HEADER DNA 09-MAR-20 6M4T TITLE U SHAPED HEAD TO HEAD FOUR-WAY JUNCTION IN D(TTCTGCTGCTGAA) SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*(UD)P*TP*CP*TP*GP*CP*TP*GP*CP*TP*GP*AP*A)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS T:T MISMATCH, CTG REPEAT, FOUR-WAY JUNCTION, TRIAMINOTRIAZINE- KEYWDS 2 ACRIDINE CONJUGATE, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.H.HOU,C.M.CHIEN,R.B.SATANGE,P.C.WU REVDAT 2 27-MAR-24 6M4T 1 LINK REVDAT 1 15-JUL-20 6M4T 0 JRNL AUTH C.M.CHIEN,P.C.WU,R.SATANGE,C.C.CHANG,Z.L.LAI,L.D.HAGLER, JRNL AUTH 2 S.C.ZIMMERMAN,M.H.HOU JRNL TITL STRUCTURAL BASIS FOR TARGETING T:T MISMATCH WITH JRNL TITL 2 TRIAMINOTRIAZINE-ACRIDINE CONJUGATE INDUCES A U-SHAPED JRNL TITL 3 HEAD-TO-HEAD FOUR-WAY JUNCTION IN CTG REPEAT DNA. JRNL REF J.AM.CHEM.SOC. V. 142 11165 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32478511 JRNL DOI 10.1021/JACS.0C03591 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 50.0 REMARK 3 NUMBER OF REFLECTIONS : 13071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7340 - 3.2060 0.50 1334 146 0.1433 0.1449 REMARK 3 2 3.2060 - 2.5464 0.50 1325 149 0.1754 0.2141 REMARK 3 3 2.5464 - 2.2250 0.49 1299 142 0.1753 0.2212 REMARK 3 4 2.2250 - 2.0218 0.51 1334 148 0.1694 0.1930 REMARK 3 5 2.0218 - 1.8770 0.50 1312 146 0.1701 0.2115 REMARK 3 6 1.8770 - 1.7664 0.50 1306 144 0.1616 0.1965 REMARK 3 7 1.7664 - 1.6780 0.51 1355 147 0.1785 0.2213 REMARK 3 8 1.6780 - 1.6050 0.49 1296 148 0.1972 0.2629 REMARK 3 9 1.6050 - 1.5500 0.46 1207 133 0.2502 0.2690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1314 REMARK 3 ANGLE : 1.251 1995 REMARK 3 CHIRALITY : 0.048 190 REMARK 3 PLANARITY : 0.008 60 REMARK 3 DIHEDRAL : 32.418 592 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4645 17.0440 1.3827 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.2113 REMARK 3 T33: 0.3026 T12: 0.0365 REMARK 3 T13: 0.0187 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.2658 L22: 2.6489 REMARK 3 L33: 1.3178 L12: 1.0021 REMARK 3 L13: 0.4403 L23: 0.0880 REMARK 3 S TENSOR REMARK 3 S11: -0.1878 S12: 0.0297 S13: 0.1811 REMARK 3 S21: -0.1471 S22: 0.1571 S23: 0.3888 REMARK 3 S31: -0.0787 S32: -0.0688 S33: -0.0405 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9889 14.0150 -7.6107 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.2301 REMARK 3 T33: 0.1583 T12: -0.0365 REMARK 3 T13: -0.0167 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.8392 L22: 2.9199 REMARK 3 L33: 1.9544 L12: -1.9771 REMARK 3 L13: 1.4178 L23: -1.7717 REMARK 3 S TENSOR REMARK 3 S11: 0.1440 S12: 0.2709 S13: -0.0353 REMARK 3 S21: -0.4009 S22: -0.0483 S23: 0.2197 REMARK 3 S31: 0.2355 S32: -0.1432 S33: -0.0086 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8618 13.8643 7.8759 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.2025 REMARK 3 T33: 0.2021 T12: -0.0028 REMARK 3 T13: -0.0055 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.5575 L22: 2.8655 REMARK 3 L33: 2.9422 L12: 0.3956 REMARK 3 L13: 1.2021 L23: 1.5906 REMARK 3 S TENSOR REMARK 3 S11: 0.1485 S12: -0.3352 S13: -0.0522 REMARK 3 S21: 0.4291 S22: -0.0458 S23: 0.0360 REMARK 3 S31: 0.2917 S32: -0.2640 S33: -0.2256 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2664 16.9233 -1.2020 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.1780 REMARK 3 T33: 0.2038 T12: 0.0253 REMARK 3 T13: 0.0001 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 2.3001 L22: 3.6209 REMARK 3 L33: 1.3602 L12: -1.9578 REMARK 3 L13: -0.2536 L23: 0.0652 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.1247 S13: 0.1889 REMARK 3 S21: -0.2028 S22: 0.0001 S23: -0.5330 REMARK 3 S31: 0.2781 S32: 0.3396 S33: -0.0353 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13080 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.543 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES (PH=6.5) 50MM, MPD 35 %, POTASSIUM REMARK 280 CHLORIDE 200MM, COCL2 20MM, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.31550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT A 4 O4' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 214 O HOH A 242 1.99 REMARK 500 O HOH B 201 O HOH C 216 2.09 REMARK 500 O HOH A 223 O HOH A 242 2.14 REMARK 500 O HOH A 238 O HOH A 248 2.14 REMARK 500 O HOH B 202 O HOH B 246 2.15 REMARK 500 O HOH C 230 O HOH C 254 2.18 REMARK 500 O HOH D 204 O HOH D 239 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 232 O HOH C 248 2546 2.04 REMARK 500 O HOH A 243 O HOH A 248 2445 2.18 REMARK 500 O HOH C 226 O HOH C 254 2556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 2 O3' DT B 2 C3' -0.038 REMARK 500 DC C 6 O3' DC C 6 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 101 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 5 N7 REMARK 620 2 HOH A 201 O 90.9 REMARK 620 3 HOH A 215 O 92.6 174.5 REMARK 620 4 DG D 8 N7 164.4 90.8 84.6 REMARK 620 5 HOH D 208 O 93.8 75.0 108.9 101.6 REMARK 620 6 HOH D 211 O 82.3 106.2 70.2 82.3 175.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 102 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 8 N7 REMARK 620 2 HOH A 225 O 87.4 REMARK 620 3 HOH B 224 O 94.3 70.1 REMARK 620 4 DG D 5 N7 178.9 91.6 85.3 REMARK 620 5 HOH D 203 O 89.4 167.4 98.1 91.6 REMARK 620 6 HOH D 215 O 87.6 94.9 164.7 92.5 97.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 101 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 5 N7 REMARK 620 2 HOH B 201 O 86.1 REMARK 620 3 HOH B 225 O 91.0 124.8 REMARK 620 4 DG C 8 N7 176.0 91.6 93.0 REMARK 620 5 HOH C 216 O 92.3 58.0 175.9 83.8 REMARK 620 6 HOH D 218 O 89.0 134.8 100.2 90.3 77.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 102 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 8 N7 REMARK 620 2 HOH B 206 O 100.3 REMARK 620 3 DG C 5 N7 168.4 90.6 REMARK 620 4 HOH C 207 O 82.8 175.3 86.6 REMARK 620 5 HOH C 213 O 88.8 103.6 92.3 72.7 REMARK 620 6 HOH C 228 O 80.0 106.6 93.4 77.4 149.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F1R A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F1R B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F1R C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F1R D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide BRU B 1 and DT B REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide BRU C 1 and DT C REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide BRU D 1 and DT D REMARK 800 2 DBREF 6M4T A 1 13 PDB 6M4T 6M4T 1 13 DBREF 6M4T B 1 13 PDB 6M4T 6M4T 1 13 DBREF 6M4T C 1 13 PDB 6M4T 6M4T 1 13 DBREF 6M4T D 1 13 PDB 6M4T 6M4T 1 13 SEQRES 1 A 13 BRU DT DC DT DG DC DT DG DC DT DG DA DA SEQRES 1 B 13 BRU DT DC DT DG DC DT DG DC DT DG DA DA SEQRES 1 C 13 BRU DT DC DT DG DC DT DG DC DT DG DA DA SEQRES 1 D 13 BRU DT DC DT DG DC DT DG DC DT DG DA DA HET BRU A 1 20 HET BRU B 1 20 HET BRU C 1 20 HET BRU D 1 20 HET CO A 101 1 HET CO A 102 1 HET F1R A 103 31 HET CO B 101 1 HET CO B 102 1 HET F1R B 103 31 HET F1R C 101 31 HET F1R D 101 31 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM CO COBALT (II) ION HETNAM F1R N4-[4-[(6-CHLORANYL-2-METHOXY-ACRIDIN-9-YL) HETNAM 2 F1R AMINO]BUTYL]-1,3,5-TRIAZINE-2,4,6-TRIAMINE FORMUL 1 BRU 4(C9 H12 BR N2 O8 P) FORMUL 5 CO 4(CO 2+) FORMUL 7 F1R 4(C21 H23 CL N8 O) FORMUL 13 HOH *207(H2 O) LINK O3' BRU A 1 P DT A 2 1555 1555 1.61 LINK O3' BRU B 1 P DT B 2 1555 1555 1.61 LINK O3' BRU C 1 P DT C 2 1555 1555 1.61 LINK O3' BRU D 1 P DT D 2 1555 1555 1.61 LINK N7 DG A 5 CO CO A 101 1555 1555 2.19 LINK N7 DG A 8 CO CO A 102 1555 1555 2.28 LINK CO CO A 101 O HOH A 201 1555 1555 2.14 LINK CO CO A 101 O HOH A 215 1555 1555 2.02 LINK CO CO A 101 N7 DG D 8 1555 1555 2.12 LINK CO CO A 101 O HOH D 208 1555 1555 2.00 LINK CO CO A 101 O HOH D 211 1555 1555 1.87 LINK CO CO A 102 O HOH A 225 1555 1555 1.97 LINK CO CO A 102 O HOH B 224 1555 1555 2.27 LINK CO CO A 102 N7 DG D 5 1555 1555 2.20 LINK CO CO A 102 O HOH D 203 1555 1555 2.05 LINK CO CO A 102 O HOH D 215 1555 1555 1.97 LINK N7 DG B 5 CO CO B 101 1555 1555 2.16 LINK N7 DG B 8 CO CO B 102 1555 1555 2.19 LINK CO CO B 101 O HOH B 201 1555 1555 2.22 LINK CO CO B 101 O HOH B 225 1555 1555 1.84 LINK CO CO B 101 N7 DG C 8 1555 1555 2.17 LINK CO CO B 101 O HOH C 216 1555 1555 2.08 LINK CO CO B 101 O HOH D 218 1555 1555 2.35 LINK CO CO B 102 O HOH B 206 1555 1555 1.97 LINK CO CO B 102 N7 DG C 5 1555 1555 2.22 LINK CO CO B 102 O HOH C 207 1555 1555 2.19 LINK CO CO B 102 O HOH C 213 1555 1555 2.01 LINK CO CO B 102 O HOH C 228 1555 1555 2.24 SITE 1 AC1 6 DG A 5 HOH A 201 HOH A 215 DG D 8 SITE 2 AC1 6 HOH D 208 HOH D 211 SITE 1 AC2 6 DG A 8 HOH A 225 HOH B 224 DG D 5 SITE 2 AC2 6 HOH D 203 HOH D 215 SITE 1 AC3 12 DT A 10 DG A 11 HOH A 210 HOH A 226 SITE 2 AC3 12 HOH A 229 HOH A 232 DG B 8 DC C 3 SITE 3 AC3 12 DT C 4 DG C 5 HOH C 209 HOH C 213 SITE 1 AC4 6 DG B 5 HOH B 201 HOH B 225 DG C 8 SITE 2 AC4 6 HOH C 216 HOH D 218 SITE 1 AC5 6 DG B 8 HOH B 206 DG C 5 HOH C 207 SITE 2 AC5 6 HOH C 213 HOH C 228 SITE 1 AC6 12 DG A 8 DT B 10 DG B 11 HOH B 213 SITE 2 AC6 12 HOH B 214 HOH B 224 HOH B 229 HOH B 235 SITE 3 AC6 12 HOH B 248 DC D 3 DT D 4 DG D 5 SITE 1 AC7 8 DC A 3 DG A 5 HOH A 215 DT C 10 SITE 2 AC7 8 DG C 11 HOH C 225 HOH C 235 DG D 8 SITE 1 AC8 9 DC B 3 DT B 4 DG B 5 DG C 8 SITE 2 AC8 9 DT D 10 DG D 11 HOH D 201 HOH D 218 SITE 3 AC8 9 HOH D 227 SITE 1 AC9 6 DC B 3 HOH B 217 HOH B 232 DG D 11 SITE 2 AC9 6 DA D 12 DA D 13 SITE 1 AD1 5 DG A 11 DA A 12 DA A 13 DC C 3 SITE 2 AD1 5 HOH C 212 SITE 1 AD2 6 DG B 11 DA B 12 DA B 13 DC D 3 SITE 2 AD2 6 HOH D 212 HOH D 219 CRYST1 57.204 62.631 29.743 90.00 121.29 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017481 0.000000 0.010625 0.00000 SCALE2 0.000000 0.015967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.039345 0.00000 HETATM 1 N1 BRU A 1 -13.168 27.298 17.891 1.00 57.48 N ANISOU 1 N1 BRU A 1 7972 7296 6572 -298 79 -654 N HETATM 2 C2 BRU A 1 -12.058 27.816 17.393 1.00 59.37 C ANISOU 2 C2 BRU A 1 8162 7513 6883 -319 -61 -629 C HETATM 3 N3 BRU A 1 -10.867 27.329 17.715 1.00 64.01 N ANISOU 3 N3 BRU A 1 8755 8146 7420 -394 -242 -547 N HETATM 4 C4 BRU A 1 -10.740 26.312 18.554 1.00 63.64 C ANISOU 4 C4 BRU A 1 8775 8160 7245 -449 -305 -478 C HETATM 5 C5 BRU A 1 -11.887 25.763 19.094 1.00 55.38 C ANISOU 5 C5 BRU A 1 7800 7138 6102 -438 -161 -497 C HETATM 6 C6 BRU A 1 -13.129 26.291 18.748 1.00 54.39 C ANISOU 6 C6 BRU A 1 7657 6973 6035 -360 44 -593 C HETATM 7 O2 BRU A 1 -12.116 28.720 16.646 1.00 56.34 O ANISOU 7 O2 BRU A 1 7722 7065 6619 -275 -30 -675 O HETATM 8 O4 BRU A 1 -9.676 25.878 18.839 1.00 67.39 O ANISOU 8 O4 BRU A 1 9244 8666 7697 -511 -482 -396 O HETATM 9 BR BRU A 1 -11.756 24.268 20.328 1.00 50.28 BR ANISOU 9 BR BRU A 1 7273 6575 5255 -538 -256 -377 BR HETATM 10 C1' BRU A 1 -14.363 27.838 17.568 1.00 55.59 C ANISOU 10 C1' BRU A 1 7706 7005 6412 -219 259 -739 C HETATM 11 C2' BRU A 1 -15.192 27.053 16.506 1.00 48.86 C ANISOU 11 C2' BRU A 1 6682 6166 5715 -106 329 -667 C HETATM 12 C3' BRU A 1 -16.391 27.119 16.882 1.00 45.50 C ANISOU 12 C3' BRU A 1 6283 5727 5278 -76 498 -735 C HETATM 13 C4' BRU A 1 -16.435 27.864 18.370 1.00 54.93 C ANISOU 13 C4' BRU A 1 7692 6906 6274 -177 574 -869 C HETATM 14 O3' BRU A 1 -17.161 27.983 15.962 1.00 35.65 O ANISOU 14 O3' BRU A 1 4932 4394 4219 25 588 -790 O HETATM 15 O4' BRU A 1 -15.260 27.862 18.818 1.00 57.48 O ANISOU 15 O4' BRU A 1 8102 7255 6484 -270 414 -836 O HETATM 16 C5' BRU A 1 -17.385 27.184 19.345 1.00 65.64 C ANISOU 16 C5' BRU A 1 9132 8316 7492 -214 728 -896 C HETATM 17 O5' BRU A 1 -16.685 26.197 20.072 1.00 75.09 O ANISOU 17 O5' BRU A 1 10422 9598 8512 -317 607 -799 O HETATM 18 P BRU A 1 -16.794 26.192 21.711 1.00 84.60 P ANISOU 18 P BRU A 1 11872 10847 9427 -465 675 -869 P HETATM 19 OP1 BRU A 1 -16.109 27.430 22.258 1.00 88.41 O ANISOU 19 OP1 BRU A 1 12501 11275 9814 -539 627 -989 O HETATM 20 OP2 BRU A 1 -16.141 24.957 22.284 1.00 83.46 O ANISOU 20 OP2 BRU A 1 11795 10786 9131 -562 519 -721 O