HEADER CELL ADHESION 04-MAR-20 6M3Y TITLE CRYSTAL STRUCTURE OF PILUS ADHESIN, SPAC FROM LACTOBACILLUS RHAMNOSUS TITLE 2 GG - OPEN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILUS ASSEMBLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS; SOURCE 3 ORGANISM_TAXID: 47715; SOURCE 4 ATCC: 53103; SOURCE 5 GENE: CCE29_04955; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PILUS ADHESIN, TIP PILIN, VWFA DOMAIN, SPACBA PILUS, SORTASE, KEYWDS 2 LACTOBACILLUS RHAMNOSUS GG, PILI, FIMBRIA, PROBIOTICS, SPAC, LECTIN, KEYWDS 3 SURFACE PROTEIN., CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.KANT,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN REVDAT 4 09-OCT-24 6M3Y 1 REMARK REVDAT 3 15-SEP-21 6M3Y 1 REMARK LINK REVDAT 2 19-AUG-20 6M3Y 1 JRNL REVDAT 1 29-JUL-20 6M3Y 0 JRNL AUTH A.KANT,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN JRNL TITL CRYSTAL STRUCTURE OF LACTOBACILLAR SPAC REVEALS AN ATYPICAL JRNL TITL 2 FIVE-DOMAIN PILUS TIP ADHESIN: EXPOSING ITS JRNL TITL 3 SUBSTRATE-BINDING AND ASSEMBLY IN SPACBA PILI. JRNL REF J.STRUCT.BIOL. V. 211 07571 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32653644 JRNL DOI 10.1016/J.JSB.2020.107571 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 59.8 REMARK 3 NUMBER OF REFLECTIONS : 49612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6327 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5518 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8598 ; 1.311 ; 1.866 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12917 ; 1.026 ; 2.930 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 808 ; 6.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;38.837 ;26.376 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1018 ;13.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 963 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7192 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1172 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3241 ; 1.627 ; 2.130 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3240 ; 1.627 ; 2.130 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4046 ; 2.546 ; 3.189 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4047 ; 2.546 ; 3.189 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3086 ; 2.134 ; 2.281 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3084 ; 2.134 ; 2.281 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4552 ; 3.284 ; 3.348 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6602 ; 4.741 ;24.517 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6600 ; 4.741 ;24.511 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7390 0.0050 -10.0740 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.0232 REMARK 3 T33: 0.1639 T12: -0.0409 REMARK 3 T13: -0.0230 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.0820 L22: 1.2861 REMARK 3 L33: 2.4600 L12: -0.2220 REMARK 3 L13: -0.9833 L23: 0.4353 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.1217 S13: 0.1335 REMARK 3 S21: 0.1716 S22: -0.0458 S23: -0.2117 REMARK 3 S31: 0.0827 S32: 0.1355 S33: -0.0284 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 128 REMARK 3 RESIDUE RANGE : A 386 A 493 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8670 14.3850 36.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.0066 REMARK 3 T33: 0.0564 T12: -0.0048 REMARK 3 T13: -0.0185 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.1099 L22: 1.9191 REMARK 3 L33: 3.2734 L12: 0.4454 REMARK 3 L13: 0.2252 L23: 0.9989 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.0726 S13: 0.0154 REMARK 3 S21: -0.0357 S22: -0.0428 S23: 0.0392 REMARK 3 S31: 0.1350 S32: -0.0929 S33: 0.0526 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 494 A 597 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2090 20.7270 74.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.0867 REMARK 3 T33: 0.2435 T12: 0.0363 REMARK 3 T13: -0.0624 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.1264 L22: 0.6622 REMARK 3 L33: 6.7424 L12: 0.1860 REMARK 3 L13: 3.0981 L23: 0.0908 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0506 S13: 0.2735 REMARK 3 S21: 0.0200 S22: -0.0501 S23: 0.0228 REMARK 3 S31: -0.1491 S32: -0.0821 S33: 0.0584 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 598 A 731 REMARK 3 ORIGIN FOR THE GROUP (A): 68.7180 11.7460 97.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.0270 REMARK 3 T33: 0.1910 T12: 0.0436 REMARK 3 T13: -0.0878 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.4570 L22: 3.5704 REMARK 3 L33: 3.5113 L12: 0.2006 REMARK 3 L13: 0.0726 L23: -0.9514 REMARK 3 S TENSOR REMARK 3 S11: 0.2424 S12: -0.0489 S13: -0.4610 REMARK 3 S21: 0.1342 S22: -0.0643 S23: -0.2057 REMARK 3 S31: 0.4730 S32: 0.2016 S33: -0.1781 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 732 A 857 REMARK 3 ORIGIN FOR THE GROUP (A): 79.6030 7.8250 139.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.3016 T22: 0.2455 REMARK 3 T33: 0.2976 T12: 0.0098 REMARK 3 T13: -0.0697 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 1.5901 L22: 1.0241 REMARK 3 L33: 4.9628 L12: -0.3119 REMARK 3 L13: -0.7142 L23: 1.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.3742 S13: 0.2038 REMARK 3 S21: -0.2914 S22: -0.0100 S23: 0.1981 REMARK 3 S31: -0.3426 S32: -0.2817 S33: 0.0217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6M3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52205 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 83.531 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM SULPHATE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5, 25% (W/V) PEG 3350, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.52250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.17200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.01150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.17200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.52250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.01150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 150 REMARK 465 ASN A 151 REMARK 465 ARG A 152 REMARK 465 TRP A 153 REMARK 465 GLY A 154 REMARK 465 THR A 155 REMARK 465 VAL A 524 REMARK 465 ALA A 525 REMARK 465 ASP A 526 REMARK 465 GLY A 527 REMARK 465 SER A 528 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 THR A 246 OG1 CG2 REMARK 470 ASP A 359 CG OD1 OD2 REMARK 470 ASP A 365 CG OD1 OD2 REMARK 470 ASP A 569 CG OD1 OD2 REMARK 470 ASP A 718 CG OD1 OD2 REMARK 470 ASP A 729 OD2 REMARK 470 LYS A 814 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 604 CG ASP A 729 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 46 -165.55 -161.33 REMARK 500 SER A 189 -107.19 -132.76 REMARK 500 TYR A 193 -114.37 -103.53 REMARK 500 ASP A 339 -115.75 33.98 REMARK 500 ASN A 690 85.18 -150.45 REMARK 500 LEU A 703 -159.58 -118.29 REMARK 500 ALA A 770 32.67 -95.57 REMARK 500 ASP A 784 -15.61 79.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 145 OG REMARK 620 2 SER A 147 OG 92.3 REMARK 620 3 THR A 229 OG1 89.0 173.2 REMARK 620 4 LEU A 857 OXT 85.0 50.2 123.4 REMARK 620 5 HOH A1019 O 80.1 80.2 93.5 30.0 REMARK 620 6 HOH A1074 O 165.3 91.6 85.5 86.6 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 DBREF1 6M3Y A 36 856 UNP A0A1Y0DVK9_LACRH DBREF2 6M3Y A A0A1Y0DVK9 36 856 SEQADV 6M3Y LEU A 857 UNP A0A1Y0DVK EXPRESSION TAG SEQRES 1 A 822 THR ASP ASN ILE ARG PRO THR TYR GLN THR ASP ALA ASN SEQRES 2 A 822 GLY THR TYR PRO THR ASN SER TRP GLN VAL THR GLY GLN SEQRES 3 A 822 GLN ASN VAL ILE ASN GLN ARG GLY GLY ASP GLN VAL SER SEQRES 4 A 822 GLY TRP ASP ASN ASN THR ILE TRP ASN GLY ASP ALA THR SEQRES 5 A 822 ASP THR THR ASN SER TYR LEU LYS PHE GLY ASP PRO ASN SEQRES 6 A 822 ASN PRO ASP TYR GLN ILE ARG LYS TYR ALA LYS GLU THR SEQRES 7 A 822 ASN THR PRO GLY LEU TYR ASP VAL TYR LEU ASN VAL LYS SEQRES 8 A 822 GLY ASN LYS GLN GLN ASN VAL LYS PRO VAL ASP ILE VAL SEQRES 9 A 822 LEU VAL VAL ASP MET SER GLY SER MET GLU SER ASN ARG SEQRES 10 A 822 TRP GLY THR ASN ARG ALA GLY ALA VAL ARG THR GLY VAL SEQRES 11 A 822 LYS ASN PHE LEU THR SER ILE GLN ASN ALA GLY LEU GLY SEQRES 12 A 822 ASN TYR VAL ASN VAL GLY LEU ILE GLY PHE SER SER PRO SEQRES 13 A 822 GLY TYR ILE GLY GLY LYS SER GLY TYR ILE SER VAL LYS SEQRES 14 A 822 LEU GLY LYS ALA GLY ASN ALA SER GLN GLN GLN ALA ILE SEQRES 15 A 822 ASN GLY ALA LEU SER PRO ARG PHE GLN GLY GLY THR TYR SEQRES 16 A 822 THR GLN ILE GLY LEU ARG GLN GLY SER ALA MET LEU ASN SEQRES 17 A 822 ALA ASP THR SER GLY ASN LYS LYS MET MET ILE LEU LEU SEQRES 18 A 822 THR ASP GLY VAL PRO THR PHE SER ASN GLU VAL ILE ASN SEQRES 19 A 822 SER GLU TRP ILE ASN GLY THR LEU TYR GLY THR ASN PHE SEQRES 20 A 822 GLY SER SER ARG ASP GLU PRO GLY ASN THR ALA ARG LEU SEQRES 21 A 822 ARG TRP PRO TYR THR ASP SER SER GLY HIS TYR ILE TYR SEQRES 22 A 822 ASP THR TRP PRO ALA THR LEU GLY GLU ALA LYS ILE ALA SEQRES 23 A 822 LYS ASP SER GLY ASN GLU VAL HIS ALA LEU GLY ILE GLN SEQRES 24 A 822 LEU ALA ASP ASP ASP HIS TYR MET THR LYS GLU LYS ILE SEQRES 25 A 822 ARG GLN ASN MET GLN LEU ILE THR ASN SER PRO ASP LEU SEQRES 26 A 822 TYR GLU ASP ALA ASP SER ALA ASP ALA VAL GLU ALA TYR SEQRES 27 A 822 LEU ASN ASN GLN ALA LYS ASP ILE ILE LYS ASN PHE ASN SEQRES 28 A 822 THR VAL THR ASP GLY THR ILE THR ASP PRO ILE GLY THR SEQRES 29 A 822 GLN PHE GLN TYR ALA ASN ASN GLN ALA THR VAL THR SER SEQRES 30 A 822 VAL GLY LYS GLN THR VAL PRO ALA SER GLU LEU PRO SER SEQRES 31 A 822 ALA ALA ILE GLN ASP GLY GLN LEU THR VAL ASN HIS MET SEQRES 32 A 822 ASN LEU GLY GLN ASP GLN GLU VAL GLN ILE HIS TYR GLN SEQRES 33 A 822 VAL ARG ILE LYS THR GLU ASP ALA GLY PHE LYS PRO ASP SEQRES 34 A 822 PHE TRP TYR GLN MET ASN GLY GLU THR LEU LEU THR PRO SEQRES 35 A 822 LYS ALA GLY ALA ALA ALA VAL ASP PHE GLY ILE PRO SER SEQRES 36 A 822 GLY ARG ALA PRO ALA THR THR VAL TYR VAL GLN LYS GLN SEQRES 37 A 822 TRP ARG GLN LEU SER ASN GLN SER LEU PRO ASP THR LEU SEQRES 38 A 822 ASN VAL THR VAL GLN ARG LYS VAL ALA ASP GLY SER LEU SEQRES 39 A 822 ASP PRO ASN TRP GLN GLN THR LEU VAL LEU LYS LYS ALA SEQRES 40 A 822 ASP ASN TRP LYS ALA SER PHE THR ALA PRO ALA TYR ASN SEQRES 41 A 822 ASN GLN GLY GLN SER PHE SER TYR VAL VAL LYS SER GLU SEQRES 42 A 822 ASP ALA SER GLY ILE ASP LEU SER SER PHE ILE SER SER SEQRES 43 A 822 GLN ASN MET ASP GLN GLN THR ALA THR LEU THR LEU THR SEQRES 44 A 822 ASN GLN GLN TYR GLY PHE GLN PHE GLN LYS LYS THR THR SEQRES 45 A 822 ASP GLY THR ASP LEU SER ALA ASP GLN LEU LYS ALA MET SEQRES 46 A 822 GLN PHE ASN LEU THR GLN TYR SER ASP ASN SER PHE GLN SEQRES 47 A 822 GLN ALA SER LYS THR ASN ALA ILE THR SER THR ASP LEU SEQRES 48 A 822 GLN ALA LEU ALA PRO GLY TYR TYR GLY ILE GLN GLU ALA SEQRES 49 A 822 ALA ALA PRO THR GLY TYR GLN LEU ASP GLY THR THR TYR SEQRES 50 A 822 LEU PHE GLN LEU THR SER ASP GLY GLN TRP GLN TYR HIS SEQRES 51 A 822 GLY THR LYS ASP ASN VAL THR SER GLY SER VAL ILE ASN SEQRES 52 A 822 GLY GLN GLN THR LEU ASN PRO VAL GLY ASP LYS SER ASP SEQRES 53 A 822 ASP PHE THR VAL THR GLY ASP HIS GLN GLN ILE LEU THR SEQRES 54 A 822 LEU THR LYS TYR ASP GLU PRO LYS PRO SER MET THR LEU SEQRES 55 A 822 ARG VAL ILE LYS GLN ASP ASN GLN SER GLN TYR LEU ALA SEQRES 56 A 822 GLY ALA ALA PHE THR LEU GLN PRO SER ALA GLY GLU ALA SEQRES 57 A 822 GLU THR ILE THR SER SER ALA THR SER GLU GLY GLN ALA SEQRES 58 A 822 PHE ALA THR LYS LEU VAL ALA ASP GLY THR TYR THR MET SEQRES 59 A 822 SER GLU THR LYS ALA PRO ASP GLY TYR GLN SER ASN PRO SEQRES 60 A 822 ALA LYS ILE ALA ILE GLN VAL ALA THR THR GLY LYS GLU SEQRES 61 A 822 ALA THR VAL THR ILE ASP GLY GLU ALA LEU LYS PRO GLY SEQRES 62 A 822 GLU SER LYS ASN GLY TYR THR LEU ALA ILE ASP GLY SER SEQRES 63 A 822 THR ILE THR LEU GLN ALA ILE ASN GLN PRO LEU ALA ILE SEQRES 64 A 822 LEU PRO LEU HET MG A 901 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *99(H2 O) HELIX 1 AA1 THR A 36 ARG A 40 5 5 HELIX 2 AA2 SER A 145 GLU A 149 5 5 HELIX 3 AA3 ARG A 157 ALA A 175 1 19 HELIX 4 AA4 LEU A 177 ASN A 179 5 3 HELIX 5 AA5 GLY A 195 SER A 198 5 4 HELIX 6 AA6 ASN A 210 LEU A 221 1 12 HELIX 7 AA7 TYR A 230 ALA A 244 1 15 HELIX 8 AA8 THR A 310 SER A 324 1 15 HELIX 9 AA9 THR A 343 THR A 355 1 13 HELIX 10 AB1 SER A 357 ASP A 359 5 3 HELIX 11 AB2 SER A 366 PHE A 385 1 20 HELIX 12 AB3 ALA A 542 ASN A 544 5 3 HELIX 13 AB4 SER A 613 ALA A 619 1 7 SHEET 1 AA1 2 TYR A 43 ASP A 46 0 SHEET 2 AA1 2 GLY A 49 PRO A 52 -1 O GLY A 49 N ASP A 46 SHEET 1 AA2 5 ILE A 81 TRP A 82 0 SHEET 2 AA2 5 SER A 55 VAL A 58 1 N GLN A 57 O TRP A 82 SHEET 3 AA2 5 VAL A 64 GLN A 67 -1 O ASN A 66 N TRP A 56 SHEET 4 AA2 5 SER A 490 GLY A 491 -1 O SER A 490 N ILE A 65 SHEET 5 AA2 5 TYR A 467 GLN A 468 -1 N TYR A 467 O GLY A 491 SHEET 1 AA3 7 GLY A 75 TRP A 76 0 SHEET 2 AA3 7 GLY A 70 ASP A 71 -1 N ASP A 71 O GLY A 75 SHEET 3 AA3 7 LEU A 94 PHE A 96 1 O LYS A 95 N GLY A 70 SHEET 4 AA3 7 TYR A 104 GLU A 112 -1 O ILE A 106 N LEU A 94 SHEET 5 AA3 7 LEU A 118 LYS A 126 -1 O ASN A 124 N ARG A 107 SHEET 6 AA3 7 GLU A 445 ILE A 454 -1 O VAL A 452 N TYR A 119 SHEET 7 AA3 7 PHE A 401 TYR A 403 -1 N GLN A 402 O ARG A 453 SHEET 1 AA4 7 GLY A 75 TRP A 76 0 SHEET 2 AA4 7 GLY A 70 ASP A 71 -1 N ASP A 71 O GLY A 75 SHEET 3 AA4 7 LEU A 94 PHE A 96 1 O LYS A 95 N GLY A 70 SHEET 4 AA4 7 TYR A 104 GLU A 112 -1 O ILE A 106 N LEU A 94 SHEET 5 AA4 7 LEU A 118 LYS A 126 -1 O ASN A 124 N ARG A 107 SHEET 6 AA4 7 GLU A 445 ILE A 454 -1 O VAL A 452 N TYR A 119 SHEET 7 AA4 7 THR A 409 SER A 412 -1 N THR A 411 O GLN A 447 SHEET 1 AA5 6 TYR A 200 LYS A 207 0 SHEET 2 AA5 6 VAL A 181 PHE A 188 -1 N VAL A 183 O GLY A 206 SHEET 3 AA5 6 VAL A 136 ASP A 143 1 N ILE A 138 O ASN A 182 SHEET 4 AA5 6 LYS A 250 THR A 257 1 O LYS A 250 N ASP A 137 SHEET 5 AA5 6 GLU A 327 ILE A 333 1 O LEU A 331 N LEU A 255 SHEET 6 AA5 6 TYR A 361 ALA A 364 1 O GLU A 362 N GLY A 332 SHEET 1 AA6 2 SER A 264 ILE A 273 0 SHEET 2 AA6 2 THR A 276 ASP A 287 -1 O ASP A 287 N SER A 264 SHEET 1 AA7 2 ARG A 294 THR A 300 0 SHEET 2 AA7 2 TYR A 306 ASP A 309 -1 O ILE A 307 N TYR A 299 SHEET 1 AA8 5 SER A 425 GLN A 429 0 SHEET 2 AA8 5 GLN A 432 LEU A 440 -1 O GLN A 432 N GLN A 429 SHEET 3 AA8 5 VAL A 388 PRO A 396 -1 N ASP A 395 O LEU A 433 SHEET 4 AA8 5 LEU A 474 THR A 476 -1 O THR A 476 N THR A 392 SHEET 5 AA8 5 VAL A 484 ASP A 485 -1 O VAL A 484 N LEU A 475 SHEET 1 AA9 4 LYS A 546 PRO A 552 0 SHEET 2 AA9 4 ALA A 495 ARG A 505 -1 N VAL A 498 O PHE A 549 SHEET 3 AA9 4 THR A 590 GLN A 597 1 O LEU A 591 N TYR A 499 SHEET 4 AA9 4 PHE A 578 ASP A 585 -1 N SER A 581 O THR A 594 SHEET 1 AB1 3 GLN A 535 LYS A 540 0 SHEET 2 AB1 3 THR A 515 ARG A 522 -1 N LEU A 516 O LEU A 539 SHEET 3 AB1 3 TYR A 563 SER A 567 -1 O VAL A 564 N GLN A 521 SHEET 1 AB2 5 GLN A 647 ALA A 648 0 SHEET 2 AB2 5 GLY A 599 THR A 606 -1 N PHE A 600 O GLN A 647 SHEET 3 AB2 5 ILE A 722 ASP A 729 1 O LYS A 727 N LYS A 605 SHEET 4 AB2 5 LYS A 709 THR A 716 -1 N THR A 716 O ILE A 722 SHEET 5 AB2 5 GLN A 700 VAL A 706 -1 N VAL A 706 O LYS A 709 SHEET 1 AB3 6 ALA A 635 ALA A 640 0 SHEET 2 AB3 6 GLN A 621 TYR A 627 -1 N GLN A 626 O SER A 636 SHEET 3 AB3 6 GLY A 652 ALA A 660 -1 O TYR A 653 N TYR A 627 SHEET 4 AB3 6 THR A 671 LEU A 676 -1 O PHE A 674 N TYR A 654 SHEET 5 AB3 6 TRP A 682 THR A 687 -1 O GLY A 686 N LEU A 673 SHEET 6 AB3 6 ASN A 690 VAL A 696 -1 O SER A 695 N TYR A 684 SHEET 1 AB4 3 GLN A 775 ALA A 776 0 SHEET 2 AB4 3 SER A 734 GLN A 742 -1 N VAL A 739 O GLN A 775 SHEET 3 AB4 3 LEU A 781 VAL A 782 -1 O LEU A 781 N MET A 735 SHEET 1 AB5 5 GLN A 775 ALA A 776 0 SHEET 2 AB5 5 SER A 734 GLN A 742 -1 N VAL A 739 O GLN A 775 SHEET 3 AB5 5 THR A 842 ILE A 848 1 O ALA A 847 N ILE A 740 SHEET 4 AB5 5 TYR A 834 ASP A 839 -1 N ALA A 837 O THR A 844 SHEET 5 AB5 5 SER A 830 LYS A 831 -1 N LYS A 831 O TYR A 834 SHEET 1 AB6 6 GLU A 764 THR A 767 0 SHEET 2 AB6 6 ALA A 753 PRO A 758 -1 N LEU A 756 O GLU A 764 SHEET 3 AB6 6 THR A 786 LYS A 793 -1 O THR A 788 N GLN A 757 SHEET 4 AB6 6 ILE A 805 VAL A 809 -1 O ILE A 807 N TYR A 787 SHEET 5 AB6 6 ALA A 816 ILE A 820 -1 O THR A 819 N ALA A 806 SHEET 6 AB6 6 GLU A 823 LEU A 825 -1 O LEU A 825 N VAL A 818 LINK NZ LYS A 108 CG ASN A 470 1555 1555 1.28 LINK NZ LYS A 502 CG ASN A 595 1555 1555 1.26 LINK NZ LYS A 741 CG ASN A 849 1555 1555 1.28 LINK OG SER A 145 MG MG A 901 1555 1555 2.10 LINK OG SER A 147 MG MG A 901 1555 1555 2.09 LINK OG1 THR A 229 MG MG A 901 1555 1555 2.09 LINK OXT LEU A 857 MG MG A 901 1555 2656 1.94 LINK MG MG A 901 O HOH A1019 1555 1555 2.07 LINK MG MG A 901 O HOH A1074 1555 1555 2.09 SITE 1 AC1 6 SER A 145 SER A 147 THR A 229 LEU A 857 SITE 2 AC1 6 HOH A1019 HOH A1074 CRYST1 81.045 110.023 128.344 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007792 0.00000