HEADER CELL ADHESION 18-MAR-20 6M7C TITLE CRYSTAL STRUCTURE OF C-TERMINAL FRAGMENT OF PILUS ADHESIN SPAC FROM TITLE 2 LACTOBACILLUS RHAMNOSUS GG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILUS ASSEMBLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS; SOURCE 3 ORGANISM_TAXID: 47715; SOURCE 4 ATCC: 53103; SOURCE 5 GENE: CCE29_04955; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PILUS ADHESIN, TIP PILIN, SPACBA PILUS, SORTASE, LACTOBACILLUS KEYWDS 2 RHAMNOSUS GG, PILI, FIMBRIA, PROBIOTICS, SPAC, SURFACE PROTEIN, CELL KEYWDS 3 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.KANT,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN REVDAT 6 29-NOV-23 6M7C 1 REMARK REVDAT 5 15-SEP-21 6M7C 1 REMARK LINK REVDAT 4 09-SEP-20 6M7C 1 AUTHOR REVDAT 3 26-AUG-20 6M7C 1 AUTHOR REVDAT 2 19-AUG-20 6M7C 1 JRNL REVDAT 1 29-JUL-20 6M7C 0 JRNL AUTH A.KANT,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN JRNL TITL CRYSTAL STRUCTURE OF LACTOBACILLAR SPAC REVEALS AN ATYPICAL JRNL TITL 2 FIVE-DOMAIN PILUS TIP ADHESIN: EXPOSING ITS JRNL TITL 3 SUBSTRATE-BINDING AND ASSEMBLY IN SPACBA PILI. JRNL REF J.STRUCT.BIOL. V. 211 07571 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32653644 JRNL DOI 10.1016/J.JSB.2020.107571 REMARK 2 REMARK 2 RESOLUTION. 3.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 6315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 360 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 315 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.33000 REMARK 3 B22 (A**2) : -7.72000 REMARK 3 B33 (A**2) : 5.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.547 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.446 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 57.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.850 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1715 ; 0.009 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2359 ; 2.040 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 8.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;38.805 ;25.102 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 160 ;20.269 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;36.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1348 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1047 ; 3.911 ; 5.553 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1307 ; 6.508 ; 8.330 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 668 ; 4.277 ; 5.055 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6699 ;12.883 ;99.934 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 596 A 731 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8350 -12.1200 -12.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.7175 REMARK 3 T33: 0.0349 T12: -0.0762 REMARK 3 T13: 0.0029 T23: 0.0959 REMARK 3 L TENSOR REMARK 3 L11: 7.3557 L22: 3.0855 REMARK 3 L33: 5.0838 L12: -0.5223 REMARK 3 L13: -1.9682 L23: -0.5313 REMARK 3 S TENSOR REMARK 3 S11: 0.1248 S12: 0.8857 S13: 0.3353 REMARK 3 S21: -0.0680 S22: 0.0972 S23: -0.1669 REMARK 3 S31: -0.1725 S32: -0.2494 S33: -0.2219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 732 A 856 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0910 -30.4140 -42.9500 REMARK 3 T TENSOR REMARK 3 T11: 0.4102 T22: 1.0798 REMARK 3 T33: 0.0948 T12: 0.0557 REMARK 3 T13: 0.0627 T23: -0.2204 REMARK 3 L TENSOR REMARK 3 L11: 3.4633 L22: 5.2843 REMARK 3 L33: 10.4110 L12: -2.9652 REMARK 3 L13: -3.6176 L23: 5.3373 REMARK 3 S TENSOR REMARK 3 S11: 0.3187 S12: 0.2215 S13: 0.3018 REMARK 3 S21: 0.2020 S22: -0.0838 S23: -0.1009 REMARK 3 S31: 0.3573 S32: -0.3061 S33: -0.2349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87782 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6676 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.180 REMARK 200 RESOLUTION RANGE LOW (A) : 55.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.73700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15%W/V PEG 6000, 5% W/V GLYCEROL, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.62200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.38200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.27950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.38200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.62200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.27950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 593 REMARK 465 THR A 594 REMARK 465 ASN A 595 REMARK 465 GLU A 858 REMARK 465 HIS A 859 REMARK 465 HIS A 860 REMARK 465 HIS A 861 REMARK 465 HIS A 862 REMARK 465 HIS A 863 REMARK 465 HIS A 864 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 596 CG CD OE1 NE2 REMARK 470 GLN A 597 CG CD OE1 NE2 REMARK 470 THR A 606 OG1 CG2 REMARK 470 ASP A 608 CG OD1 OD2 REMARK 470 LEU A 612 CG CD1 CD2 REMARK 470 SER A 613 OG REMARK 470 ASP A 615 CG OD1 OD2 REMARK 470 GLN A 616 CG CD OE1 NE2 REMARK 470 LEU A 617 CG CD1 CD2 REMARK 470 LYS A 618 CG CD CE NZ REMARK 470 MET A 620 CG SD CE REMARK 470 GLN A 621 CG CD OE1 NE2 REMARK 470 ASP A 629 CG OD1 OD2 REMARK 470 GLN A 633 CG CD OE1 NE2 REMARK 470 SER A 636 OG REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 THR A 638 OG1 CG2 REMARK 470 ASN A 639 CG OD1 ND2 REMARK 470 SER A 643 OG REMARK 470 ASP A 645 CG OD1 OD2 REMARK 470 LEU A 646 CG CD1 CD2 REMARK 470 GLN A 647 CG CD OE1 NE2 REMARK 470 LEU A 649 CG CD1 CD2 REMARK 470 THR A 663 OG1 CG2 REMARK 470 TYR A 665 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 678 OG REMARK 470 THR A 687 OG1 CG2 REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 ILE A 697 CG1 CG2 CD1 REMARK 470 GLN A 700 CG CD OE1 NE2 REMARK 470 VAL A 706 CG1 CG2 REMARK 470 ASP A 708 CG OD1 OD2 REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 ASP A 711 CG OD1 OD2 REMARK 470 ASP A 712 CG OD1 OD2 REMARK 470 THR A 714 OG1 CG2 REMARK 470 VAL A 715 CG1 CG2 REMARK 470 THR A 716 OG1 CG2 REMARK 470 ASP A 718 CG OD1 OD2 REMARK 470 GLN A 721 CG CD OE1 NE2 REMARK 470 ILE A 722 CG1 CG2 CD1 REMARK 470 LEU A 725 CG CD1 CD2 REMARK 470 THR A 726 OG1 CG2 REMARK 470 LYS A 727 CG CD CE NZ REMARK 470 ASP A 729 OD2 REMARK 470 GLU A 730 CG CD OE1 OE2 REMARK 470 LYS A 732 CG CD CE NZ REMARK 470 SER A 734 OG REMARK 470 THR A 736 OG1 CG2 REMARK 470 ILE A 740 CG1 CG2 CD1 REMARK 470 GLN A 742 CG CD OE1 NE2 REMARK 470 ASP A 743 CG OD1 OD2 REMARK 470 ASN A 744 CG OD1 ND2 REMARK 470 GLN A 745 CG CD OE1 NE2 REMARK 470 TYR A 748 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 749 CG CD1 CD2 REMARK 470 THR A 755 OG1 CG2 REMARK 470 LEU A 756 CG CD1 CD2 REMARK 470 GLN A 757 CG CD OE1 NE2 REMARK 470 GLU A 762 CG CD OE1 OE2 REMARK 470 GLU A 764 CG CD OE1 OE2 REMARK 470 SER A 768 OG REMARK 470 SER A 769 OG REMARK 470 GLU A 773 CG CD OE1 OE2 REMARK 470 GLN A 775 CG CD OE1 NE2 REMARK 470 LYS A 780 CG CD CE NZ REMARK 470 VAL A 782 CG1 CG2 REMARK 470 ASP A 784 CG OD1 OD2 REMARK 470 MET A 789 CG SD CE REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 THR A 792 OG1 CG2 REMARK 470 LYS A 793 CG CD CE NZ REMARK 470 ASP A 796 CG OD1 OD2 REMARK 470 TYR A 798 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 799 CG CD OE1 NE2 REMARK 470 LYS A 804 CG CD CE NZ REMARK 470 ILE A 805 CG1 CG2 CD1 REMARK 470 ILE A 807 CG1 CG2 CD1 REMARK 470 GLN A 808 CG CD OE1 NE2 REMARK 470 VAL A 809 CG1 CG2 REMARK 470 LYS A 814 CG CD CE NZ REMARK 470 VAL A 818 CG1 CG2 REMARK 470 THR A 819 OG1 CG2 REMARK 470 ILE A 820 CG1 CG2 CD1 REMARK 470 ASP A 821 CG OD1 OD2 REMARK 470 GLU A 823 CG CD OE1 OE2 REMARK 470 LEU A 825 CG CD1 CD2 REMARK 470 LYS A 826 CG CD CE NZ REMARK 470 GLU A 829 CG CD OE1 OE2 REMARK 470 LYS A 831 CG CD CE NZ REMARK 470 LEU A 836 CG CD1 CD2 REMARK 470 ASP A 839 CG OD1 OD2 REMARK 470 ILE A 843 CG1 CG2 CD1 REMARK 470 GLN A 846 CG CD OE1 NE2 REMARK 470 LEU A 857 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 604 CG ASP A 729 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 617 -9.08 -58.66 REMARK 500 PHE A 632 18.86 51.33 REMARK 500 SER A 636 -75.30 -89.17 REMARK 500 ASN A 690 77.29 -156.01 REMARK 500 LEU A 703 -147.67 -96.49 REMARK 500 SER A 734 -157.96 -92.13 REMARK 500 MET A 735 140.37 -174.46 REMARK 500 GLN A 799 -179.48 -67.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6M3Y RELATED DB: PDB REMARK 900 6M3Y CONTAINS THE FULL LENGTH PROTEIN FROM LACTOBACILLUS RHAMNOSUS REMARK 900 GG DBREF1 6M7C A 594 856 UNP A0A1Y0DVK9_LACRH DBREF2 6M7C A A0A1Y0DVK9 594 856 SEQADV 6M7C MET A 593 UNP A0A1Y0DVK INITIATING METHIONINE SEQADV 6M7C LEU A 857 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 6M7C GLU A 858 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 6M7C HIS A 859 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 6M7C HIS A 860 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 6M7C HIS A 861 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 6M7C HIS A 862 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 6M7C HIS A 863 UNP A0A1Y0DVK EXPRESSION TAG SEQADV 6M7C HIS A 864 UNP A0A1Y0DVK EXPRESSION TAG SEQRES 1 A 272 MET THR ASN GLN GLN TYR GLY PHE GLN PHE GLN LYS LYS SEQRES 2 A 272 THR THR ASP GLY THR ASP LEU SER ALA ASP GLN LEU LYS SEQRES 3 A 272 ALA MET GLN PHE ASN LEU THR GLN TYR SER ASP ASN SER SEQRES 4 A 272 PHE GLN GLN ALA SER LYS THR ASN ALA ILE THR SER THR SEQRES 5 A 272 ASP LEU GLN ALA LEU ALA PRO GLY TYR TYR GLY ILE GLN SEQRES 6 A 272 GLU ALA ALA ALA PRO THR GLY TYR GLN LEU ASP GLY THR SEQRES 7 A 272 THR TYR LEU PHE GLN LEU THR SER ASP GLY GLN TRP GLN SEQRES 8 A 272 TYR HIS GLY THR LYS ASP ASN VAL THR SER GLY SER VAL SEQRES 9 A 272 ILE ASN GLY GLN GLN THR LEU ASN PRO VAL GLY ASP LYS SEQRES 10 A 272 SER ASP ASP PHE THR VAL THR GLY ASP HIS GLN GLN ILE SEQRES 11 A 272 LEU THR LEU THR LYS TYR ASP GLU PRO LYS PRO SER MET SEQRES 12 A 272 THR LEU ARG VAL ILE LYS GLN ASP ASN GLN SER GLN TYR SEQRES 13 A 272 LEU ALA GLY ALA ALA PHE THR LEU GLN PRO SER ALA GLY SEQRES 14 A 272 GLU ALA GLU THR ILE THR SER SER ALA THR SER GLU GLY SEQRES 15 A 272 GLN ALA PHE ALA THR LYS LEU VAL ALA ASP GLY THR TYR SEQRES 16 A 272 THR MET SER GLU THR LYS ALA PRO ASP GLY TYR GLN SER SEQRES 17 A 272 ASN PRO ALA LYS ILE ALA ILE GLN VAL ALA THR THR GLY SEQRES 18 A 272 LYS GLU ALA THR VAL THR ILE ASP GLY GLU ALA LEU LYS SEQRES 19 A 272 PRO GLY GLU SER LYS ASN GLY TYR THR LEU ALA ILE ASP SEQRES 20 A 272 GLY SER THR ILE THR LEU GLN ALA ILE ASN GLN PRO LEU SEQRES 21 A 272 ALA ILE LEU PRO LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASP A 615 ALA A 619 5 5 SHEET 1 AA1 5 GLN A 647 ALA A 648 0 SHEET 2 AA1 5 GLY A 599 THR A 606 -1 N PHE A 600 O GLN A 647 SHEET 3 AA1 5 ILE A 722 ASP A 729 1 O LYS A 727 N LYS A 605 SHEET 4 AA1 5 LYS A 709 THR A 714 -1 N THR A 714 O THR A 724 SHEET 5 AA1 5 GLN A 700 VAL A 706 -1 N LEU A 703 O ASP A 711 SHEET 1 AA2 6 ALA A 635 ILE A 641 0 SHEET 2 AA2 6 GLN A 621 TYR A 627 -1 N GLN A 626 O SER A 636 SHEET 3 AA2 6 GLY A 652 ALA A 660 -1 O TYR A 653 N TYR A 627 SHEET 4 AA2 6 THR A 671 LEU A 676 -1 O PHE A 674 N TYR A 654 SHEET 5 AA2 6 TRP A 682 GLY A 686 -1 O HIS A 685 N LEU A 673 SHEET 6 AA2 6 VAL A 691 VAL A 696 -1 O THR A 692 N HIS A 685 SHEET 1 AA3 5 GLN A 775 ALA A 776 0 SHEET 2 AA3 5 THR A 736 GLN A 742 -1 N VAL A 739 O GLN A 775 SHEET 3 AA3 5 THR A 842 ILE A 848 1 O LEU A 845 N ILE A 740 SHEET 4 AA3 5 TYR A 834 ASP A 839 -1 N ALA A 837 O THR A 844 SHEET 5 AA3 5 SER A 830 LYS A 831 -1 N LYS A 831 O TYR A 834 SHEET 1 AA4 6 GLU A 764 THR A 767 0 SHEET 2 AA4 6 ALA A 753 PRO A 758 -1 N LEU A 756 O GLU A 764 SHEET 3 AA4 6 THR A 786 LYS A 793 -1 O THR A 788 N GLN A 757 SHEET 4 AA4 6 ILE A 805 VAL A 809 -1 O ILE A 805 N MET A 789 SHEET 5 AA4 6 ALA A 816 ILE A 820 -1 O THR A 819 N ALA A 806 SHEET 6 AA4 6 GLU A 823 ALA A 824 -1 O GLU A 823 N ILE A 820 LINK NZ LYS A 741 CG ASN A 849 1555 1555 1.28 LINK NZ LYS A 741 CB ASN A 849 1555 1555 1.81 CRYST1 41.244 58.559 166.764 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005996 0.00000