HEADER CELL CYCLE 07-MAR-20 6M4I TITLE STRUCTURE OF CENP-E MOTOR DOMAIN AT 1.9 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROMERE-ASSOCIATED PROTEIN E; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINESIN MOTOR; COMPND 5 SYNONYM: CENTROMERE PROTEIN E,CENP-E,KINESIN-7,KINESIN-RELATED COMPND 6 PROTEIN CENPE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CENPE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINESIN, MOTOR DOMAIN, ADP BINDING, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIBUYA,H.YOKOYAMA REVDAT 2 29-NOV-23 6M4I 1 REMARK REVDAT 1 10-MAR-21 6M4I 0 JRNL AUTH A.SHIBUYA,N.OGO,J.SAWADA,A.ASAI,H.YOKOYAMA JRNL TITL STRUCTURE AND COMPARISON OF THE MOTOR DOMAIN JRNL TITL 2 OFCENTROMERE-ASSOCIATED PROTEIN E JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 77 280 2021 JRNL REFN ESSN 1399-0047 JRNL DOI 10.1107/S2059798321000176 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3948 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 442 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.497 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5065 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4712 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6846 ; 1.559 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10931 ; 1.299 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 611 ; 7.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;32.604 ;22.251 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 910 ;15.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.048 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5577 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1058 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 339 B 4 339 9592 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6M4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 95.095 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : 0.83000 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1T5C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL (PH 7.5), PEG 3350, PIPES REMARK 280 -NAOH (PH 6.8), NACL, MGCL2, EGTA-NAOH, TCEP, SUCROSE, CENP-E, REMARK 280 CIBA, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.41950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 ASN A -4 REMARK 465 HIS A -3 REMARK 465 LYS A -2 REMARK 465 VAL A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 SER A 18 REMARK 465 ARG A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 21 REMARK 465 SER A 22 REMARK 465 LEU A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 25 REMARK 465 THR A 26 REMARK 465 ARG A 160 REMARK 465 GLY A 192 REMARK 465 GLU A 193 REMARK 465 THR A 194 REMARK 465 LYS A 195 REMARK 465 MET A 196 REMARK 465 GLY A 217 REMARK 465 GLU A 218 REMARK 465 PRO A 219 REMARK 465 SER A 220 REMARK 465 ASN A 221 REMARK 465 CYS A 222 REMARK 465 GLU A 223 REMARK 465 GLN A 244 REMARK 465 THR A 245 REMARK 465 GLY A 246 REMARK 465 ALA A 247 REMARK 465 ALA A 248 REMARK 465 GLY A 249 REMARK 465 VAL A 250 REMARK 465 ARG A 251 REMARK 465 GLY A 340 REMARK 465 SER A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 MET B -5 REMARK 465 ASN B -4 REMARK 465 HIS B -3 REMARK 465 LYS B -2 REMARK 465 VAL B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ARG B 19 REMARK 465 GLU B 20 REMARK 465 GLU B 21 REMARK 465 SER B 22 REMARK 465 LEU B 23 REMARK 465 GLY B 24 REMARK 465 GLU B 25 REMARK 465 THR B 26 REMARK 465 GLY B 192 REMARK 465 GLU B 193 REMARK 465 THR B 194 REMARK 465 LYS B 195 REMARK 465 MET B 196 REMARK 465 ASN B 197 REMARK 465 GLY B 217 REMARK 465 GLU B 218 REMARK 465 PRO B 219 REMARK 465 SER B 220 REMARK 465 ASN B 221 REMARK 465 CYS B 222 REMARK 465 GLU B 223 REMARK 465 GLY B 224 REMARK 465 GLN B 244 REMARK 465 THR B 245 REMARK 465 GLY B 246 REMARK 465 ALA B 247 REMARK 465 ALA B 248 REMARK 465 GLY B 249 REMARK 465 VAL B 250 REMARK 465 ARG B 251 REMARK 465 VAL B 277 REMARK 465 GLY B 278 REMARK 465 GLY B 279 REMARK 465 GLY B 340 REMARK 465 SER B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 54 OD1 ASN A 56 2.05 REMARK 500 O ILE A 291 O HOH A 701 2.08 REMARK 500 NE2 HIS B 111 O HOH B 701 2.11 REMARK 500 CB ILE A 38 O HOH A 733 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 260 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -121.33 54.86 REMARK 500 ASN A 35 63.44 30.64 REMARK 500 HIS A 102 84.12 -150.23 REMARK 500 GLU A 137 18.48 59.45 REMARK 500 ASP A 157 -168.62 -104.25 REMARK 500 GLU A 254 64.53 -100.33 REMARK 500 PHE A 313 -71.34 -92.01 REMARK 500 ASN B 35 -131.65 60.52 REMARK 500 ASN B 36 22.22 80.03 REMARK 500 ASN B 36 41.79 -103.53 REMARK 500 GLU B 137 19.36 58.96 REMARK 500 ASP B 157 -169.69 -104.83 REMARK 500 GLU B 254 63.48 -104.70 REMARK 500 PHE B 313 -71.72 -92.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 93 OG1 REMARK 620 2 ADP A 600 O2B 90.6 REMARK 620 3 HOH A 707 O 79.9 104.0 REMARK 620 4 HOH A 711 O 92.0 77.4 171.7 REMARK 620 5 HOH A 714 O 172.0 93.6 92.5 95.6 REMARK 620 6 HOH A 779 O 86.7 171.8 83.2 94.9 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 93 OG1 REMARK 620 2 ADP B 600 O2B 86.9 REMARK 620 3 HOH B 706 O 82.0 96.3 REMARK 620 4 HOH B 717 O 87.1 83.5 169.1 REMARK 620 5 HOH B 719 O 168.1 97.6 86.6 104.3 REMARK 620 6 HOH B 739 O 93.7 170.3 93.4 86.8 83.7 REMARK 620 N 1 2 3 4 5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE CONFLICT A300P IS BASED ON REFERENCE CAA78727 (PUBMED REMARK 999 1406971). DBREF 6M4I A 1 339 UNP Q02224 CENPE_HUMAN 1 339 DBREF 6M4I B 1 339 UNP Q02224 CENPE_HUMAN 1 339 SEQADV 6M4I MET A -5 UNP Q02224 INITIATING METHIONINE SEQADV 6M4I ASN A -4 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A -3 UNP Q02224 EXPRESSION TAG SEQADV 6M4I LYS A -2 UNP Q02224 EXPRESSION TAG SEQADV 6M4I VAL A -1 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A 0 UNP Q02224 EXPRESSION TAG SEQADV 6M4I PRO A 300 UNP Q02224 ALA 300 CONFLICT SEQADV 6M4I GLY A 340 UNP Q02224 EXPRESSION TAG SEQADV 6M4I SER A 341 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A 342 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A 343 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A 344 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A 345 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A 346 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS A 347 UNP Q02224 EXPRESSION TAG SEQADV 6M4I MET B -5 UNP Q02224 INITIATING METHIONINE SEQADV 6M4I ASN B -4 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B -3 UNP Q02224 EXPRESSION TAG SEQADV 6M4I LYS B -2 UNP Q02224 EXPRESSION TAG SEQADV 6M4I VAL B -1 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B 0 UNP Q02224 EXPRESSION TAG SEQADV 6M4I PRO B 300 UNP Q02224 ALA 300 CONFLICT SEQADV 6M4I GLY B 340 UNP Q02224 EXPRESSION TAG SEQADV 6M4I SER B 341 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B 342 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B 343 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B 344 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B 345 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B 346 UNP Q02224 EXPRESSION TAG SEQADV 6M4I HIS B 347 UNP Q02224 EXPRESSION TAG SEQRES 1 A 353 MET ASN HIS LYS VAL HIS MET ALA GLU GLU GLY ALA VAL SEQRES 2 A 353 ALA VAL CYS VAL ARG VAL ARG PRO LEU ASN SER ARG GLU SEQRES 3 A 353 GLU SER LEU GLY GLU THR ALA GLN VAL TYR TRP LYS THR SEQRES 4 A 353 ASP ASN ASN VAL ILE TYR GLN VAL ASP GLY SER LYS SER SEQRES 5 A 353 PHE ASN PHE ASP ARG VAL PHE HIS GLY ASN GLU THR THR SEQRES 6 A 353 LYS ASN VAL TYR GLU GLU ILE ALA ALA PRO ILE ILE ASP SEQRES 7 A 353 SER ALA ILE GLN GLY TYR ASN GLY THR ILE PHE ALA TYR SEQRES 8 A 353 GLY GLN THR ALA SER GLY LYS THR TYR THR MET MET GLY SEQRES 9 A 353 SER GLU ASP HIS LEU GLY VAL ILE PRO ARG ALA ILE HIS SEQRES 10 A 353 ASP ILE PHE GLN LYS ILE LYS LYS PHE PRO ASP ARG GLU SEQRES 11 A 353 PHE LEU LEU ARG VAL SER TYR MET GLU ILE TYR ASN GLU SEQRES 12 A 353 THR ILE THR ASP LEU LEU CYS GLY THR GLN LYS MET LYS SEQRES 13 A 353 PRO LEU ILE ILE ARG GLU ASP VAL ASN ARG ASN VAL TYR SEQRES 14 A 353 VAL ALA ASP LEU THR GLU GLU VAL VAL TYR THR SER GLU SEQRES 15 A 353 MET ALA LEU LYS TRP ILE THR LYS GLY GLU LYS SER ARG SEQRES 16 A 353 HIS TYR GLY GLU THR LYS MET ASN GLN ARG SER SER ARG SEQRES 17 A 353 SER HIS THR ILE PHE ARG MET ILE LEU GLU SER ARG GLU SEQRES 18 A 353 LYS GLY GLU PRO SER ASN CYS GLU GLY SER VAL LYS VAL SEQRES 19 A 353 SER HIS LEU ASN LEU VAL ASP LEU ALA GLY SER GLU ARG SEQRES 20 A 353 ALA ALA GLN THR GLY ALA ALA GLY VAL ARG LEU LYS GLU SEQRES 21 A 353 GLY CYS ASN ILE ASN ARG SER LEU PHE ILE LEU GLY GLN SEQRES 22 A 353 VAL ILE LYS LYS LEU SER ASP GLY GLN VAL GLY GLY PHE SEQRES 23 A 353 ILE ASN TYR ARG ASP SER LYS LEU THR ARG ILE LEU GLN SEQRES 24 A 353 ASN SER LEU GLY GLY ASN PRO LYS THR ARG ILE ILE CYS SEQRES 25 A 353 THR ILE THR PRO VAL SER PHE ASP GLU THR LEU THR ALA SEQRES 26 A 353 LEU GLN PHE ALA SER THR ALA LYS TYR MET LYS ASN THR SEQRES 27 A 353 PRO TYR VAL ASN GLU VAL SER GLY SER HIS HIS HIS HIS SEQRES 28 A 353 HIS HIS SEQRES 1 B 353 MET ASN HIS LYS VAL HIS MET ALA GLU GLU GLY ALA VAL SEQRES 2 B 353 ALA VAL CYS VAL ARG VAL ARG PRO LEU ASN SER ARG GLU SEQRES 3 B 353 GLU SER LEU GLY GLU THR ALA GLN VAL TYR TRP LYS THR SEQRES 4 B 353 ASP ASN ASN VAL ILE TYR GLN VAL ASP GLY SER LYS SER SEQRES 5 B 353 PHE ASN PHE ASP ARG VAL PHE HIS GLY ASN GLU THR THR SEQRES 6 B 353 LYS ASN VAL TYR GLU GLU ILE ALA ALA PRO ILE ILE ASP SEQRES 7 B 353 SER ALA ILE GLN GLY TYR ASN GLY THR ILE PHE ALA TYR SEQRES 8 B 353 GLY GLN THR ALA SER GLY LYS THR TYR THR MET MET GLY SEQRES 9 B 353 SER GLU ASP HIS LEU GLY VAL ILE PRO ARG ALA ILE HIS SEQRES 10 B 353 ASP ILE PHE GLN LYS ILE LYS LYS PHE PRO ASP ARG GLU SEQRES 11 B 353 PHE LEU LEU ARG VAL SER TYR MET GLU ILE TYR ASN GLU SEQRES 12 B 353 THR ILE THR ASP LEU LEU CYS GLY THR GLN LYS MET LYS SEQRES 13 B 353 PRO LEU ILE ILE ARG GLU ASP VAL ASN ARG ASN VAL TYR SEQRES 14 B 353 VAL ALA ASP LEU THR GLU GLU VAL VAL TYR THR SER GLU SEQRES 15 B 353 MET ALA LEU LYS TRP ILE THR LYS GLY GLU LYS SER ARG SEQRES 16 B 353 HIS TYR GLY GLU THR LYS MET ASN GLN ARG SER SER ARG SEQRES 17 B 353 SER HIS THR ILE PHE ARG MET ILE LEU GLU SER ARG GLU SEQRES 18 B 353 LYS GLY GLU PRO SER ASN CYS GLU GLY SER VAL LYS VAL SEQRES 19 B 353 SER HIS LEU ASN LEU VAL ASP LEU ALA GLY SER GLU ARG SEQRES 20 B 353 ALA ALA GLN THR GLY ALA ALA GLY VAL ARG LEU LYS GLU SEQRES 21 B 353 GLY CYS ASN ILE ASN ARG SER LEU PHE ILE LEU GLY GLN SEQRES 22 B 353 VAL ILE LYS LYS LEU SER ASP GLY GLN VAL GLY GLY PHE SEQRES 23 B 353 ILE ASN TYR ARG ASP SER LYS LEU THR ARG ILE LEU GLN SEQRES 24 B 353 ASN SER LEU GLY GLY ASN PRO LYS THR ARG ILE ILE CYS SEQRES 25 B 353 THR ILE THR PRO VAL SER PHE ASP GLU THR LEU THR ALA SEQRES 26 B 353 LEU GLN PHE ALA SER THR ALA LYS TYR MET LYS ASN THR SEQRES 27 B 353 PRO TYR VAL ASN GLU VAL SER GLY SER HIS HIS HIS HIS SEQRES 28 B 353 HIS HIS HET ADP A 600 27 HET MG A 601 1 HET ADP B 600 27 HET MG B 601 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *140(H2 O) HELIX 1 AA1 THR A 58 ALA A 67 1 10 HELIX 2 AA2 ALA A 67 GLN A 76 1 10 HELIX 3 AA3 GLY A 91 MET A 97 1 7 HELIX 4 AA4 GLY A 104 ILE A 117 1 14 HELIX 5 AA5 LYS A 118 PHE A 120 5 3 HELIX 6 AA6 THR A 174 TYR A 191 1 18 HELIX 7 AA7 GLN A 198 ARG A 202 5 5 HELIX 8 AA8 GLY A 238 ALA A 242 5 5 HELIX 9 AA9 ASN A 259 ASP A 274 1 16 HELIX 10 AB1 VAL A 277 ILE A 281 5 5 HELIX 11 AB2 ASN A 282 ASP A 285 5 4 HELIX 12 AB3 SER A 286 LEU A 292 1 7 HELIX 13 AB4 GLN A 293 LEU A 296 5 4 HELIX 14 AB5 PHE A 313 LYS A 327 1 15 HELIX 15 AB6 THR B 58 ALA B 67 1 10 HELIX 16 AB7 ALA B 67 GLN B 76 1 10 HELIX 17 AB8 GLY B 91 MET B 97 1 7 HELIX 18 AB9 GLY B 104 ILE B 117 1 14 HELIX 19 AC1 LYS B 118 PHE B 120 5 3 HELIX 20 AC2 THR B 174 TYR B 191 1 18 HELIX 21 AC3 GLN B 198 ARG B 202 5 5 HELIX 22 AC4 GLY B 238 ALA B 242 5 5 HELIX 23 AC5 ASN B 259 ASP B 274 1 16 HELIX 24 AC6 ASN B 282 ASP B 285 5 4 HELIX 25 AC7 SER B 286 LEU B 292 1 7 HELIX 26 AC8 GLN B 293 LEU B 296 5 4 HELIX 27 AC9 PHE B 313 LYS B 327 1 15 SHEET 1 AA1 8 ARG A 51 PHE A 53 0 SHEET 2 AA1 8 VAL A 7 VAL A 13 1 N VAL A 13 O PHE A 53 SHEET 3 AA1 8 LYS A 301 ILE A 308 1 O CYS A 306 N ARG A 12 SHEET 4 AA1 8 GLY A 80 TYR A 85 1 N PHE A 83 O ILE A 305 SHEET 5 AA1 8 VAL A 226 ASP A 235 1 O VAL A 234 N ILE A 82 SHEET 6 AA1 8 HIS A 204 GLU A 215 -1 N MET A 209 O LEU A 231 SHEET 7 AA1 8 ARG A 123 TYR A 135 -1 N GLU A 124 O ARG A 214 SHEET 8 AA1 8 GLU A 170 VAL A 172 -1 O GLU A 170 N VAL A 129 SHEET 1 AA2 5 THR A 138 ASP A 141 0 SHEET 2 AA2 5 ARG A 123 TYR A 135 -1 N GLU A 133 O THR A 140 SHEET 3 AA2 5 HIS A 204 GLU A 215 -1 O ARG A 214 N GLU A 124 SHEET 4 AA2 5 VAL A 226 ASP A 235 -1 O LEU A 231 N MET A 209 SHEET 5 AA2 5 GLU A 337 VAL A 338 -1 O VAL A 338 N VAL A 226 SHEET 1 AA3 3 TRP A 31 ASP A 34 0 SHEET 2 AA3 3 VAL A 37 GLN A 40 -1 O TYR A 39 N LYS A 32 SHEET 3 AA3 3 SER A 46 ASN A 48 -1 O PHE A 47 N ILE A 38 SHEET 1 AA4 2 GLY A 98 SER A 99 0 SHEET 2 AA4 2 HIS A 102 LEU A 103 -1 O HIS A 102 N SER A 99 SHEET 1 AA5 2 ILE A 154 GLU A 156 0 SHEET 2 AA5 2 VAL A 162 VAL A 164 -1 O TYR A 163 N ARG A 155 SHEET 1 AA6 8 ARG B 51 PHE B 53 0 SHEET 2 AA6 8 VAL B 7 VAL B 13 1 N VAL B 11 O PHE B 53 SHEET 3 AA6 8 LYS B 301 ILE B 308 1 O CYS B 306 N CYS B 10 SHEET 4 AA6 8 GLY B 80 GLY B 86 1 N PHE B 83 O ILE B 305 SHEET 5 AA6 8 VAL B 226 ASP B 235 1 O VAL B 234 N ILE B 82 SHEET 6 AA6 8 HIS B 204 GLU B 215 -1 N MET B 209 O LEU B 231 SHEET 7 AA6 8 ARG B 123 TYR B 135 -1 N GLU B 124 O ARG B 214 SHEET 8 AA6 8 GLU B 170 VAL B 172 -1 O GLU B 170 N VAL B 129 SHEET 1 AA7 5 THR B 138 ASP B 141 0 SHEET 2 AA7 5 ARG B 123 TYR B 135 -1 N GLU B 133 O THR B 140 SHEET 3 AA7 5 HIS B 204 GLU B 215 -1 O ARG B 214 N GLU B 124 SHEET 4 AA7 5 VAL B 226 ASP B 235 -1 O LEU B 231 N MET B 209 SHEET 5 AA7 5 GLU B 337 VAL B 338 -1 O VAL B 338 N VAL B 226 SHEET 1 AA8 3 TRP B 31 ASP B 34 0 SHEET 2 AA8 3 VAL B 37 GLN B 40 -1 O TYR B 39 N LYS B 32 SHEET 3 AA8 3 SER B 46 ASN B 48 -1 O PHE B 47 N ILE B 38 SHEET 1 AA9 2 GLY B 98 SER B 99 0 SHEET 2 AA9 2 HIS B 102 LEU B 103 -1 O HIS B 102 N SER B 99 SHEET 1 AB1 2 ILE B 154 GLU B 156 0 SHEET 2 AB1 2 VAL B 162 VAL B 164 -1 O TYR B 163 N ARG B 155 LINK OG1 THR A 93 MG MG A 601 1555 1555 2.14 LINK O2B ADP A 600 MG MG A 601 1555 1555 1.97 LINK MG MG A 601 O HOH A 707 1555 1555 2.19 LINK MG MG A 601 O HOH A 711 1555 1555 2.15 LINK MG MG A 601 O HOH A 714 1555 1555 2.18 LINK MG MG A 601 O HOH A 779 1555 1555 2.09 LINK OG1 THR B 93 MG MG B 601 1555 1555 2.01 LINK O2B ADP B 600 MG MG B 601 1555 1555 2.11 LINK MG MG B 601 O HOH B 706 1555 1555 2.10 LINK MG MG B 601 O HOH B 717 1555 1555 1.90 LINK MG MG B 601 O HOH B 719 1555 1555 1.99 LINK MG MG B 601 O HOH B 739 1555 1555 2.20 CRYST1 96.825 82.839 49.372 90.00 100.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010328 0.000000 0.001979 0.00000 SCALE2 0.000000 0.012072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020623 0.00000