HEADER HYDROLASE 15-MAR-20 6M6L TITLE THE CRYSTAL STRUCTURE OF GLYCOSIDASE HYDROLYZING NOTOGINSENOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KRIBBELLA FLAVIDA (STRAIN DSM 17836 / JCM 10339 SOURCE 3 / NBRC 14399); SOURCE 4 ORGANISM_TAXID: 479435; SOURCE 5 STRAIN: DSM 17836 / JCM 10339 / NBRC 14399; SOURCE 6 GENE: KFLA_5268; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS GLYCOSIDASE, NOTOGINSENOSIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.F.WANG REVDAT 2 29-NOV-23 6M6L 1 REMARK REVDAT 1 17-MAR-21 6M6L 0 JRNL AUTH R.F.WANG JRNL TITL CHARACTERIZATION AND STRUCTURAL ELUCIDATION OF ENHANCED JRNL TITL 2 CATALYTIC ACTIVITY UPON ENGINEERING GLYCOSIDASE KFGH01 FOR JRNL TITL 3 THE PRODUCTION OF VINA-GINSENOSIDE R7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 147102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 7427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3000 - 4.6574 0.99 4748 252 0.1493 0.1445 REMARK 3 2 4.6574 - 3.6980 0.99 4658 265 0.1245 0.1386 REMARK 3 3 3.6980 - 3.2309 0.99 4718 185 0.1403 0.1739 REMARK 3 4 3.2309 - 2.9357 1.00 4674 250 0.1594 0.1778 REMARK 3 5 2.9357 - 2.7253 1.00 4627 265 0.1690 0.1998 REMARK 3 6 2.7253 - 2.5647 1.00 4670 269 0.1646 0.1965 REMARK 3 7 2.5647 - 2.4363 1.00 4684 231 0.1549 0.1685 REMARK 3 8 2.4363 - 2.3303 1.00 4632 243 0.1524 0.1810 REMARK 3 9 2.3303 - 2.2406 1.00 4680 277 0.1487 0.1874 REMARK 3 10 2.2406 - 2.1633 1.00 4633 254 0.1468 0.1601 REMARK 3 11 2.1633 - 2.0956 1.00 4609 290 0.1428 0.1585 REMARK 3 12 2.0956 - 2.0357 1.00 4670 243 0.1464 0.1850 REMARK 3 13 2.0357 - 1.9821 1.00 4648 253 0.1453 0.1771 REMARK 3 14 1.9821 - 1.9338 1.00 4649 253 0.1443 0.1597 REMARK 3 15 1.9338 - 1.8898 1.00 4664 241 0.1470 0.1783 REMARK 3 16 1.8898 - 1.8496 1.00 4661 237 0.1446 0.1829 REMARK 3 17 1.8496 - 1.8126 1.00 4610 261 0.1503 0.1746 REMARK 3 18 1.8126 - 1.7784 1.00 4648 280 0.1503 0.1794 REMARK 3 19 1.7784 - 1.7467 1.00 4647 241 0.1420 0.1429 REMARK 3 20 1.7467 - 1.7170 1.00 4678 262 0.1468 0.1755 REMARK 3 21 1.7170 - 1.6894 1.00 4580 256 0.1479 0.1806 REMARK 3 22 1.6894 - 1.6634 1.00 4701 213 0.1494 0.1868 REMARK 3 23 1.6634 - 1.6389 1.00 4643 235 0.1495 0.1869 REMARK 3 24 1.6389 - 1.6158 1.00 4720 211 0.1490 0.1793 REMARK 3 25 1.6158 - 1.5940 1.00 4631 216 0.1589 0.1894 REMARK 3 26 1.5940 - 1.5733 1.00 4680 244 0.1644 0.2249 REMARK 3 27 1.5733 - 1.5536 1.00 4617 250 0.1694 0.2011 REMARK 3 28 1.5536 - 1.5349 1.00 4660 241 0.1680 0.1996 REMARK 3 29 1.5349 - 1.5170 1.00 4661 253 0.1729 0.2091 REMARK 3 30 1.5170 - 1.5000 1.00 4574 256 0.1751 0.2020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7250 REMARK 3 ANGLE : 0.960 9930 REMARK 3 CHIRALITY : 0.060 1050 REMARK 3 PLANARITY : 0.008 1314 REMARK 3 DIHEDRAL : 15.613 4223 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 6M6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TA9 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DEHYDRATE (PH 5.6), 0.2 M AMMONIUM ACETATE AND PEG 4000 (30%, W/ REMARK 280 V), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.78550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1128 O HOH B 1142 2.04 REMARK 500 OE2 GLU A 343 O HOH A 601 2.09 REMARK 500 O HOH A 602 O HOH A 833 2.09 REMARK 500 O HOH A 1101 O HOH A 1218 2.09 REMARK 500 OE1 GLU A 215 O HOH A 602 2.10 REMARK 500 O2 GOL A 502 O HOH A 603 2.11 REMARK 500 O HOH B 865 O HOH B 1055 2.11 REMARK 500 O HOH A 614 O HOH A 1104 2.12 REMARK 500 O HOH A 828 O HOH A 961 2.12 REMARK 500 O HOH B 1055 O HOH B 1068 2.13 REMARK 500 O HOH B 716 O HOH B 1021 2.16 REMARK 500 O HOH B 1086 O HOH B 1110 2.16 REMARK 500 O HOH B 1043 O HOH B 1132 2.16 REMARK 500 O HOH A 1025 O HOH A 1038 2.16 REMARK 500 OE1 GLU A 378 O HOH A 604 2.17 REMARK 500 O HOH A 618 O HOH A 1048 2.18 REMARK 500 O HOH B 680 O HOH B 1021 2.18 REMARK 500 O HOH B 872 O HOH B 1010 2.18 REMARK 500 O HOH A 602 O HOH A 1087 2.18 REMARK 500 O HOH B 1020 O HOH B 1025 2.18 REMARK 500 O HOH A 944 O HOH A 1104 2.19 REMARK 500 O HOH A 1104 O HOH A 1167 2.19 REMARK 500 O HOH A 700 O HOH A 965 2.19 REMARK 500 O HOH A 1059 O HOH A 1168 2.19 REMARK 500 O HOH A 961 O HOH A 1016 2.19 REMARK 500 OE1 GLU B 407 O4 XYP B 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1105 O HOH B 1055 2547 2.12 REMARK 500 O HOH A 785 O HOH B 1055 2547 2.16 REMARK 500 O HOH A 739 O HOH B 913 2547 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 178 CB GLU B 178 CG -0.143 REMARK 500 GLU B 178 CD GLU B 178 OE2 0.074 REMARK 500 GLU B 446 CD GLU B 446 OE1 0.078 REMARK 500 GLU B 446 CD GLU B 446 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 365 CA - CB - CG ANGL. DEV. = -17.5 DEGREES REMARK 500 GLU B 446 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 -129.20 54.35 REMARK 500 TRP A 123 -9.84 92.49 REMARK 500 THR A 164 -71.04 -72.55 REMARK 500 TYR A 295 -36.76 -130.70 REMARK 500 VAL A 308 -56.35 72.25 REMARK 500 HIS A 329 79.05 -151.82 REMARK 500 TRP A 408 -131.47 56.97 REMARK 500 ALA B 55 -129.31 54.88 REMARK 500 TRP B 123 -9.13 92.98 REMARK 500 THR B 164 -71.18 -73.41 REMARK 500 TYR B 295 -36.61 -131.82 REMARK 500 VAL B 308 -56.79 72.68 REMARK 500 HIS B 329 77.91 -152.66 REMARK 500 LYS B 342 -66.13 -93.76 REMARK 500 GLU B 407 59.47 -92.89 REMARK 500 TRP B 408 -131.41 57.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 347 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1223 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1224 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1225 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH A1227 DISTANCE = 8.48 ANGSTROMS REMARK 525 HOH B1152 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B1153 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B1154 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B1155 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B1156 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH B1157 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B1158 DISTANCE = 9.59 ANGSTROMS DBREF 6M6L A 1 446 UNP D2PL27 D2PL27_KRIFD 1 446 DBREF 6M6L B 1 446 UNP D2PL27 D2PL27_KRIFD 1 446 SEQADV 6M6L PHE A 0 UNP D2PL27 EXPRESSION TAG SEQADV 6M6L PHE B 0 UNP D2PL27 EXPRESSION TAG SEQRES 1 A 447 PHE MET VAL GLU LEU SER PRO LEU ARG GLN ASP PHE VAL SEQRES 2 A 447 TRP GLY THR ALA THR SER ALA TYR GLN ILE GLU GLY ALA SEQRES 3 A 447 VAL ALA ASP ASP GLY ARG LEU PRO SER ILE TRP ASP THR SEQRES 4 A 447 PHE CYS ARG VAL PRO GLY ALA ILE ASP ASN GLY ASP THR SEQRES 5 A 447 GLY ASP VAL ALA CYS ASP SER TYR HIS ARG TRP PRO GLU SEQRES 6 A 447 ASP LEU ALA LEU LEU LYS GLN LEU GLY VAL ASP ALA TYR SEQRES 7 A 447 ARG PHE SER ILE ALA TRP PRO ARG VAL ILE PRO THR GLY SEQRES 8 A 447 SER GLY ALA VAL ASN THR ALA GLY LEU ASP TYR TYR ASP SEQRES 9 A 447 ARG VAL VAL ASP ASP LEU LEU ALA GLU GLY ILE LYS PRO SEQRES 10 A 447 PHE VAL THR LEU TYR HIS TRP ASP LEU PRO GLN ALA LEU SEQRES 11 A 447 GLN ASP LEU GLY GLY TRP ASP ASN ARG ASP THR ALA TYR SEQRES 12 A 447 ARG PHE ALA GLU TYR ALA ALA VAL VAL GLY ALA LYS LEU SEQRES 13 A 447 GLY ASP ARG VAL ARG ASP TRP VAL THR LEU ASN GLU PRO SEQRES 14 A 447 LEU CYS SER ALA TRP ILE GLY HIS TRP GLU GLY ARG MET SEQRES 15 A 447 ALA PRO GLY ILE THR ASP PRO ALA ILE ALA VAL ARG ALA SEQRES 16 A 447 SER TYR ASN LEU LEU LEU ALA HIS GLY LEU GLY VAL ALA SEQRES 17 A 447 ALA LEU ARG ASP ALA CYS PRO GLU PRO PRO ALA VAL GLY SEQRES 18 A 447 LEU VAL VAL ASN LEU SER GLY CYS GLU PRO ALA SER GLN SEQRES 19 A 447 SER PRO GLU ASP ILE ARG ALA ALA ARG ILE ALA ASP GLY SEQRES 20 A 447 HIS ILE ASN ARG TRP TRP LEU ASP PRO THR SER GLY ARG SEQRES 21 A 447 GLY PHE PRO ALA ASP MET VAL GLU THR TYR GLY VAL GLU SEQRES 22 A 447 LEU PRO GLU ARG PRO GLY ASP LEU GLU ILE ILE ALA ALA SEQRES 23 A 447 PRO THR ASP PHE ILE GLY LEU ASN TYR TYR PHE ARG GLN SEQRES 24 A 447 ILE ILE GLU ALA ASP GLY SER VAL PRO VAL LEU GLY PHE SEQRES 25 A 447 SER GLN VAL PRO GLY PRO ASN ALA GLU HIS THR MET ILE SEQRES 26 A 447 ASP TRP GLU VAL HIS PRO ALA GLY LEU GLU GLU LEU ILE SEQRES 27 A 447 LEU ARG LEU ALA LYS GLU TYR GLY ALA GLU LYS ILE TYR SEQRES 28 A 447 VAL THR GLU ASN GLY SER ALA TRP VAL ASP GLN PRO ASP SEQRES 29 A 447 ALA GLU PHE ALA VAL ASP ASP PRO ASP ARG THR ALA TYR SEQRES 30 A 447 LEU GLU GLU HIS LEU ALA ALA CYS VAL ARG ALA VAL GLU SEQRES 31 A 447 GLN GLY ALA PRO LEU ALA GLY TYR PHE ALA TRP SER LEU SEQRES 32 A 447 MET ASP ASN PHE GLU TRP ALA TYR GLY TYR ALA PRO ARG SEQRES 33 A 447 PHE GLY LEU ALA TYR VAL ASP TYR PRO THR GLY THR ARG SEQRES 34 A 447 VAL MET LYS THR SER GLY LYS ARG TYR ALA ASP LEU ILE SEQRES 35 A 447 ARG GLY HIS ARG GLU SEQRES 1 B 447 PHE MET VAL GLU LEU SER PRO LEU ARG GLN ASP PHE VAL SEQRES 2 B 447 TRP GLY THR ALA THR SER ALA TYR GLN ILE GLU GLY ALA SEQRES 3 B 447 VAL ALA ASP ASP GLY ARG LEU PRO SER ILE TRP ASP THR SEQRES 4 B 447 PHE CYS ARG VAL PRO GLY ALA ILE ASP ASN GLY ASP THR SEQRES 5 B 447 GLY ASP VAL ALA CYS ASP SER TYR HIS ARG TRP PRO GLU SEQRES 6 B 447 ASP LEU ALA LEU LEU LYS GLN LEU GLY VAL ASP ALA TYR SEQRES 7 B 447 ARG PHE SER ILE ALA TRP PRO ARG VAL ILE PRO THR GLY SEQRES 8 B 447 SER GLY ALA VAL ASN THR ALA GLY LEU ASP TYR TYR ASP SEQRES 9 B 447 ARG VAL VAL ASP ASP LEU LEU ALA GLU GLY ILE LYS PRO SEQRES 10 B 447 PHE VAL THR LEU TYR HIS TRP ASP LEU PRO GLN ALA LEU SEQRES 11 B 447 GLN ASP LEU GLY GLY TRP ASP ASN ARG ASP THR ALA TYR SEQRES 12 B 447 ARG PHE ALA GLU TYR ALA ALA VAL VAL GLY ALA LYS LEU SEQRES 13 B 447 GLY ASP ARG VAL ARG ASP TRP VAL THR LEU ASN GLU PRO SEQRES 14 B 447 LEU CYS SER ALA TRP ILE GLY HIS TRP GLU GLY ARG MET SEQRES 15 B 447 ALA PRO GLY ILE THR ASP PRO ALA ILE ALA VAL ARG ALA SEQRES 16 B 447 SER TYR ASN LEU LEU LEU ALA HIS GLY LEU GLY VAL ALA SEQRES 17 B 447 ALA LEU ARG ASP ALA CYS PRO GLU PRO PRO ALA VAL GLY SEQRES 18 B 447 LEU VAL VAL ASN LEU SER GLY CYS GLU PRO ALA SER GLN SEQRES 19 B 447 SER PRO GLU ASP ILE ARG ALA ALA ARG ILE ALA ASP GLY SEQRES 20 B 447 HIS ILE ASN ARG TRP TRP LEU ASP PRO THR SER GLY ARG SEQRES 21 B 447 GLY PHE PRO ALA ASP MET VAL GLU THR TYR GLY VAL GLU SEQRES 22 B 447 LEU PRO GLU ARG PRO GLY ASP LEU GLU ILE ILE ALA ALA SEQRES 23 B 447 PRO THR ASP PHE ILE GLY LEU ASN TYR TYR PHE ARG GLN SEQRES 24 B 447 ILE ILE GLU ALA ASP GLY SER VAL PRO VAL LEU GLY PHE SEQRES 25 B 447 SER GLN VAL PRO GLY PRO ASN ALA GLU HIS THR MET ILE SEQRES 26 B 447 ASP TRP GLU VAL HIS PRO ALA GLY LEU GLU GLU LEU ILE SEQRES 27 B 447 LEU ARG LEU ALA LYS GLU TYR GLY ALA GLU LYS ILE TYR SEQRES 28 B 447 VAL THR GLU ASN GLY SER ALA TRP VAL ASP GLN PRO ASP SEQRES 29 B 447 ALA GLU PHE ALA VAL ASP ASP PRO ASP ARG THR ALA TYR SEQRES 30 B 447 LEU GLU GLU HIS LEU ALA ALA CYS VAL ARG ALA VAL GLU SEQRES 31 B 447 GLN GLY ALA PRO LEU ALA GLY TYR PHE ALA TRP SER LEU SEQRES 32 B 447 MET ASP ASN PHE GLU TRP ALA TYR GLY TYR ALA PRO ARG SEQRES 33 B 447 PHE GLY LEU ALA TYR VAL ASP TYR PRO THR GLY THR ARG SEQRES 34 B 447 VAL MET LYS THR SER GLY LYS ARG TYR ALA ASP LEU ILE SEQRES 35 B 447 ARG GLY HIS ARG GLU HET GOL A 501 6 HET GOL A 502 6 HET EDO A 503 4 HET GOL B 501 6 HET XYP B 502 10 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM XYP BETA-D-XYLOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 EDO C2 H6 O2 FORMUL 7 XYP C5 H10 O5 FORMUL 8 HOH *1185(H2 O) HELIX 1 AA1 SER A 18 GLU A 23 1 6 HELIX 2 AA2 SER A 34 CYS A 40 1 7 HELIX 3 AA3 ILE A 46 ASP A 50 5 5 HELIX 4 AA4 ASP A 57 GLY A 73 1 17 HELIX 5 AA5 ALA A 82 ILE A 87 1 6 HELIX 6 AA6 ASN A 95 GLU A 112 1 18 HELIX 7 AA7 PRO A 126 ASP A 131 1 6 HELIX 8 AA8 LEU A 132 ASN A 137 5 6 HELIX 9 AA9 ARG A 138 GLY A 156 1 19 HELIX 10 AB1 GLU A 167 TRP A 177 1 11 HELIX 11 AB2 ASP A 187 CYS A 213 1 27 HELIX 12 AB3 SER A 234 ASN A 249 1 16 HELIX 13 AB4 ASN A 249 SER A 257 1 9 HELIX 14 AB5 PRO A 262 GLY A 270 1 9 HELIX 15 AB6 GLY A 278 ALA A 284 1 7 HELIX 16 AB7 HIS A 329 GLU A 343 1 15 HELIX 17 AB8 ASP A 370 GLN A 390 1 21 HELIX 18 AB9 GLU A 407 GLY A 411 5 5 HELIX 19 AC1 LYS A 431 GLU A 446 1 16 HELIX 20 AC2 SER B 18 GLU B 23 1 6 HELIX 21 AC3 SER B 34 ARG B 41 1 8 HELIX 22 AC4 ILE B 46 ASP B 50 5 5 HELIX 23 AC5 ASP B 57 GLY B 73 1 17 HELIX 24 AC6 ALA B 82 ILE B 87 1 6 HELIX 25 AC7 ASN B 95 GLU B 112 1 18 HELIX 26 AC8 PRO B 126 ASP B 131 1 6 HELIX 27 AC9 LEU B 132 ASN B 137 5 6 HELIX 28 AD1 ARG B 138 GLY B 156 1 19 HELIX 29 AD2 GLU B 167 TRP B 177 1 11 HELIX 30 AD3 ASP B 187 CYS B 213 1 27 HELIX 31 AD4 SER B 234 ASN B 249 1 16 HELIX 32 AD5 ASN B 249 SER B 257 1 9 HELIX 33 AD6 PRO B 262 GLY B 270 1 9 HELIX 34 AD7 GLY B 278 ALA B 284 1 7 HELIX 35 AD8 HIS B 329 LYS B 342 1 14 HELIX 36 AD9 ASP B 370 GLN B 390 1 21 HELIX 37 AE1 GLU B 407 GLY B 411 5 5 HELIX 38 AE2 LYS B 431 GLU B 446 1 16 SHEET 1 AA1 9 VAL A 12 ALA A 16 0 SHEET 2 AA1 9 ALA A 76 SER A 80 1 O ARG A 78 N THR A 15 SHEET 3 AA1 9 LYS A 115 TYR A 121 1 O THR A 119 N PHE A 79 SHEET 4 AA1 9 ASP A 161 ASN A 166 1 O VAL A 163 N VAL A 118 SHEET 5 AA1 9 ALA A 218 ASN A 224 1 O ALA A 218 N TRP A 162 SHEET 6 AA1 9 ILE A 290 ASN A 293 1 O ASN A 293 N VAL A 223 SHEET 7 AA1 9 ILE A 349 ASN A 354 1 O TYR A 350 N LEU A 292 SHEET 8 AA1 9 LEU A 394 TRP A 400 1 O ALA A 395 N ILE A 349 SHEET 9 AA1 9 VAL A 12 ALA A 16 1 N GLY A 14 O TYR A 397 SHEET 1 AA2 3 CYS A 228 PRO A 230 0 SHEET 2 AA2 3 GLN A 298 ALA A 302 1 O ILE A 300 N GLU A 229 SHEET 3 AA2 3 PHE A 311 VAL A 314 -1 O SER A 312 N GLU A 301 SHEET 1 AA3 2 ALA A 419 VAL A 421 0 SHEET 2 AA3 2 ARG A 428 MET A 430 -1 O VAL A 429 N TYR A 420 SHEET 1 AA4 9 VAL B 12 ALA B 16 0 SHEET 2 AA4 9 ALA B 76 SER B 80 1 O ARG B 78 N THR B 15 SHEET 3 AA4 9 LYS B 115 TYR B 121 1 O THR B 119 N PHE B 79 SHEET 4 AA4 9 ASP B 161 ASN B 166 1 O VAL B 163 N VAL B 118 SHEET 5 AA4 9 ALA B 218 ASN B 224 1 O ALA B 218 N TRP B 162 SHEET 6 AA4 9 PHE B 289 ASN B 293 1 O ASN B 293 N VAL B 223 SHEET 7 AA4 9 ILE B 349 ASN B 354 1 O TYR B 350 N LEU B 292 SHEET 8 AA4 9 LEU B 394 TRP B 400 1 O ALA B 395 N ILE B 349 SHEET 9 AA4 9 VAL B 12 ALA B 16 1 N GLY B 14 O TYR B 397 SHEET 1 AA5 3 CYS B 228 PRO B 230 0 SHEET 2 AA5 3 GLN B 298 ALA B 302 1 O ILE B 300 N GLU B 229 SHEET 3 AA5 3 PHE B 311 VAL B 314 -1 O SER B 312 N GLU B 301 SHEET 1 AA6 2 ALA B 419 VAL B 421 0 SHEET 2 AA6 2 ARG B 428 MET B 430 -1 O VAL B 429 N TYR B 420 CISPEP 1 ALA A 182 PRO A 183 0 4.91 CISPEP 2 TRP A 400 SER A 401 0 7.50 CISPEP 3 ALA B 182 PRO B 183 0 5.13 CISPEP 4 TRP B 400 SER B 401 0 7.55 CRYST1 52.608 95.571 93.348 90.00 90.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019009 0.000000 0.000215 0.00000 SCALE2 0.000000 0.010463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010713 0.00000