HEADER STRUCTURAL PROTEIN 23-AUG-18 6M9B TITLE WILD-TYPE STREPTAVIDIN IN COMPLEX WITH BIOTIN SOLVED BY NATIVE SAD TITLE 2 WITH DATA COLLECTED AT 6 KEV COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: STREPTOMYCES AVIDINII; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1895 KEYWDS TETRAMER, BIOTIN BINDER, WILD TYPE, LIGAND, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.D.FINKE REVDAT 3 13-MAR-24 6M9B 1 REMARK REVDAT 2 13-NOV-19 6M9B 1 JRNL REVDAT 1 17-APR-19 6M9B 0 JRNL AUTH S.BASU,A.FINKE,L.VERA,M.WANG,V.OLIERIC JRNL TITL MAKING ROUTINE NATIVE SAD A REALITY: LESSONS FROM BEAMLINE JRNL TITL 2 X06DA AT THE SWISS LIGHT SOURCE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 262 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30950397 JRNL DOI 10.1107/S2059798319003103 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 136282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1858 - 4.8099 1.00 4340 236 0.1481 0.1558 REMARK 3 2 4.8099 - 3.8182 1.00 4359 228 0.1167 0.1294 REMARK 3 3 3.8182 - 3.3357 0.99 4353 231 0.1358 0.1574 REMARK 3 4 3.3357 - 3.0307 0.99 4324 227 0.1503 0.1878 REMARK 3 5 3.0307 - 2.8135 0.99 4349 225 0.1546 0.1842 REMARK 3 6 2.8135 - 2.6477 1.00 4328 228 0.1503 0.2138 REMARK 3 7 2.6477 - 2.5151 1.00 4335 228 0.1502 0.1950 REMARK 3 8 2.5151 - 2.4056 1.00 4350 229 0.1437 0.1810 REMARK 3 9 2.4056 - 2.3130 1.00 4384 230 0.1475 0.1934 REMARK 3 10 2.3130 - 2.2332 1.00 4339 229 0.1508 0.1999 REMARK 3 11 2.2332 - 2.1633 1.00 4398 231 0.1540 0.1933 REMARK 3 12 2.1633 - 2.1015 1.00 4319 227 0.1489 0.1928 REMARK 3 13 2.1015 - 2.0462 1.00 4326 230 0.1507 0.1836 REMARK 3 14 2.0462 - 1.9963 1.00 4398 232 0.1496 0.2090 REMARK 3 15 1.9963 - 1.9509 1.00 4327 227 0.1539 0.1841 REMARK 3 16 1.9509 - 1.9094 1.00 4369 232 0.1583 0.1855 REMARK 3 17 1.9094 - 1.8712 1.00 4344 229 0.1598 0.1711 REMARK 3 18 1.8712 - 1.8359 1.00 4363 228 0.1613 0.1749 REMARK 3 19 1.8359 - 1.8031 1.00 4342 226 0.1640 0.1979 REMARK 3 20 1.8031 - 1.7725 1.00 4417 233 0.1788 0.2134 REMARK 3 21 1.7725 - 1.7439 1.00 4300 227 0.1828 0.2118 REMARK 3 22 1.7439 - 1.7171 1.00 4344 228 0.1889 0.1988 REMARK 3 23 1.7171 - 1.6918 1.00 4277 225 0.1923 0.2079 REMARK 3 24 1.6918 - 1.6680 1.00 4420 233 0.1954 0.2232 REMARK 3 25 1.6680 - 1.6454 1.00 4316 229 0.2035 0.2253 REMARK 3 26 1.6454 - 1.6241 0.99 4409 232 0.2111 0.2651 REMARK 3 27 1.6241 - 1.6038 1.00 4289 223 0.2209 0.2344 REMARK 3 28 1.6038 - 1.5845 1.00 4385 232 0.2302 0.2899 REMARK 3 29 1.5845 - 1.5660 1.00 4351 229 0.2340 0.2350 REMARK 3 30 1.5660 - 1.5484 0.76 3313 170 0.2540 0.2695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3785 REMARK 3 ANGLE : 1.368 5200 REMARK 3 CHIRALITY : 0.058 589 REMARK 3 PLANARITY : 0.005 650 REMARK 3 DIHEDRAL : 13.424 1262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9548 24.5883 77.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.2906 T22: 0.2077 REMARK 3 T33: 0.1213 T12: 0.0736 REMARK 3 T13: -0.0344 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.0496 L22: 2.1075 REMARK 3 L33: 1.8402 L12: -0.4361 REMARK 3 L13: 0.4152 L23: -0.2217 REMARK 3 S TENSOR REMARK 3 S11: -0.1265 S12: -0.2787 S13: 0.0107 REMARK 3 S21: 0.4157 S22: 0.1159 S23: -0.1453 REMARK 3 S31: -0.0166 S32: 0.1261 S33: 0.0232 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9529 21.5360 70.4733 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1217 REMARK 3 T33: 0.0805 T12: 0.0553 REMARK 3 T13: -0.0162 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.9058 L22: 1.9988 REMARK 3 L33: 2.0223 L12: -0.4639 REMARK 3 L13: 0.0187 L23: -0.4111 REMARK 3 S TENSOR REMARK 3 S11: -0.1788 S12: -0.1512 S13: -0.0260 REMARK 3 S21: 0.2905 S22: 0.1224 S23: -0.0874 REMARK 3 S31: 0.0183 S32: 0.0671 S33: 0.0544 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0682 30.2662 68.2016 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1034 REMARK 3 T33: 0.1478 T12: 0.0237 REMARK 3 T13: -0.0247 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.7121 L22: 2.9295 REMARK 3 L33: 4.2475 L12: 1.7437 REMARK 3 L13: 2.4397 L23: 1.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.1027 S12: -0.0217 S13: 0.1880 REMARK 3 S21: 0.3042 S22: 0.1420 S23: -0.1586 REMARK 3 S31: -0.2743 S32: 0.2266 S33: 0.0402 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0243 26.8829 65.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.1232 T22: 0.1349 REMARK 3 T33: 0.1022 T12: 0.0569 REMARK 3 T13: 0.0238 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 6.9955 L22: 2.9963 REMARK 3 L33: 2.8015 L12: 2.2763 REMARK 3 L13: 2.1964 L23: 0.1136 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.0758 S13: 0.0232 REMARK 3 S21: 0.2019 S22: 0.1587 S23: 0.1480 REMARK 3 S31: -0.0730 S32: -0.1858 S33: -0.1040 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2574 47.9882 52.8313 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1279 REMARK 3 T33: 0.1834 T12: 0.0450 REMARK 3 T13: 0.0275 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 1.0682 L22: 2.0232 REMARK 3 L33: 1.5385 L12: 0.0598 REMARK 3 L13: -0.0418 L23: -0.6651 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.0513 S13: 0.2446 REMARK 3 S21: 0.2485 S22: 0.2052 S23: 0.1884 REMARK 3 S31: -0.3347 S32: -0.2547 S33: -0.1516 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7548 42.3488 46.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.0890 REMARK 3 T33: 0.1414 T12: -0.0155 REMARK 3 T13: -0.0161 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.5176 L22: 2.4662 REMARK 3 L33: 2.3591 L12: -0.0578 REMARK 3 L13: -0.8418 L23: -0.3253 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.2136 S13: 0.2872 REMARK 3 S21: -0.0534 S22: 0.1686 S23: 0.0170 REMARK 3 S31: -0.1544 S32: -0.0373 S33: -0.0797 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1028 34.6886 52.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.0996 REMARK 3 T33: 0.0859 T12: -0.0119 REMARK 3 T13: 0.0027 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 3.1496 L22: 5.5758 REMARK 3 L33: 3.7492 L12: -2.4129 REMARK 3 L13: -1.6682 L23: 1.8850 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0125 S13: 0.1009 REMARK 3 S21: 0.0368 S22: 0.0993 S23: -0.0020 REMARK 3 S31: -0.0783 S32: -0.1111 S33: -0.0898 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5046 43.6796 58.9064 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.1051 REMARK 3 T33: 0.1883 T12: 0.0018 REMARK 3 T13: -0.0134 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.7051 L22: 6.3262 REMARK 3 L33: 3.0152 L12: -1.1494 REMARK 3 L13: -0.1124 L23: 1.2109 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.0285 S13: 0.3843 REMARK 3 S21: 0.2773 S22: 0.1094 S23: -0.2510 REMARK 3 S31: -0.5253 S32: 0.0902 S33: -0.1050 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 8 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9636 7.0595 59.1441 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.1244 REMARK 3 T33: 0.2285 T12: -0.0187 REMARK 3 T13: 0.0406 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.5353 L22: 2.7245 REMARK 3 L33: 3.2056 L12: -0.1298 REMARK 3 L13: 0.3301 L23: -0.7855 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: -0.0468 S13: -0.2782 REMARK 3 S21: 0.0013 S22: 0.1378 S23: 0.1903 REMARK 3 S31: 0.5961 S32: -0.0898 S33: -0.0780 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 30 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1175 11.8190 62.6021 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.0998 REMARK 3 T33: 0.1684 T12: 0.0086 REMARK 3 T13: 0.0199 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.5780 L22: 1.6834 REMARK 3 L33: 1.6498 L12: -0.6057 REMARK 3 L13: -0.2036 L23: -0.1352 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: -0.0990 S13: -0.2460 REMARK 3 S21: 0.0591 S22: 0.1215 S23: 0.1124 REMARK 3 S31: 0.2567 S32: -0.0413 S33: 0.0367 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9833 15.8552 58.9751 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.0979 REMARK 3 T33: 0.1155 T12: 0.0229 REMARK 3 T13: 0.0082 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.9390 L22: 2.5116 REMARK 3 L33: 1.7536 L12: -0.1992 REMARK 3 L13: -0.0904 L23: -0.1504 REMARK 3 S TENSOR REMARK 3 S11: -0.1101 S12: 0.1138 S13: -0.0388 REMARK 3 S21: -0.0010 S22: 0.0733 S23: -0.1906 REMARK 3 S31: 0.2472 S32: 0.1442 S33: 0.0397 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3483 16.1080 56.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1378 REMARK 3 T33: 0.1316 T12: -0.0456 REMARK 3 T13: -0.0084 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 5.6174 L22: 5.4889 REMARK 3 L33: 2.7156 L12: 2.2145 REMARK 3 L13: -0.0152 L23: -0.3087 REMARK 3 S TENSOR REMARK 3 S11: -0.1631 S12: 0.1961 S13: -0.1445 REMARK 3 S21: -0.2248 S22: 0.1279 S23: 0.3942 REMARK 3 S31: 0.3886 S32: -0.3440 S33: 0.0309 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 105 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9663 27.9481 55.6504 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1203 REMARK 3 T33: 0.1086 T12: 0.0088 REMARK 3 T13: -0.0010 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.9167 L22: 5.3201 REMARK 3 L33: 0.9208 L12: 2.4041 REMARK 3 L13: -0.1044 L23: -0.8498 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.0255 S13: 0.1559 REMARK 3 S21: -0.1663 S22: 0.0406 S23: -0.0695 REMARK 3 S31: -0.0557 S32: -0.0223 S33: 0.1136 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 123 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6828 3.9258 50.1845 REMARK 3 T TENSOR REMARK 3 T11: 0.3932 T22: 0.2395 REMARK 3 T33: 0.3452 T12: -0.0791 REMARK 3 T13: 0.0791 T23: -0.0899 REMARK 3 L TENSOR REMARK 3 L11: 7.1321 L22: 4.1236 REMARK 3 L33: 3.3501 L12: -1.1637 REMARK 3 L13: -4.3585 L23: 0.9472 REMARK 3 S TENSOR REMARK 3 S11: -0.4399 S12: 0.6889 S13: -0.5981 REMARK 3 S21: -0.3467 S22: 0.0963 S23: -0.3243 REMARK 3 S31: 0.4984 S32: 0.3751 S33: 0.2514 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0330 33.4962 40.2331 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.3603 REMARK 3 T33: 0.2192 T12: -0.1081 REMARK 3 T13: -0.1696 T23: 0.1821 REMARK 3 L TENSOR REMARK 3 L11: 0.3550 L22: 1.1611 REMARK 3 L33: 1.3173 L12: -0.3645 REMARK 3 L13: 0.6786 L23: -0.4244 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: 0.3412 S13: 0.0763 REMARK 3 S21: -0.3280 S22: 0.2878 S23: 0.7021 REMARK 3 S31: 0.0059 S32: -0.4021 S33: -0.1343 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 37 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4019 35.5104 43.3571 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.2456 REMARK 3 T33: 0.1589 T12: -0.0464 REMARK 3 T13: -0.0505 T23: 0.0928 REMARK 3 L TENSOR REMARK 3 L11: 2.5873 L22: 2.0392 REMARK 3 L33: 1.2778 L12: 0.1040 REMARK 3 L13: -0.0798 L23: -0.6083 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: 0.2670 S13: 0.0598 REMARK 3 S21: -0.2775 S22: 0.2517 S23: 0.2952 REMARK 3 S31: 0.0586 S32: -0.2977 S33: -0.0900 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 71 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3447 33.8352 53.3138 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.1939 REMARK 3 T33: 0.1866 T12: 0.0097 REMARK 3 T13: -0.0116 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 2.0906 L22: 1.5503 REMARK 3 L33: 1.8450 L12: 0.1063 REMARK 3 L13: -0.0209 L23: -1.0713 REMARK 3 S TENSOR REMARK 3 S11: -0.1051 S12: 0.1187 S13: 0.0250 REMARK 3 S21: 0.0098 S22: 0.2857 S23: 0.3665 REMARK 3 S31: -0.0697 S32: -0.4529 S33: 0.0077 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 115 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2150 25.6137 46.7587 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.2306 REMARK 3 T33: 0.2037 T12: -0.1118 REMARK 3 T13: -0.0739 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 1.7833 L22: 1.8022 REMARK 3 L33: 6.5149 L12: -0.7553 REMARK 3 L13: 1.1110 L23: 0.9304 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.3038 S13: -0.1487 REMARK 3 S21: -0.2430 S22: 0.1695 S23: 0.5122 REMARK 3 S31: 0.3347 S32: -0.2495 S33: -0.0298 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1, 2.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.548 REMARK 200 RESOLUTION RANGE LOW (A) : 49.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.25MG SAV WT + 0.610MG BIOTIN IN REMARK 280 500UL H2O IN THE WELL: 500UL => 50% MPD SITTING DROPS: 1UL SAV- REMARK 280 BIOT + 1UL 80% MPD, 100MM MMT PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.16100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 126 REMARK 465 PRO A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 ALA A 130 REMARK 465 SER A 131 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 PRO B 127 REMARK 465 SER B 128 REMARK 465 ALA B 129 REMARK 465 ALA B 130 REMARK 465 SER B 131 REMARK 465 ALA C 5 REMARK 465 GLU C 6 REMARK 465 ALA C 7 REMARK 465 SER C 128 REMARK 465 ALA C 129 REMARK 465 ALA C 130 REMARK 465 SER C 131 REMARK 465 ALA D 5 REMARK 465 GLU D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 127 REMARK 465 SER D 128 REMARK 465 ALA D 129 REMARK 465 ALA D 130 REMARK 465 SER D 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 125 CG1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 44 -155.68 64.76 REMARK 500 GLU A 93 65.69 -119.18 REMARK 500 SER B 44 -156.06 58.22 REMARK 500 SER C 44 -154.33 56.94 REMARK 500 SER D 44 -159.49 66.90 REMARK 500 GLU D 93 67.42 -112.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTN D 201 DBREF 6M9B A 5 131 UNP P22629 SAV_STRAV 37 163 DBREF 6M9B B 5 131 UNP P22629 SAV_STRAV 37 163 DBREF 6M9B C 5 131 UNP P22629 SAV_STRAV 37 163 DBREF 6M9B D 5 131 UNP P22629 SAV_STRAV 37 163 SEQRES 1 A 127 ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 A 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 A 127 LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SEQRES 4 A 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 A 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 A 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 A 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 A 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 A 127 ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR SEQRES 10 A 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 B 127 ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 B 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 B 127 LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SEQRES 4 B 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 B 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 B 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 B 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 B 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 B 127 ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR SEQRES 10 B 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 C 127 ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 C 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 C 127 LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SEQRES 4 C 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 C 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 C 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 C 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 C 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 C 127 ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR SEQRES 10 C 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 D 127 ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 D 127 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 D 127 LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SEQRES 4 D 127 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 D 127 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 D 127 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 D 127 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 D 127 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 D 127 ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR SEQRES 10 D 127 PHE THR LYS VAL LYS PRO SER ALA ALA SER HET BTN A 201 31 HET BTN B 201 31 HET BTN C 201 31 HET BTN D 201 31 HETNAM BTN BIOTIN FORMUL 5 BTN 4(C10 H16 N2 O3 S) FORMUL 9 HOH *506(H2 O) HELIX 1 AA1 THR A 107 LYS A 113 5 7 HELIX 2 AA2 THR B 107 LYS B 113 5 7 HELIX 3 AA3 ASN C 110 LYS C 113 5 4 HELIX 4 AA4 THR D 107 LYS D 113 5 7 SHEET 1 AA1 9 GLY A 11 TYR A 14 0 SHEET 2 AA1 9 THR A 20 ALA A 25 -1 O PHE A 21 N TRP A 13 SHEET 3 AA1 9 ALA A 30 GLU A 36 -1 O THR A 34 N ILE A 22 SHEET 4 AA1 9 TYR A 46 TYR A 52 -1 O TYR A 46 N TYR A 35 SHEET 5 AA1 9 THR A 63 LYS A 72 -1 O THR A 68 N THR A 49 SHEET 6 AA1 9 ASN A 77 VAL A 89 -1 O THR A 82 N VAL A 69 SHEET 7 AA1 9 ARG A 95 SER A 104 -1 O ARG A 95 N VAL A 89 SHEET 8 AA1 9 THR A 115 THR A 123 -1 O PHE A 122 N ILE A 96 SHEET 9 AA1 9 GLY A 11 TYR A 14 -1 N TYR A 14 O THR A 123 SHEET 1 AA2 8 GLY B 11 TYR B 14 0 SHEET 2 AA2 8 THR B 20 ALA B 25 -1 O PHE B 21 N TRP B 13 SHEET 3 AA2 8 ALA B 30 GLU B 36 -1 O THR B 34 N ILE B 22 SHEET 4 AA2 8 TYR B 46 TYR B 52 -1 O TYR B 46 N TYR B 35 SHEET 5 AA2 8 THR B 63 LYS B 72 -1 O THR B 68 N THR B 49 SHEET 6 AA2 8 ASN B 77 VAL B 89 -1 O TYR B 88 N THR B 63 SHEET 7 AA2 8 ARG B 95 SER B 104 -1 O ARG B 95 N VAL B 89 SHEET 8 AA2 8 THR B 115 PHE B 122 -1 O PHE B 122 N ILE B 96 SHEET 1 AA3 9 GLY C 11 ASN C 15 0 SHEET 2 AA3 9 THR C 20 ALA C 25 -1 O PHE C 21 N TRP C 13 SHEET 3 AA3 9 ALA C 30 GLU C 36 -1 O THR C 34 N ILE C 22 SHEET 4 AA3 9 TYR C 46 TYR C 52 -1 O TYR C 46 N TYR C 35 SHEET 5 AA3 9 THR C 63 LYS C 72 -1 O THR C 68 N THR C 49 SHEET 6 AA3 9 ASN C 77 VAL C 89 -1 O GLY C 86 N LEU C 65 SHEET 7 AA3 9 ARG C 95 SER C 104 -1 O ARG C 95 N VAL C 89 SHEET 8 AA3 9 THR C 115 THR C 123 -1 O PHE C 122 N ILE C 96 SHEET 9 AA3 9 GLY C 11 ASN C 15 -1 N TYR C 14 O THR C 123 SHEET 1 AA4 9 GLY D 11 ASN D 15 0 SHEET 2 AA4 9 THR D 20 ALA D 25 -1 O PHE D 21 N TRP D 13 SHEET 3 AA4 9 ALA D 30 GLU D 36 -1 O THR D 32 N THR D 24 SHEET 4 AA4 9 TYR D 46 TYR D 52 -1 O TYR D 46 N TYR D 35 SHEET 5 AA4 9 THR D 63 LYS D 72 -1 O THR D 68 N THR D 49 SHEET 6 AA4 9 ASN D 77 VAL D 89 -1 O GLY D 86 N LEU D 65 SHEET 7 AA4 9 ARG D 95 SER D 104 -1 O ARG D 95 N VAL D 89 SHEET 8 AA4 9 THR D 115 THR D 123 -1 O GLY D 118 N TRP D 100 SHEET 9 AA4 9 GLY D 11 ASN D 15 -1 N TYR D 14 O THR D 123 SITE 1 AC1 15 ASN A 15 LEU A 17 SER A 19 TYR A 35 SITE 2 AC1 15 SER A 37 VAL A 39 ASN A 41 TRP A 71 SITE 3 AC1 15 ALA A 78 SER A 80 THR A 82 TRP A 84 SITE 4 AC1 15 TRP A 100 LEU A 102 ASP A 120 SITE 1 AC2 15 ASN B 15 LEU B 17 SER B 19 TYR B 35 SITE 2 AC2 15 SER B 37 VAL B 39 ASN B 41 TRP B 71 SITE 3 AC2 15 ALA B 78 SER B 80 THR B 82 TRP B 100 SITE 4 AC2 15 ASP B 120 HOH B 302 HOH B 391 SITE 1 AC3 15 ASN C 15 LEU C 17 SER C 19 TYR C 35 SITE 2 AC3 15 SER C 37 VAL C 39 ASN C 41 TRP C 71 SITE 3 AC3 15 ALA C 78 SER C 80 THR C 82 TRP C 100 SITE 4 AC3 15 ASP C 120 HOH C 308 HOH C 309 SITE 1 AC4 15 ASN D 15 LEU D 17 SER D 19 TYR D 35 SITE 2 AC4 15 SER D 37 VAL D 39 ASN D 41 TRP D 71 SITE 3 AC4 15 ALA D 78 SER D 80 THR D 82 TRP D 100 SITE 4 AC4 15 LEU D 102 ASP D 120 HOH D 348 CRYST1 50.978 98.322 52.795 90.00 112.64 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019616 0.000000 0.008180 0.00000 SCALE2 0.000000 0.010171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020522 0.00000