HEADER HYDROLASE 06-MAR-20 6M4B TITLE 1510-N MEMBRANE-BOUND STOMATIN-SPECIFIC PROTEASE S97A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-BOUND PROTEASE PH1510; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NFED HOMOLOG,STOMATIN OPERON PARTNER PROTEIN,STOPP; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII (STRAIN ATCC 700860 / DSM SOURCE 3 12428 / JCM 9974 / NBRC 100139 / OT-3); SOURCE 4 ORGANISM_TAXID: 70601; SOURCE 5 STRAIN: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3; SOURCE 6 GENE: PH1510; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS ALPHA/BETA MOTIF, PROTEASE, MEMBRANE PROTEIN STOMATIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YOKOYAMA,K.SUZUKI REVDAT 2 29-NOV-23 6M4B 1 REMARK REVDAT 1 10-JUN-20 6M4B 0 JRNL AUTH H.YOKOYAMA,K.SUZUKI,K.HARA,I.MATSUI,H.HASHIMOTO JRNL TITL INACTIVE DIMERIC STRUCTURE OF THE PROTEASE DOMAIN OF JRNL TITL 2 STOMATIN OPERON PARTNER PROTEIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 76 515 2020 JRNL REFN ESSN 1399-0047 JRNL DOI 10.1107/S2059798320005021 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YOKOYAMA,D.KOBAYASHI,N.TAKIZAWA,S.FUJII,I.MATSUI REMARK 1 TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF A THERMOSTABLE REMARK 1 TITL 2 MEMBRANE-BOUND STOMATIN-SPECIFIC PROTEASE. REMARK 1 REF J SYNCHROTRON RADIAT V. 20 933 2013 REMARK 1 REFN ESSN 1600-5775 REMARK 1 PMID 24121343 REMARK 1 DOI 10.1107/S0909049513021328 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2411 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1575 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.274 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3240 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3176 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4406 ; 1.751 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7304 ; 1.289 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 6.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;35.737 ;24.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;15.864 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.277 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3654 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 686 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 19 225 B 19 225 25924 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6M4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M AMMONIUM SULFATE, 27% PEG4000, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.69667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.84833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.27250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.42417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.12083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 PHE A 226 REMARK 465 LYS A 227 REMARK 465 ASP A 228 REMARK 465 LYS A 229 REMARK 465 LEU A 230 REMARK 465 ILE A 231 REMARK 465 SER A 232 REMARK 465 TYR A 233 REMARK 465 ILE A 234 REMARK 465 THR A 235 REMARK 465 ASP A 236 REMARK 465 LEU A 237 REMARK 465 GLU A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 MET B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 ILE B 18 REMARK 465 PHE B 226 REMARK 465 LYS B 227 REMARK 465 ASP B 228 REMARK 465 LYS B 229 REMARK 465 LEU B 230 REMARK 465 ILE B 231 REMARK 465 SER B 232 REMARK 465 TYR B 233 REMARK 465 ILE B 234 REMARK 465 THR B 235 REMARK 465 ASP B 236 REMARK 465 LEU B 237 REMARK 465 GLU B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 174 CG GLU B 174 CD 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 199 CG - SD - CE ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP B 68 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 95 78.13 -118.21 REMARK 500 ALA A 97 -126.59 55.74 REMARK 500 ALA A 119 72.32 57.90 REMARK 500 ASN A 129 -177.78 -69.27 REMARK 500 ASN A 206 58.96 32.91 REMARK 500 ALA B 95 78.60 -116.17 REMARK 500 ALA B 97 -126.40 54.50 REMARK 500 ALA B 119 71.11 56.38 REMARK 500 ASN B 129 -97.53 -128.25 REMARK 500 ASN B 206 56.65 28.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 DBREF 6M4B A 16 236 UNP O59179 STOPP_PYRHO 16 236 DBREF 6M4B B 16 236 UNP O59179 STOPP_PYRHO 16 236 SEQADV 6M4B MET A 15 UNP O59179 INITIATING METHIONINE SEQADV 6M4B ALA A 97 UNP O59179 SER 97 ENGINEERED MUTATION SEQADV 6M4B LEU A 237 UNP O59179 EXPRESSION TAG SEQADV 6M4B GLU A 238 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS A 239 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS A 240 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS A 241 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS A 242 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS A 243 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS A 244 UNP O59179 EXPRESSION TAG SEQADV 6M4B MET B 15 UNP O59179 INITIATING METHIONINE SEQADV 6M4B ALA B 97 UNP O59179 SER 97 ENGINEERED MUTATION SEQADV 6M4B LEU B 237 UNP O59179 EXPRESSION TAG SEQADV 6M4B GLU B 238 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS B 239 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS B 240 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS B 241 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS B 242 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS B 243 UNP O59179 EXPRESSION TAG SEQADV 6M4B HIS B 244 UNP O59179 EXPRESSION TAG SEQRES 1 A 230 MET SER PRO ILE LEU ALA LYS ASN ILE VAL TYR VAL ALA SEQRES 2 A 230 GLN ILE LYS GLY GLN ILE THR SER TYR THR TYR ASP GLN SEQRES 3 A 230 PHE ASP ARG TYR ILE THR ILE ALA GLU GLN ASP ASN ALA SEQRES 4 A 230 GLU ALA ILE ILE ILE GLU LEU ASP THR PRO GLY GLY ARG SEQRES 5 A 230 ALA ASP ALA MET MET ASN ILE VAL GLN ARG ILE GLN GLN SEQRES 6 A 230 SER LYS ILE PRO VAL ILE ILE TYR VAL TYR PRO PRO GLY SEQRES 7 A 230 ALA SER ALA ALA ALA ALA GLY THR TYR ILE ALA LEU GLY SEQRES 8 A 230 SER HIS LEU ILE ALA MET ALA PRO GLY THR SER ILE GLY SEQRES 9 A 230 ALA CYS ARG PRO ILE LEU GLY TYR SER GLN ASN GLY SER SEQRES 10 A 230 ILE ILE GLU ALA PRO PRO LYS ILE THR ASN TYR PHE ILE SEQRES 11 A 230 ALA TYR ILE LYS SER LEU ALA GLN GLU SER GLY ARG ASN SEQRES 12 A 230 ALA THR ILE ALA GLU GLU PHE ILE THR LYS ASP LEU SER SEQRES 13 A 230 LEU THR PRO GLU GLU ALA LEU LYS TYR GLY VAL ILE GLU SEQRES 14 A 230 VAL VAL ALA ARG ASP ILE ASN GLU LEU LEU LYS LYS SER SEQRES 15 A 230 ASN GLY MET LYS THR LYS ILE PRO VAL ASN GLY ARG TYR SEQRES 16 A 230 VAL THR LEU ASN PHE THR ASN VAL GLU VAL ARG TYR LEU SEQRES 17 A 230 ALA PRO SER PHE LYS ASP LYS LEU ILE SER TYR ILE THR SEQRES 18 A 230 ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 230 MET SER PRO ILE LEU ALA LYS ASN ILE VAL TYR VAL ALA SEQRES 2 B 230 GLN ILE LYS GLY GLN ILE THR SER TYR THR TYR ASP GLN SEQRES 3 B 230 PHE ASP ARG TYR ILE THR ILE ALA GLU GLN ASP ASN ALA SEQRES 4 B 230 GLU ALA ILE ILE ILE GLU LEU ASP THR PRO GLY GLY ARG SEQRES 5 B 230 ALA ASP ALA MET MET ASN ILE VAL GLN ARG ILE GLN GLN SEQRES 6 B 230 SER LYS ILE PRO VAL ILE ILE TYR VAL TYR PRO PRO GLY SEQRES 7 B 230 ALA SER ALA ALA ALA ALA GLY THR TYR ILE ALA LEU GLY SEQRES 8 B 230 SER HIS LEU ILE ALA MET ALA PRO GLY THR SER ILE GLY SEQRES 9 B 230 ALA CYS ARG PRO ILE LEU GLY TYR SER GLN ASN GLY SER SEQRES 10 B 230 ILE ILE GLU ALA PRO PRO LYS ILE THR ASN TYR PHE ILE SEQRES 11 B 230 ALA TYR ILE LYS SER LEU ALA GLN GLU SER GLY ARG ASN SEQRES 12 B 230 ALA THR ILE ALA GLU GLU PHE ILE THR LYS ASP LEU SER SEQRES 13 B 230 LEU THR PRO GLU GLU ALA LEU LYS TYR GLY VAL ILE GLU SEQRES 14 B 230 VAL VAL ALA ARG ASP ILE ASN GLU LEU LEU LYS LYS SER SEQRES 15 B 230 ASN GLY MET LYS THR LYS ILE PRO VAL ASN GLY ARG TYR SEQRES 16 B 230 VAL THR LEU ASN PHE THR ASN VAL GLU VAL ARG TYR LEU SEQRES 17 B 230 ALA PRO SER PHE LYS ASP LYS LEU ILE SER TYR ILE THR SEQRES 18 B 230 ASP LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 B 301 5 HET SO4 B 302 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *53(H2 O) HELIX 1 AA1 THR A 34 ASP A 51 1 18 HELIX 2 AA2 ARG A 66 GLN A 79 1 14 HELIX 3 AA3 ALA A 97 GLY A 105 1 9 HELIX 4 AA4 PRO A 136 SER A 154 1 19 HELIX 5 AA5 ASN A 157 LYS A 167 1 11 HELIX 6 AA6 THR A 172 TYR A 179 1 8 HELIX 7 AA7 ASP A 188 ASN A 197 1 10 HELIX 8 AA8 THR B 34 ASP B 51 1 18 HELIX 9 AA9 ARG B 66 SER B 80 1 15 HELIX 10 AB1 ALA B 97 GLY B 105 1 9 HELIX 11 AB2 PRO B 136 SER B 154 1 19 HELIX 12 AB3 ASN B 157 LYS B 167 1 11 HELIX 13 AB4 THR B 172 TYR B 179 1 8 HELIX 14 AB5 ASP B 188 ASN B 197 1 10 SHEET 1 AA1 6 VAL A 184 VAL A 185 0 SHEET 2 AA1 6 LEU A 108 MET A 111 1 N MET A 111 O VAL A 184 SHEET 3 AA1 6 VAL A 84 VAL A 88 1 N VAL A 88 O ALA A 110 SHEET 4 AA1 6 ALA A 55 ASP A 61 1 N ILE A 58 O TYR A 87 SHEET 5 AA1 6 ILE A 23 LYS A 30 1 N ALA A 27 O GLU A 59 SHEET 6 AA1 6 GLU A 218 TYR A 221 1 O ARG A 220 N VAL A 24 SHEET 1 AA2 3 SER A 94 ALA A 96 0 SHEET 2 AA2 3 SER A 116 GLY A 118 1 O SER A 116 N ALA A 95 SHEET 3 AA2 3 SER A 170 LEU A 171 -1 O LEU A 171 N ILE A 117 SHEET 1 AA3 2 ILE A 123 TYR A 126 0 SHEET 2 AA3 2 ILE A 132 GLU A 134 -1 O ILE A 133 N GLY A 125 SHEET 1 AA4 6 VAL B 184 VAL B 185 0 SHEET 2 AA4 6 LEU B 108 MET B 111 1 N MET B 111 O VAL B 184 SHEET 3 AA4 6 VAL B 84 VAL B 88 1 N VAL B 88 O ALA B 110 SHEET 4 AA4 6 ALA B 55 ASP B 61 1 N ILE B 58 O TYR B 87 SHEET 5 AA4 6 ASN B 22 LYS B 30 1 N ALA B 27 O GLU B 59 SHEET 6 AA4 6 VAL B 217 TYR B 221 1 O GLU B 218 N ASN B 22 SHEET 1 AA5 3 SER B 94 ALA B 96 0 SHEET 2 AA5 3 SER B 116 GLY B 118 1 O SER B 116 N ALA B 95 SHEET 3 AA5 3 SER B 170 LEU B 171 -1 O LEU B 171 N ILE B 117 SHEET 1 AA6 2 ILE B 123 TYR B 126 0 SHEET 2 AA6 2 ILE B 132 GLU B 134 -1 O ILE B 133 N GLY B 125 CISPEP 1 TYR A 89 PRO A 90 0 3.74 CISPEP 2 TYR B 89 PRO B 90 0 1.05 SITE 1 AC1 4 LYS A 200 LYS B 138 LYS B 167 HOH B 413 SITE 1 AC2 6 GLU A 54 ASN A 213 HOH A 306 LYS B 178 SITE 2 AC2 6 ARG B 208 HOH B 401 CRYST1 124.731 124.731 56.545 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008017 0.004629 0.000000 0.00000 SCALE2 0.000000 0.009258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017685 0.00000