HEADER OXIDOREDUCTASE 09-MAR-20 6M4S TITLE CRYSTAL STRUCTURE ANALYSIS OF THE CYTOCHROME P450 CYP-SB21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 HYDROXYLASE SB21; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYP-SB21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NONOMURAEA DIETZIAE; SOURCE 3 ORGANISM_TAXID: 65515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CYTOCHROME P450, CYP-SB21, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.W.LI,S.Y.LI REVDAT 2 29-NOV-23 6M4S 1 REMARK REVDAT 1 03-FEB-21 6M4S 0 JRNL AUTH F.LI,L.MA,X.ZHANG,J.CHEN,F.QI,Y.HUANG,Z.QU,L.YAO,W.ZHANG, JRNL AUTH 2 E.S.KIM,S.LI JRNL TITL STRUCTURE-GUIDED MANIPULATION OF THE REGIOSELECTIVITY OF THE JRNL TITL 2 CYCLOSPORINE A HYDROXYLASE CYP-SB21 FROM SEBEKIA BENIHANA . JRNL REF SYNTH SYST BIOTECHNOL V. 5 236 2020 JRNL REFN ISSN 2405-805X JRNL PMID 32775708 JRNL DOI 10.1016/J.SYNBIO.2020.07.004 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 30220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1706 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3192 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3060 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4346 ; 1.958 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7012 ; 1.146 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 6.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;31.445 ;21.702 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;13.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;16.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3523 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 682 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6M4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 52.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5NWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, PEG 8000, CA-ACETATE, PH REMARK 280 6.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.54600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 ILE A 65 REMARK 465 PRO A 66 REMARK 465 GLY A 67 REMARK 465 GLY A 68 REMARK 465 ASP A 69 REMARK 465 ILE A 70 REMARK 465 PRO A 71 REMARK 465 ASP A 72 REMARK 465 LEU A 73 REMARK 465 ARG A 74 REMARK 465 GLU A 75 REMARK 465 LYS A 76 REMARK 465 LEU A 77 REMARK 465 MET A 78 REMARK 465 LYS A 79 REMARK 465 ALA A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 MET A 12 CG SD CE REMARK 470 ASP A 86 CG OD1 OD2 REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 206 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 333 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 345 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 345 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 -73.56 -58.55 REMARK 500 ALA A 26 74.60 -151.48 REMARK 500 TYR A 149 -54.29 -148.97 REMARK 500 CYS A 287 25.38 -149.77 REMARK 500 HIS A 353 149.29 -171.15 REMARK 500 MET A 396 134.65 -172.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 509 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 358 SG REMARK 620 2 HEM A 509 NA 95.0 REMARK 620 3 HEM A 509 NB 85.3 89.3 REMARK 620 4 HEM A 509 NC 87.2 177.6 89.9 REMARK 620 5 HEM A 509 ND 96.5 90.8 178.2 90.0 REMARK 620 6 HOH A 663 O 172.4 92.5 93.5 85.3 84.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 509 DBREF 6M4S A 1 410 UNP M1GMS4 M1GMS4_9ACTN 1 410 SEQRES 1 A 410 MET ASP THR VAL ASN LEU MET ASP PRO ALA LEU MET THR SEQRES 2 A 410 ASP PRO PHE ARG GLY PHE SER ARG ILE ARG GLU GLU ALA SEQRES 3 A 410 PRO ILE ALA ARG ALA CYS PHE PRO GLY GLN ASP THR PRO SEQRES 4 A 410 ILE TRP LEU VAL THR ARG TYR ASP ASP VAL LYS THR VAL SEQRES 5 A 410 LEU GLY GLU HIS ARG PHE VAL ASN ASN PRO ALA SER ILE SEQRES 6 A 410 PRO GLY GLY ASP ILE PRO ASP LEU ARG GLU LYS LEU MET SEQRES 7 A 410 LYS ALA ARG GLY ILE PRO ASP ASP TYR VAL VAL TYR LEU SEQRES 8 A 410 THR ASP GLY ILE LEU ASP LEU ASP GLY ASP ASP HIS LEU SEQRES 9 A 410 ARG LEU ARG ARG LEU VAL SER ARG ALA PHE THR ALA ARG SEQRES 10 A 410 ARG VAL MET GLU MET ARG PRO ARG VAL GLU GLU ILE SER SEQRES 11 A 410 GLY ARG LEU LEU ASP ALA LEU PRO GLY ASP ARG VAL VAL SEQRES 12 A 410 ASP LEU VAL GLU GLU TYR ALA TYR PRO LEU PRO ILE THR SEQRES 13 A 410 VAL ILE CYS GLU LEU VAL GLY ILE PRO GLU SER ASP ARG SEQRES 14 A 410 PRO LEU TRP ARG GLU TRP GLY ALA LYS MET VAL SER LEU SEQRES 15 A 410 SER PRO GLY ALA MET ALA GLU PRO VAL ILE SER MET VAL SEQRES 16 A 410 ASP TYR ILE HIS ASP LEU ILE PRO ARG ARG ARG ALA ALA SEQRES 17 A 410 PRO ALA ASP ASP LEU LEU THR GLY LEU ILE LYS ALA HIS SEQRES 18 A 410 ASP ASP ASP GLY ASP ARG PHE THR ASP THR GLU LEU ILE SEQRES 19 A 410 THR MET VAL LEU THR LEU VAL LEU ALA GLY HIS GLU THR SEQRES 20 A 410 THR ALA HIS LEU ILE GLY ASN GLY THR ALA ALA LEU LEU SEQRES 21 A 410 THR HIS PRO GLY GLN LEU ALA MET LEU ARG ALA ARG PRO SEQRES 22 A 410 GLU LEU MET PRO ARG ALA VAL HIS GLU LEU MET ARG TRP SEQRES 23 A 410 CYS GLY PRO VAL GLN GLY THR ARG VAL ARG TYR ALA ALA SEQRES 24 A 410 GLU ASP VAL GLU LEU GLY GLY MET THR VAL LYS ARG GLY SEQRES 25 A 410 GLU ALA VAL MET ALA VAL LEU VAL SER ALA ASN TYR ASP SEQRES 26 A 410 PRO ARG ARG PHE GLU ARG PRO ASP ARG LEU ASP LEU THR SEQRES 27 A 410 ARG GLU GLU ASP GLY ARG ARG GLU VAL HIS VAL GLY PHE SEQRES 28 A 410 GLY HIS GLY LEU HIS TYR CYS LEU GLY ALA ALA LEU ALA SEQRES 29 A 410 ARG GLN GLU GLY GLU VAL ALA PHE ALA GLY LEU LEU SER SEQRES 30 A 410 ARG PHE PRO LYS LEU ARG LEU ALA VAL ALA PRO GLU GLU SEQRES 31 A 410 LEU GLU ARG GLN LEU MET PRO ALA SER TRP ARG LEU ALA SEQRES 32 A 410 SER LEU PRO VAL LEU LEU ARG HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET MPD A 506 8 HET MPD A 507 8 HET CA A 508 1 HET HEM A 509 43 HETNAM GOL GLYCEROL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN HEM HEME FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 MPD 2(C6 H14 O2) FORMUL 9 CA CA 2+ FORMUL 10 HEM C34 H32 FE N4 O4 FORMUL 11 HOH *267(H2 O) HELIX 1 AA1 ASP A 14 ALA A 26 1 13 HELIX 2 AA2 ARG A 45 GLU A 55 1 11 HELIX 3 AA3 PRO A 84 ASP A 86 5 3 HELIX 4 AA4 TYR A 87 ASP A 93 1 7 HELIX 5 AA5 GLY A 94 LEU A 98 5 5 HELIX 6 AA6 ASP A 99 PHE A 114 1 16 HELIX 7 AA7 THR A 115 ALA A 136 1 22 HELIX 8 AA8 LEU A 145 TYR A 149 1 5 HELIX 9 AA9 TYR A 151 GLY A 163 1 13 HELIX 10 AB1 PRO A 165 SER A 167 5 3 HELIX 11 AB2 ASP A 168 LEU A 182 1 15 HELIX 12 AB3 MET A 187 ALA A 208 1 22 HELIX 13 AB4 ASP A 212 ALA A 220 1 9 HELIX 14 AB5 THR A 229 HIS A 245 1 17 HELIX 15 AB6 HIS A 245 HIS A 262 1 18 HELIX 16 AB7 HIS A 262 ARG A 272 1 11 HELIX 17 AB8 LEU A 275 GLY A 288 1 14 HELIX 18 AB9 VAL A 318 TYR A 324 1 7 HELIX 19 AC1 HIS A 353 TYR A 357 5 5 HELIX 20 AC2 GLY A 360 PHE A 379 1 20 HELIX 21 AC3 ALA A 387 LEU A 391 5 5 SHEET 1 AA1 6 ASN A 5 LEU A 6 0 SHEET 2 AA1 6 ILE A 28 CYS A 32 1 O CYS A 32 N ASN A 5 SHEET 3 AA1 6 ILE A 40 VAL A 43 -1 O LEU A 42 N ALA A 29 SHEET 4 AA1 6 ALA A 314 ALA A 317 1 O MET A 316 N TRP A 41 SHEET 5 AA1 6 ARG A 296 ALA A 298 -1 N ARG A 296 O VAL A 315 SHEET 6 AA1 6 PHE A 58 VAL A 59 -1 N VAL A 59 O TYR A 297 SHEET 1 AA2 3 VAL A 143 ASP A 144 0 SHEET 2 AA2 3 PRO A 406 LEU A 408 -1 O VAL A 407 N VAL A 143 SHEET 3 AA2 3 ARG A 383 LEU A 384 -1 N ARG A 383 O LEU A 408 SHEET 1 AA3 2 VAL A 302 LEU A 304 0 SHEET 2 AA3 2 MET A 307 VAL A 309 -1 O VAL A 309 N VAL A 302 LINK SG CYS A 358 FE HEM A 509 1555 1555 2.32 LINK OG SER A 399 CA CA A 508 1555 1555 3.07 LINK FE HEM A 509 O HOH A 663 1555 1555 2.38 SITE 1 AC1 8 ARG A 112 ALA A 113 THR A 115 ARG A 117 SITE 2 AC1 8 ARG A 118 GLY A 216 HOH A 648 HOH A 650 SITE 1 AC2 8 ARG A 328 PHE A 329 GLU A 340 ARG A 345 SITE 2 AC2 8 VAL A 347 HOH A 657 HOH A 691 HOH A 741 SITE 1 AC3 10 MET A 284 ARG A 285 TRP A 286 CYS A 287 SITE 2 AC3 10 GLY A 288 VAL A 290 GLN A 291 LEU A 319 SITE 3 AC3 10 VAL A 320 ASN A 323 SITE 1 AC4 3 ARG A 205 ALA A 208 HOH A 601 SITE 1 AC5 2 ARG A 132 THR A 156 SITE 1 AC6 5 HIS A 199 ASP A 200 PRO A 203 ARG A 204 SITE 2 AC6 5 HOH A 762 SITE 1 AC7 6 ARG A 118 ARG A 125 GLU A 160 LEU A 161 SITE 2 AC7 6 ASP A 211 ASP A 212 SITE 1 AC8 2 SER A 399 ARG A 401 SITE 1 AC9 26 ILE A 95 LEU A 96 HIS A 103 ARG A 107 SITE 2 AC9 26 ALA A 243 GLY A 244 THR A 247 THR A 248 SITE 3 AC9 26 MET A 284 PRO A 289 THR A 293 ARG A 294 SITE 4 AC9 26 ARG A 296 GLY A 350 PHE A 351 GLY A 352 SITE 5 AC9 26 LEU A 355 HIS A 356 CYS A 358 LEU A 359 SITE 6 AC9 26 GLY A 360 ALA A 364 GLU A 367 HOH A 610 SITE 7 AC9 26 HOH A 663 HOH A 676 CRYST1 41.636 91.092 52.975 90.00 94.65 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024018 0.000000 0.001953 0.00000 SCALE2 0.000000 0.010978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018939 0.00000