP Q93TK0 HIS 332 ENGINEERED MUTATION SEQADV 6M2U ALA B 334 UNP Q93TK0 ILE 333 ENGINEERED MUTATION SEQADV 6M2U ASP B 341 UNP Q93TK0 GLY 340 ENGINEERED MUTATION SEQRES 1 A 518 VAL THR PRO PRO PRO GLU LYS PHE ASN PHE ALA GLU HIS SEQRES 2 A 518 LEU LEU GLN THR ASN ARG VAL ARG PRO ASP LYS THR ALA SEQRES 3 A 518 PHE VAL ASP ASP ILE SER SER LEU SER PHE ALA GLN LEU SEQRES 4 A 518 GLU ALA GLN THR ARG GLN LEU ALA ALA ALA LEU ARG ALA SEQRES 5 A 518 ILE GLY VAL LYS ARG GLU GLU ARG VAL LEU LEU LEU MET SEQRES 6 A 518 LEU ASP GLY THR ASP TRP PRO VAL ALA PHE LEU GLY ALA SEQRES 7 A 518 ILE TYR ALA GLY ILE VAL PRO VAL ALA VAL ASN THR LEU SEQRES 8 A 518 LEU THR ALA ASP ASP TYR ALA TYR MET LEU GLU HIS SER SEQRES 9 A 518 ARG ALA GLN ALA VAL LEU VAL SER GLY ALA LEU HIS PRO SEQRES 10 A 518 VAL LEU LYS ALA ALA LEU THR LYS SER ASP HIS GLU VAL SEQRES 11 A 518 GLN ARG VAL ILE VAL SER ARG PRO ALA ALA PRO LEU GLU SEQRES 12 A 518 PRO GLY GLU VAL ASP PHE ALA GLU PHE VAL GLY ALA HIS SEQRES 13 A 518 ALA PRO LEU GLU LYS PRO ALA ALA THR GLN ALA ASP ASP SEQRES 14 A 518 PRO ALA PHE TRP LEU TYR SER SER GLY SER THR GLY ARG SEQRES 15 A 518 PRO LYS GLY VAL VAL HIS THR HIS ALA ASN PRO TYR TRP SEQRES 16 A 518 THR SER GLU LEU TYR GLY ARG ASN THR LEU HIS LEU ARG SEQRES 17 A 518 GLU ASP ASP VAL CYS PHE SER ALA ALA LYS LEU PHE PHE SEQRES 18 A 518 ALA TYR GLY LEU GLY ASN ALA LEU THR PHE PRO MET THR SEQRES 19 A 518 VAL GLY ALA THR THR LEU LEU MET GLY GLU ARG PRO THR SEQRES 20 A 518 PRO ASP ALA VAL PHE LYS ARG TRP LEU GLY GLY VAL GLY SEQRES 21 A 518 GLY VAL LYS PRO THR VAL PHE TYR GLY ALA PRO THR GLY SEQRES 22 A 518 TYR ALA GLY MET LEU ALA ALA PRO ASN LEU PRO SER ARG SEQRES 23 A 518 ASP GLN VAL ALA LEU ARG LEU ALA SER SER ALA GLY GLU SEQRES 24 A 518 ALA LEU PRO ALA GLU ILE GLY GLN ARG PHE GLN ARG HIS SEQRES 25 A 518 PHE GLY LEU ASP ILE VAL ASP GLY ILE GLY SER THR GLU SEQRES 26 A 518 MET LEU ALA ALA PHE LEU SER ASN LEU PRO ASP ARG VAL SEQRES 27 A 518 ARG TYR GLY THR THR GLY TRP PRO VAL PRO GLY TYR GLN SEQRES 28 A 518 ILE GLU LEU ARG GLY ASP GLY GLY GLY PRO VAL ALA ASP SEQRES 29 A 518 GLY GLU PRO GLY ASP LEU TYR ILE HIS GLY PRO SER SER SEQRES 30 A 518 ALA THR MET TYR TRP GLY ASN ARG ALA LYS SER ARG ASP SEQRES 31 A 518 THR PHE GLN GLY GLY TRP THR LYS SER GLY ASP LYS TYR SEQRES 32 A 518 VAL ARG ASN ASP ASP GLY SER TYR THR TYR ALA GLY ARG SEQRES 33 A 518 THR ASP ASP MET LEU LYS VAL SER GLY ILE TYR VAL SER SEQRES 34 A 518 PRO PHE GLU ILE GLU ALA THR LEU VAL GLN HIS PRO GLY SEQRES 35 A 518 VAL LEU GLU ALA ALA VAL VAL GLY VAL ALA ASP GLU HIS SEQRES 36 A 518 GLY LEU THR LYS PRO LYS ALA TYR VAL VAL PRO ARG PRO SEQRES 37 A 518 GLY GLN THR LEU SER GLU THR GLU LEU LYS THR PHE ILE SEQRES 38 A 518 LYS ASP ARG LEU ALA PRO TYR LYS TYR PRO ARG SER THR SEQRES 39 A 518 VAL PHE VAL ALA GLU LEU PRO LYS THR ALA THR GLY LYS SEQRES 40 A 518 ILE GLN ARG PHE LYS LEU ARG GLU GLY VAL LEU SEQRES 1 B 518 VAL THR PRO PRO PRO GLU LYS PHE ASN PHE ALA GLU HIS SEQRES 2 B 518 LEU LEU GLN THR ASN ARG VAL ARG PRO ASP LYS THR ALA SEQRES 3 B 518 PHE VAL ASP ASP ILE SER SER LEU SER PHE ALA GLN LEU SEQRES 4 B 518 GLU ALA GLN THR ARG GLN LEU ALA ALA ALA LEU ARG ALA SEQRES 5 B 518 ILE GLY VAL LYS ARG GLU GLU ARG VAL LEU LEU LEU MET SEQRES 6 B 518 LEU ASP GLY THR ASP TRP PRO VAL ALA PHE LEU GLY ALA SEQRES 7 B 518 ILE TYR ALA GLY ILE VAL PRO VAL ALA VAL ASN THR LEU SEQRES 8 B 518 LEU THR ALA ASP ASP TYR ALA TYR MET LEU GLU HIS SER SEQRES 9 B 518 ARG ALA GLN ALA VAL LEU VAL SER GLY ALA LEU HIS PRO SEQRES 10 B 518 VAL LEU LYS ALA ALA LEU THR LYS SER ASP HIS GLU VAL SEQRES 11 B 518 GLN ARG VAL ILE VAL SER ARG PRO ALA ALA PRO LEU GLU SEQRES 12 B 518 PRO GLY GLU VAL ASP PHE ALA GLU PHE VAL GLY ALA HIS SEQRES 13 B 518 ALA PRO LEU GLU LYS PRO ALA ALA THR GLN ALA ASP ASP SEQRES 14 B 518 PRO ALA PHE TRP LEU TYR SER SER GLY SER THR GLY ARG SEQRES 15 B 518 PRO LYS GLY VAL VAL HIS THR HIS ALA ASN PRO TYR TRP SEQRES 16 B 518 THR SER GLU LEU TYR GLY ARG ASN THR LEU HIS LEU ARG SEQRES 17 B 518 GLU ASP ASP VAL CYS PHE SER ALA ALA LYS LEU PHE PHE SEQRES 18 B 518 ALA TYR GLY LEU GLY ASN ALA LEU THR PHE PRO MET THR SEQRES 19 B 518 VAL GLY ALA THR THR LEU LEU MET GLY GLU ARG PRO THR SEQRES 20 B 518 PRO ASP ALA VAL PHE LYS ARG TRP LEU GLY GLY VAL GLY SEQRES 21 B 518 GLY VAL LYS PRO THR VAL PHE TYR GLY ALA PRO THR GLY SEQRES 22 B 518 TYR ALA GLY MET LEU ALA ALA PRO ASN LEU PRO SER ARG SEQRES 23 B 518 ASP GLN VAL ALA LEU ARG LEU ALA SER SER ALA GLY GLU SEQRES 24 B 518 ALA LEU PRO ALA GLU ILE GLY GLN ARG PHE GLN ARG HIS SEQRES 25 B 518 PHE GLY LEU ASP ILE VAL ASP GLY ILE GLY SER THR GLU SEQRES 26 B 518 MET LEU ALA ALA PHE LEU SER ASN LEU PRO ASP ARG VAL SEQRES 27 B 518 ARG TYR GLY THR THR GLY TRP PRO VAL PRO GLY TYR GLN SEQRES 28 B 518 ILE GLU LEU ARG GLY ASP GLY GLY GLY PRO VAL ALA ASP SEQRES 29 B 518 GLY GLU PRO GLY ASP LEU TYR ILE HIS GLY PRO SER SER SEQRES 30 B 518 ALA THR MET TYR TRP GLY ASN ARG ALA LYS SER ARG ASP SEQRES 31 B 518 THR PHE GLN GLY GLY TRP THR LYS SER GLY ASP LYS TYR SEQRES 32 B 518 VAL ARG ASN ASP ASP GLY SER TYR THR TYR ALA GLY ARG SEQRES 33 B 518 THR ASP ASP MET LEU LYS VAL SER GLY ILE TYR VAL SER SEQRES 34 B 518 PRO PHE GLU ILE GLU ALA THR LEU VAL GLN HIS PRO GLY SEQRES 35 B 518 VAL LEU GLU ALA ALA VAL VAL GLY VAL ALA ASP GLU HIS SEQRES 36 B 518 GLY LEU THR LYS PRO LYS ALA TYR VAL VAL PRO ARG PRO SEQRES 37 B 518 GLY GLN THR LEU SER GLU THR GLU LEU LYS THR PHE ILE SEQRES 38 B 518 LYS ASP ARG LEU ALA PRO TYR LYS TYR PRO ARG SER THR SEQRES 39 B 518 VAL PHE VAL ALA GLU LEU PRO LYS THR ALA THR GLY LYS SEQRES 40 B 518 ILE GLN ARG PHE LYS LEU ARG GLU GLY VAL LEU HET AMP A 601 35 HET F0O A 602 10 HET AMP B 601 35 HET F0O B 602 10 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM F0O 2-CHLORANYL-1,3-THIAZOLE-5-CARBOXYLIC ACID FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 F0O 2(C4 H2 CL N O2 S) FORMUL 7 HOH *1307(H2 O) HELIX 1 AA1 ASN A 14 ASN A 23 1 10 HELIX 2 AA2 PHE A 41 ILE A 58 1 18 HELIX 3 AA3 THR A 74 ALA A 86 1 13 HELIX 4 AA4 THR A 98 ARG A 110 1 13 HELIX 5 AA5 LEU A 120 SER A 131 1 12 HELIX 6 AA6 PHE A 154 ALA A 160 1 7 HELIX 7 AA7 HIS A 195 TYR A 205 1 11 HELIX 8 AA8 PHE A 226 ALA A 233 1 8 HELIX 9 AA9 LEU A 234 GLY A 241 1 8 HELIX 10 AB1 THR A 252 LEU A 261 1 10 HELIX 11 AB2 ALA A 275 ALA A 284 1 10 HELIX 12 AB3 SER A 290 VAL A 294 5 5 HELIX 13 AB4 PRO A 307 GLY A 319 1 13 HELIX 14 AB5 ASN A 389 THR A 396 1 8 HELIX 15 AB6 SER A 434 VAL A 443 1 10 HELIX 16 AB7 SER A 478 ASP A 488 1 11 HELIX 17 AB8 ALA A 491 TYR A 495 5 5 HELIX 18 AB9 GLN A 514 GLU A 520 1 7 HELIX 19 AC1 ASN B 14 ASN B 23 1 10 HELIX 20 AC2 PHE B 41 ILE B 58 1 18 HELIX 21 AC3 THR B 74 ALA B 86 1 13 HELIX 22 AC4 THR B 98 ARG B 110 1 13 HELIX 23 AC5 LEU B 120 SER B 131 1 12 HELIX 24 AC6 PHE B 154 ALA B 160 1 7 HELIX 25 AC7 HIS B 195 TYR B 205 1 11 HELIX 26 AC8 PHE B 226 ALA B 233 1 8 HELIX 27 AC9 LEU B 234 GLY B 241 1 8 HELIX 28 AD1 THR B 252 LEU B 261 1 10 HELIX 29 AD2 ALA B 275 ALA B 285 1 11 HELIX 30 AD3 SER B 290 VAL B 294 5 5 HELIX 31 AD4 PRO B 307 GLY B 319 1 13 HELIX 32 AD5 ASN B 389 THR B 396 1 8 HELIX 33 AD6 SER B 434 VAL B 443 1 10 HELIX 34 AD7 SER B 478 ASP B 488 1 11 HELIX 35 AD8 GLN B 514 GLY B 521 1 8 SHEET 1 AA1 9 SER A 38 SER A 40 0 SHEET 2 AA1 9 THR A 30 VAL A 33 -1 N PHE A 32 O LEU A 39 SHEET 3 AA1 9 THR A 243 LEU A 245 1 O THR A 244 N ALA A 31 SHEET 4 AA1 9 VAL A 217 SER A 220 1 N CYS A 218 O LEU A 245 SHEET 5 AA1 9 VAL A 271 GLY A 274 1 N VAL A 271 O VAL A 217 SHEET 6 AA1 9 LEU A 298 SER A 301 1 O SER A 300 N PHE A 272 SHEET 7 AA1 9 ILE A 322 ILE A 326 1 O VAL A 323 N ALA A 299 SHEET 8 AA1 9 LEU A 336 SER A 337 -1 O LEU A 336 N ILE A 326 SHEET 9 AA1 9 TRP A 350 PRO A 351 -1 O TRP A 350 N SER A 337 SHEET 1 AA2 7 VAL A 152 ASP A 153 0 SHEET 2 AA2 7 ARG A 137 SER A 141 1 N VAL A 140 O VAL A 152 SHEET 3 AA2 7 ALA A 113 SER A 117 1 N VAL A 114 O ILE A 139 SHEET 4 AA2 7 ARG A 65 LEU A 69 1 N LEU A 69 O LEU A 115 SHEET 5 AA2 7 VAL A 89 ALA A 92 1 O VAL A 91 N LEU A 68 SHEET 6 AA2 7 PRO A 175 SER A 181 1 O TRP A 178 N PRO A 90 SHEET 7 AA2 7 LYS A 189 THR A 194 -1 O HIS A 193 N ALA A 176 SHEET 1 AA3 4 GLN A 356 ARG A 360 0 SHEET 2 AA3 4 PRO A 372 HIS A 378 -1 O HIS A 378 N GLN A 356 SHEET 3 AA3 4 TRP A 401 ARG A 410 -1 O ASP A 406 N LEU A 375 SHEET 4 AA3 4 PHE A 397 GLN A 398 -1 N GLN A 398 O TRP A 401 SHEET 1 AA4 4 GLN A 356 ARG A 360 0 SHEET 2 AA4 4 PRO A 372 HIS A 378 -1 O HIS A 378 N GLN A 356 SHEET 3 AA4 4 TRP A 401 ARG A 410 -1 O ASP A 406 N LEU A 375 SHEET 4 AA4 4 TYR A 416 ARG A 421 -1 O GLY A 420 N LYS A 407 SHEET 1 AA5 2 LEU A 426 VAL A 428 0 SHEET 2 AA5 2 ILE A 431 VAL A 433 -1 O VAL A 433 N LEU A 426 SHEET 1 AA6 3 VAL A 448 ALA A 457 0 SHEET 2 AA6 3 THR A 463 PRO A 471 -1 O VAL A 470 N LEU A 449 SHEET 3 AA6 3 SER A 498 PHE A 501 1 O VAL A 500 N ALA A 467 SHEET 1 AA7 9 SER B 38 SER B 40 0 SHEET 2 AA7 9 THR B 30 VAL B 33 -1 N PHE B 32 O LEU B 39 SHEET 3 AA7 9 THR B 243 LEU B 245 1 O THR B 244 N ALA B 31 SHEET 4 AA7 9 VAL B 217 SER B 220 1 N CYS B 218 O LEU B 245 SHEET 5 AA7 9 VAL B 271 GLY B 274 1 N VAL B 271 O VAL B 217 SHEET 6 AA7 9 LEU B 298 SER B 301 1 O SER B 300 N PHE B 272 SHEET 7 AA7 9 ILE B 322 ILE B 326 1 O VAL B 323 N ALA B 299 SHEET 8 AA7 9 LEU B 336 SER B 337 -1 O LEU B 336 N ILE B 326 SHEET 9 AA7 9 TRP B 350 PRO B 351 -1 O TRP B 350 N SER B 337 SHEET 1 AA8 7 GLU B 151 ASP B 153 0 SHEET 2 AA8 7 ARG B 137 SER B 141 1 N VAL B 140 O VAL B 152 SHEET 3 AA8 7 ALA B 113 SER B 117 1 N VAL B 114 O ILE B 139 SHEET 4 AA8 7 ARG B 65 LEU B 69 1 N LEU B 67 O LEU B 115 SHEET 5 AA8 7 VAL B 89 ALA B 92 1 O VAL B 91 N LEU B 68 SHEET 6 AA8 7 PRO B 175 SER B 181 1 O TRP B 178 N PRO B 90 SHEET 7 AA8 7 LYS B 189 THR B 194 -1 O HIS B 193 N ALA B 176 SHEET 1 AA9 4 GLN B 356 ARG B 360 0 SHEET 2 AA9 4 PRO B 372 HIS B 378 -1 O HIS B 378 N GLN B 356 SHEET 3 AA9 4 TRP B 401 ARG B 410 -1 O THR B 402 N ILE B 377 SHEET 4 AA9 4 PHE B 397 GLN B 398 -1 N GLN B 398 O TRP B 401 SHEET 1 AB1 4 GLN B 356 ARG B 360 0 SHEET 2 AB1 4 PRO B 372 HIS B 378 -1 O HIS B 378 N GLN B 356 SHEET 3 AB1 4 TRP B 401 ARG B 410 -1 O THR B 402 N ILE B 377 SHEET 4 AB1 4 TYR B 416 ARG B 421 -1 O GLY B 420 N LYS B 407 SHEET 1 AB2 2 LEU B 426 VAL B 428 0 SHEET 2 AB2 2 ILE B 431 VAL B 433 -1 O VAL B 433 N LEU B 426 SHEET 1 AB3 3 VAL B 448 ALA B 457 0 SHEET 2 AB3 3 THR B 463 PRO B 471 -1 O TYR B 468 N ALA B 452 SHEET 3 AB3 3 SER B 498 PHE B 501 1 O VAL B 500 N ALA B 467 LINK P AMP A 601 O12 F0O A 602 1555 1555 1.64 LINK P AMP B 601 O12 F0O B 602 1555 1555 1.66 SITE 1 AC1 26 TYR A 228 ALA A 302 GLY A 303 GLU A 304 SITE 2 AC1 26 ALA A 305 ASP A 324 GLY A 325 ILE A 326 SITE 3 AC1 26 GLY A 327 SER A 328 THR A 329 ALA A 333 SITE 4 AC1 26 ALA A 334 SER A 404 ASP A 406 ARG A 421 SITE 5 AC1 26 LYS A 427 TYR A 432 HOH A 724 HOH A 727 SITE 6 AC1 26 HOH A 749 HOH A 818 HOH A 920 HOH A 944 SITE 7 AC1 26 HOH A1076 HOH A1200 SITE 1 AC2 24 TYR B 228 ALA B 302 GLY B 303 GLU B 304 SITE 2 AC2 24 ALA B 305 ASP B 324 GLY B 325 ILE B 326 SITE 3 AC2 24 GLY B 327 SER B 328 THR B 329 ALA B 333 SITE 4 AC2 24 ALA B 334 ASP B 406 ARG B 421 LYS B 427 SITE 5 AC2 24 TYR B 432 HOH B 722 HOH B 730 HOH B 815 SITE 6 AC2 24 HOH B 870 HOH B 887 HOH B1044 HOH B1070 CRYST1 58.524 94.656 94.355 90.00 104.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017087 0.000000 0.004571 0.00000 SCALE2 0.000000 0.010565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010971 0.00000