HEADER TRANSFERASE 11-MAR-20 6M5W TITLE CO-CRYSTAL STRUCTURE OF HUMAN SERINE HYDROXYMETHYLTRANSFERASE 1 IN TITLE 2 COMPLEX WITH PYRIDOXAL 5'-PHOSPHATE (PLP) AND GLYCODEOXYCHOLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE, CYTOSOLIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SHMT,GLYCINE HYDROXYMETHYLTRANSFERASE,SERINE METHYLASE; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHMT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.OTA,A.SENOO,S.ITO,G.UENO,S.NAGATOISHI,K.TSUMOTO,S.SANDO REVDAT 4 29-NOV-23 6M5W 1 REMARK REVDAT 3 17-FEB-21 6M5W 1 JRNL REVDAT 2 03-FEB-21 6M5W 1 AUTHOR JRNL REVDAT 1 20-JAN-21 6M5W 0 JRNL AUTH T.OTA,A.SENOO,M.SHIRAKAWA,H.NONAKA,Y.SAITO,S.ITO,G.UENO, JRNL AUTH 2 S.NAGATOISHI,K.TSUMOTO,S.SANDO JRNL TITL STRUCTURAL BASIS FOR SELECTIVE INHIBITION OF HUMAN SERINE JRNL TITL 2 HYDROXYMETHYLTRANSFERASE BY SECONDARY BILE ACID CONJUGATE. JRNL REF ISCIENCE V. 24 02036 2021 JRNL REFN ESSN 2589-0042 JRNL PMID 33521601 JRNL DOI 10.1016/J.ISCI.2021.102036 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 3 NUMBER OF REFLECTIONS : 21379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6800 - 6.2000 1.00 3803 228 0.1721 0.1985 REMARK 3 2 6.2000 - 4.9300 1.00 3588 207 0.1908 0.2433 REMARK 3 3 4.9300 - 4.3000 1.00 3597 178 0.1733 0.2169 REMARK 3 4 4.3000 - 3.9100 1.00 3566 156 0.1960 0.2380 REMARK 3 5 3.9100 - 3.6300 0.93 3262 168 0.2240 0.2676 REMARK 3 6 3.6300 - 3.4200 0.44 1554 87 0.2306 0.2682 REMARK 3 7 3.4200 - 3.2500 0.21 722 38 0.2591 0.2759 REMARK 3 8 3.2400 - 3.1000 0.06 212 13 0.2774 0.3609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55751 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.82 REMARK 200 R MERGE (I) : 0.52600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.74 REMARK 200 R MERGE FOR SHELL (I) : 4.15700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BJ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 0.05 M HEPES REMARK 280 PH 7.5, AND 35% (V/V) PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.28867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.64433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 157.28867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.64433 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.28867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.64433 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 157.28867 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.64433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 76.37450 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 132.28451 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 393.22167 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 76.37450 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 132.28451 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 393.22167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 HIS A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 481 REMARK 465 ASP A 482 REMARK 465 PHE A 483 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 11 CG OD1 OD2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ARG A 442 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 438 OH TYR A 457 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 77.21 -112.86 REMARK 500 ASN A 55 165.77 176.58 REMARK 500 SER A 74 48.09 -143.40 REMARK 500 GLN A 80 38.87 -140.66 REMARK 500 GLU A 133 158.43 72.82 REMARK 500 HIS A 194 63.18 64.04 REMARK 500 ALA A 200 77.45 -104.40 REMARK 500 CYS A 204 68.89 -158.20 REMARK 500 ASP A 228 76.95 -114.66 REMARK 500 HIS A 256 -139.30 -109.90 REMARK 500 LYS A 257 -115.64 51.35 REMARK 500 ALA A 264 -172.62 -170.62 REMARK 500 VAL A 276 -79.46 -95.34 REMARK 500 ASP A 277 64.68 73.41 REMARK 500 THR A 351 -6.69 78.49 REMARK 500 ASN A 356 -157.57 -132.54 REMARK 500 CYS A 384 -160.37 -160.02 REMARK 500 ARG A 397 71.31 -110.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLP A 501 DBREF 6M5W A 1 483 UNP P34896 GLYC_HUMAN 1 483 SEQADV 6M5W MET A -19 UNP P34896 INITIATING METHIONINE SEQADV 6M5W GLY A -18 UNP P34896 EXPRESSION TAG SEQADV 6M5W SER A -17 UNP P34896 EXPRESSION TAG SEQADV 6M5W SER A -16 UNP P34896 EXPRESSION TAG SEQADV 6M5W HIS A -15 UNP P34896 EXPRESSION TAG SEQADV 6M5W HIS A -14 UNP P34896 EXPRESSION TAG SEQADV 6M5W HIS A -13 UNP P34896 EXPRESSION TAG SEQADV 6M5W HIS A -12 UNP P34896 EXPRESSION TAG SEQADV 6M5W HIS A -11 UNP P34896 EXPRESSION TAG SEQADV 6M5W HIS A -10 UNP P34896 EXPRESSION TAG SEQADV 6M5W SER A -9 UNP P34896 EXPRESSION TAG SEQADV 6M5W SER A -8 UNP P34896 EXPRESSION TAG SEQADV 6M5W GLY A -7 UNP P34896 EXPRESSION TAG SEQADV 6M5W LEU A -6 UNP P34896 EXPRESSION TAG SEQADV 6M5W VAL A -5 UNP P34896 EXPRESSION TAG SEQADV 6M5W PRO A -4 UNP P34896 EXPRESSION TAG SEQADV 6M5W ARG A -3 UNP P34896 EXPRESSION TAG SEQADV 6M5W GLY A -2 UNP P34896 EXPRESSION TAG SEQADV 6M5W SER A -1 UNP P34896 EXPRESSION TAG SEQADV 6M5W HIS A 0 UNP P34896 EXPRESSION TAG SEQRES 1 A 503 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 503 LEU VAL PRO ARG GLY SER HIS MET THR MET PRO VAL ASN SEQRES 3 A 503 GLY ALA HIS LYS ASP ALA ASP LEU TRP SER SER HIS ASP SEQRES 4 A 503 LYS MET LEU ALA GLN PRO LEU LYS ASP SER ASP VAL GLU SEQRES 5 A 503 VAL TYR ASN ILE ILE LYS LYS GLU SER ASN ARG GLN ARG SEQRES 6 A 503 VAL GLY LEU GLU LEU ILE ALA SER GLU ASN PHE ALA SER SEQRES 7 A 503 ARG ALA VAL LEU GLU ALA LEU GLY SER CYS LEU ASN ASN SEQRES 8 A 503 LYS TYR SER GLU GLY TYR PRO GLY GLN ARG TYR TYR GLY SEQRES 9 A 503 GLY THR GLU PHE ILE ASP GLU LEU GLU THR LEU CYS GLN SEQRES 10 A 503 LYS ARG ALA LEU GLN ALA TYR LYS LEU ASP PRO GLN CYS SEQRES 11 A 503 TRP GLY VAL ASN VAL GLN PRO TYR SER GLY SER PRO ALA SEQRES 12 A 503 ASN PHE ALA VAL TYR THR ALA LEU VAL GLU PRO HIS GLY SEQRES 13 A 503 ARG ILE MET GLY LEU ASP LEU PRO ASP GLY GLY HIS LEU SEQRES 14 A 503 THR HIS GLY PHE MET THR ASP LYS LYS LYS ILE SER ALA SEQRES 15 A 503 THR SER ILE PHE PHE GLU SER MET PRO TYR LYS VAL ASN SEQRES 16 A 503 PRO ASP THR GLY TYR ILE ASN TYR ASP GLN LEU GLU GLU SEQRES 17 A 503 ASN ALA ARG LEU PHE HIS PRO LYS LEU ILE ILE ALA GLY SEQRES 18 A 503 THR SER CYS TYR SER ARG ASN LEU GLU TYR ALA ARG LEU SEQRES 19 A 503 ARG LYS ILE ALA ASP GLU ASN GLY ALA TYR LEU MET ALA SEQRES 20 A 503 ASP MET ALA HIS ILE SER GLY LEU VAL ALA ALA GLY VAL SEQRES 21 A 503 VAL PRO SER PRO PHE GLU HIS CYS HIS VAL VAL THR THR SEQRES 22 A 503 THR THR HIS LYS THR LEU ARG GLY CYS ARG ALA GLY MET SEQRES 23 A 503 ILE PHE TYR ARG LYS GLY VAL LYS SER VAL ASP PRO LYS SEQRES 24 A 503 THR GLY LYS GLU ILE LEU TYR ASN LEU GLU SER LEU ILE SEQRES 25 A 503 ASN SER ALA VAL PHE PRO GLY LEU GLN GLY GLY PRO HIS SEQRES 26 A 503 ASN HIS ALA ILE ALA GLY VAL ALA VAL ALA LEU LYS GLN SEQRES 27 A 503 ALA MET THR LEU GLU PHE LYS VAL TYR GLN HIS GLN VAL SEQRES 28 A 503 VAL ALA ASN CYS ARG ALA LEU SER GLU ALA LEU THR GLU SEQRES 29 A 503 LEU GLY TYR LYS ILE VAL THR GLY GLY SER ASP ASN HIS SEQRES 30 A 503 LEU ILE LEU VAL ASP LEU ARG SER LYS GLY THR ASP GLY SEQRES 31 A 503 GLY ARG ALA GLU LYS VAL LEU GLU ALA CYS SER ILE ALA SEQRES 32 A 503 CYS ASN LYS ASN THR CYS PRO GLY ASP ARG SER ALA LEU SEQRES 33 A 503 ARG PRO SER GLY LEU ARG LEU GLY THR PRO ALA LEU THR SEQRES 34 A 503 SER ARG GLY LEU LEU GLU LYS ASP PHE GLN LYS VAL ALA SEQRES 35 A 503 HIS PHE ILE HIS ARG GLY ILE GLU LEU THR LEU GLN ILE SEQRES 36 A 503 GLN SER ASP THR GLY VAL ARG ALA THR LEU LYS GLU PHE SEQRES 37 A 503 LYS GLU ARG LEU ALA GLY ASP LYS TYR GLN ALA ALA VAL SEQRES 38 A 503 GLN ALA LEU ARG GLU GLU VAL GLU SER PHE ALA SER LEU SEQRES 39 A 503 PHE PRO LEU PRO GLY LEU PRO ASP PHE HET PLP A 501 15 HET DXC A 502 27 HET GLY A 503 5 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM DXC (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID HETNAM GLY GLYCINE HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN DXC DEOXYCHOLIC ACID FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 DXC C24 H40 O4 FORMUL 4 GLY C2 H5 N O2 HELIX 1 AA1 LEU A 14 GLN A 24 1 11 HELIX 2 AA2 PRO A 25 ASP A 30 1 6 HELIX 3 AA3 ASP A 30 VAL A 46 1 17 HELIX 4 AA4 SER A 58 GLY A 66 1 9 HELIX 5 AA5 SER A 67 ASN A 71 5 5 HELIX 6 AA6 GLU A 87 TYR A 104 1 18 HELIX 7 AA7 SER A 119 VAL A 132 1 14 HELIX 8 AA8 HIS A 148 GLY A 152 5 5 HELIX 9 AA9 SER A 161 PHE A 167 1 7 HELIX 10 AB1 ASN A 182 HIS A 194 1 13 HELIX 11 AB2 GLU A 210 GLY A 222 1 13 HELIX 12 AB3 ILE A 232 GLY A 239 1 8 HELIX 13 AB4 SER A 243 HIS A 247 5 5 HELIX 14 AB5 HIS A 256 ARG A 260 5 5 HELIX 15 AB6 ASN A 287 PHE A 297 1 11 HELIX 16 AB7 HIS A 305 MET A 320 1 16 HELIX 17 AB8 THR A 321 LEU A 345 1 25 HELIX 18 AB9 ARG A 364 LYS A 366 5 3 HELIX 19 AC1 ASP A 369 CYS A 380 1 12 HELIX 20 AC2 THR A 405 SER A 410 1 6 HELIX 21 AC3 LEU A 414 GLY A 440 1 27 HELIX 22 AC4 THR A 444 GLY A 454 1 11 HELIX 23 AC5 GLY A 454 SER A 473 1 20 SHEET 1 AA1 2 LEU A 48 GLU A 49 0 SHEET 2 AA1 2 ILE A 382 ALA A 383 1 O ALA A 383 N LEU A 48 SHEET 1 AA2 2 GLY A 76 TYR A 77 0 SHEET 2 AA2 2 GLN A 80 ARG A 81 -1 O GLN A 80 N TYR A 77 SHEET 1 AA3 7 TRP A 111 ASN A 114 0 SHEET 2 AA3 7 GLY A 265 ARG A 270 -1 O TYR A 269 N GLY A 112 SHEET 3 AA3 7 VAL A 250 THR A 254 -1 N VAL A 251 O PHE A 268 SHEET 4 AA3 7 TYR A 224 ASP A 228 1 N ALA A 227 O THR A 252 SHEET 5 AA3 7 LEU A 197 GLY A 201 1 N ALA A 200 O MET A 226 SHEET 6 AA3 7 ARG A 137 MET A 139 1 N MET A 139 O ILE A 199 SHEET 7 AA3 7 GLU A 168 SER A 169 1 O GLU A 168 N ILE A 138 SHEET 1 AA4 2 GLY A 272 VAL A 273 0 SHEET 2 AA4 2 LEU A 285 TYR A 286 -1 O TYR A 286 N GLY A 272 SHEET 1 AA5 4 LYS A 348 ILE A 349 0 SHEET 2 AA5 4 LEU A 358 ASP A 362 -1 O ASP A 362 N LYS A 348 SHEET 3 AA5 4 GLY A 400 GLY A 404 -1 O LEU A 403 N ILE A 359 SHEET 4 AA5 4 ASN A 385 ASN A 387 -1 N ASN A 387 O GLY A 400 LINK C23 DXC A 502 N GLY A 503 1555 1555 1.33 CISPEP 1 PHE A 297 PRO A 298 0 8.79 CRYST1 152.749 152.749 235.933 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006547 0.003780 0.000000 0.00000 SCALE2 0.000000 0.007559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004238 0.00000