HEADER MEMBRANE PROTEIN 24-AUG-18 6M9T
TITLE CRYSTAL STRUCTURE OF EP3 RECEPTOR BOUND TO MISOPROSTOL-FA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROSTAGLANDIN E2 RECEPTOR EP3 SUBTYPE, ENDOLYSIN CHIMERA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: EP3 UNP RESIDUES 2-259,273-353 WITH INTERVENING LYSOZYME;
COMPND 5 SYNONYM: PGE2 RECEPTOR EP3 SUBTYPE,PGE2-R,PROSTANOID EP3 RECEPTOR,
COMPND 6 LYSIS PROTEIN,LYSOZYME,MURAMIDASE;
COMPND 7 EC: 3.2.1.17;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 10665;
SOURCE 5 GENE: PTGER3;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS GPCR, PROSTAGLANDIN E2 RECEPTOR 3 (EP3), PROSTAGLANDIN ANALOGUE,
KEYWDS 2 MEMBRANE PROTEIN, MISOPROSTOL-FA (BIOLOGICALLY ACTIVE FREE ACID),
KEYWDS 3 XFEL, LCP, T4L
EXPDTA X-RAY DIFFRACTION
AUTHOR M.AUDET,K.L.WHITE,B.BRETON,B.ZARZYCKA,G.W.HAN,Y.LU,C.GATI,A.BATYUK,
AUTHOR 2 P.POPOV,J.VELASQUEZ,D.MANAHAN,H.HU,U.WEIERSTALL,W.LIU,W.SHUI,
AUTHOR 3 V.KATRICH,V.CHEREZOV,M.A.HANSON,R.C.STEVENS
REVDAT 5 06-NOV-24 6M9T 1 REMARK
REVDAT 4 11-OCT-23 6M9T 1 REMARK
REVDAT 3 29-APR-20 6M9T 1 REMARK
REVDAT 2 13-FEB-19 6M9T 1 JRNL
REVDAT 1 05-DEC-18 6M9T 0
JRNL AUTH M.AUDET,K.L.WHITE,B.BRETON,B.ZARZYCKA,G.W.HAN,Y.LU,C.GATI,
JRNL AUTH 2 A.BATYUK,P.POPOV,J.VELASQUEZ,D.MANAHAN,H.HU,U.WEIERSTALL,
JRNL AUTH 3 W.LIU,W.SHUI,V.KATRITCH,V.CHEREZOV,M.A.HANSON,R.C.STEVENS
JRNL TITL CRYSTAL STRUCTURE OF MISOPROSTOL BOUND TO THE LABOR INDUCER
JRNL TITL 2 PROSTAGLANDIN E2RECEPTOR.
JRNL REF NAT. CHEM. BIOL. V. 15 11 2019
JRNL REFN ESSN 1552-4469
JRNL PMID 30510194
JRNL DOI 10.1038/S41589-018-0160-Y
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.27
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 22101
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.200
REMARK 3 FREE R VALUE : 0.242
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750
REMARK 3 FREE R VALUE TEST SET COUNT : 1050
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 11
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.62
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2925
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2820
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2798
REMARK 3 BIN R VALUE (WORKING SET) : 0.2790
REMARK 3 BIN FREE R VALUE : 0.3410
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.34
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3416
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 127
REMARK 3 SOLVENT ATOMS : 5
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 74.95
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 128.8
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -5.05720
REMARK 3 B22 (A**2) : -3.09750
REMARK 3 B33 (A**2) : 8.15470
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 20.02750
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.560
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.315
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.234
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.337
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.242
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3630 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4909 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1257 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 55 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 530 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3630 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 479 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3985 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.009
REMARK 3 BOND ANGLES (DEGREES) : 0.95
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.88
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.66
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|46 - A|259 A|273 - A|353 }
REMARK 3 ORIGIN FOR THE GROUP (A): 126.1788 -10.9319 145.6804
REMARK 3 T TENSOR
REMARK 3 T11: -1.0475 T22: -0.8036
REMARK 3 T33: -1.1661 T12: 0.0099
REMARK 3 T13: -0.0409 T23: 0.0578
REMARK 3 L TENSOR
REMARK 3 L11: 2.9504 L22: 2.5618
REMARK 3 L33: 4.3817 L12: 0.0481
REMARK 3 L13: 1.1550 L23: 0.8426
REMARK 3 S TENSOR
REMARK 3 S11: -0.1590 S12: -0.2316 S13: 0.1667
REMARK 3 S21: 0.0543 S22: 0.1092 S23: 0.3195
REMARK 3 S31: -0.1149 S32: -0.5722 S33: 0.0498
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|1000 - A|1163 }
REMARK 3 ORIGIN FOR THE GROUP (A): 119.9708 -17.1007 102.9829
REMARK 3 T TENSOR
REMARK 3 T11: -0.7657 T22: -0.6251
REMARK 3 T33: -1.3404 T12: -0.1645
REMARK 3 T13: -0.2056 T23: 0.0782
REMARK 3 L TENSOR
REMARK 3 L11: 6.1972 L22: 4.1803
REMARK 3 L33: 12.5595 L12: -0.2125
REMARK 3 L13: 5.0948 L23: -0.4859
REMARK 3 S TENSOR
REMARK 3 S11: -0.1528 S12: 0.3283 S13: 0.3114
REMARK 3 S21: -0.4009 S22: -0.1887 S23: -0.2772
REMARK 3 S31: -0.6020 S32: 0.9801 S33: 0.3415
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6M9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-18.
REMARK 100 THE DEPOSITION ID IS D_1000233952.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-AUG-17
REMARK 200 TEMPERATURE (KELVIN) : 293
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER
REMARK 200 BEAMLINE : CXI
REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.302
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : CS-PAD CXI-1
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.6.2
REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.6.2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22151
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500
REMARK 200 RESOLUTION RANGE LOW (A) : 30.030
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 223.9
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 90.50
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.250
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRIES 3P0G & 4EIY
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.72
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 3.8-4.2, 10
REMARK 280 -35 MM MAGNESIUM SULFATE, 20-23% V/V PEG400, 2.5% JEFFAMINE M-
REMARK 280 600, LIPIDIC CUBIC PHASE, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.40000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.42500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.40000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.42500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 22420 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 VAL A -11
REMARK 465 PHE A -10
REMARK 465 ALA A -9
REMARK 465 ASP A -8
REMARK 465 TYR A -7
REMARK 465 LYS A -6
REMARK 465 ASP A -5
REMARK 465 ASP A -4
REMARK 465 ASP A -3
REMARK 465 ASP A -2
REMARK 465 GLY A -1
REMARK 465 ALA A 0
REMARK 465 PRO A 1
REMARK 465 LYS A 2
REMARK 465 GLU A 3
REMARK 465 THR A 4
REMARK 465 ARG A 5
REMARK 465 GLY A 6
REMARK 465 TYR A 7
REMARK 465 GLY A 8
REMARK 465 GLY A 9
REMARK 465 ASP A 10
REMARK 465 ALA A 11
REMARK 465 PRO A 12
REMARK 465 PHE A 13
REMARK 465 CYS A 14
REMARK 465 THR A 15
REMARK 465 ARG A 16
REMARK 465 LEU A 17
REMARK 465 ASN A 18
REMARK 465 HIS A 19
REMARK 465 SER A 20
REMARK 465 TYR A 21
REMARK 465 THR A 22
REMARK 465 GLY A 23
REMARK 465 MET A 24
REMARK 465 TRP A 25
REMARK 465 ALA A 26
REMARK 465 PRO A 27
REMARK 465 GLU A 28
REMARK 465 ARG A 29
REMARK 465 SER A 30
REMARK 465 ALA A 31
REMARK 465 GLU A 32
REMARK 465 ALA A 33
REMARK 465 ARG A 34
REMARK 465 GLY A 35
REMARK 465 ASN A 36
REMARK 465 LEU A 37
REMARK 465 THR A 38
REMARK 465 ARG A 39
REMARK 465 PRO A 40
REMARK 465 PRO A 41
REMARK 465 GLY A 42
REMARK 465 SER A 43
REMARK 465 GLY A 44
REMARK 465 GLU A 45
REMARK 465 GLY A 213
REMARK 465 ARG A 214
REMARK 465 GLY A 215
REMARK 465 GLY A 216
REMARK 465 ASN A 217
REMARK 465 GLY A 218
REMARK 465 THR A 219
REMARK 465 SER A 220
REMARK 465 SER A 221
REMARK 465 SER A 222
REMARK 465 HIS A 223
REMARK 465 GLN A 309
REMARK 465 THR A 310
REMARK 465 SER A 311
REMARK 465 VAL A 312
REMARK 465 GLU A 313
REMARK 465 HIS A 314
REMARK 465 CYS A 315
REMARK 465 LYS A 316
REMARK 465 THR A 317
REMARK 465 HIS A 318
REMARK 465 THR A 319
REMARK 465 PHE A 2007
REMARK 465 GLN A 2008
REMARK 465 GLY A 2009
REMARK 465 PRO A 2010
REMARK 465 HIS A 2011
REMARK 465 HIS A 2012
REMARK 465 HIS A 2013
REMARK 465 HIS A 2014
REMARK 465 HIS A 2015
REMARK 465 HIS A 2016
REMARK 465 HIS A 2017
REMARK 465 HIS A 2018
REMARK 465 HIS A 2019
REMARK 465 HIS A 2020
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 CYS A 47 SG
REMARK 470 TYR A 77 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 81 CG CD OE1 OE2
REMARK 470 SER A 82 OG
REMARK 470 ARG A 84 NE CZ NH1 NH2
REMARK 470 PHE A 88 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2
REMARK 470 HIS A 122 CG ND1 CD2 CE1 NE2
REMARK 470 LEU A 179 CG CD1 CD2
REMARK 470 ASN A 224 CG OD1 ND2
REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 GLU A 320 CG CD OE1 OE2
REMARK 470 LYS A 321 CG CD CE NZ
REMARK 470 LYS A 323 CG CD CE NZ
REMARK 470 ARG A2001 CD NE CZ NH1 NH2
REMARK 470 GLU A2004 CG CD OE1 OE2
REMARK 470 VAL A2005 CG1 CG2
REMARK 470 LEU A2006 CG CD1 CD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 80 73.66 55.61
REMARK 500 GLU A 81 -107.45 -101.94
REMARK 500 SER A 82 -43.67 -136.17
REMARK 500 LYS A 85 23.71 -78.74
REMARK 500 LYS A 117 59.86 74.34
REMARK 500 GLN A 118 -146.81 51.79
REMARK 500 ARG A 119 72.79 59.83
REMARK 500 MET A 169 -60.91 -157.39
REMARK 500 LYS A 170 -9.28 61.94
REMARK 500 THR A 171 -31.61 68.75
REMARK 500 PRO A 204 37.16 -95.87
REMARK 500 PHE A1114 47.34 -91.21
REMARK 500 SER A1163 -77.61 -83.63
REMARK 500 LEU A 347 -63.11 -142.99
REMARK 500 LEU A 353 45.67 -90.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLC A 2106
REMARK 610 OLA A 2107
REMARK 610 OLA A 2108
REMARK 610 OLA A 2109
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue J9P A 2101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2103
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2104
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2105
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2106
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2109
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2110
DBREF 6M9T A 2 259 UNP P43115 PE2R3_HUMAN 2 259
DBREF 6M9T A 1002 1161 UNP P00720 ENLYS_BPT4 2 161
DBREF 6M9T A 273 353 UNP P43115 PE2R3_HUMAN 273 353
SEQADV 6M9T VAL A -11 UNP P43115 EXPRESSION TAG
SEQADV 6M9T PHE A -10 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ALA A -9 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ASP A -8 UNP P43115 EXPRESSION TAG
SEQADV 6M9T TYR A -7 UNP P43115 EXPRESSION TAG
SEQADV 6M9T LYS A -6 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ASP A -5 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ASP A -4 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ASP A -3 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ASP A -2 UNP P43115 EXPRESSION TAG
SEQADV 6M9T GLY A -1 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ALA A 0 UNP P43115 EXPRESSION TAG
SEQADV 6M9T PRO A 1 UNP P43115 EXPRESSION TAG
SEQADV 6M9T GLY A 1000 UNP P43115 LINKER
SEQADV 6M9T SER A 1001 UNP P43115 LINKER
SEQADV 6M9T GLY A 1012 UNP P00720 ARG 12 VARIANT
SEQADV 6M9T THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION
SEQADV 6M9T THR A 1074 UNP P00720 ALA 74 ENGINEERED MUTATION
SEQADV 6M9T ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION
SEQADV 6M9T ARG A 1137 UNP P00720 ILE 137 VARIANT
SEQADV 6M9T GLY A 1162 UNP P00720 LINKER
SEQADV 6M9T SER A 1163 UNP P00720 LINKER
SEQADV 6M9T ALA A 286 UNP P43115 GLY 286 ENGINEERED MUTATION
SEQADV 6M9T GLY A 2000 UNP P43115 EXPRESSION TAG
SEQADV 6M9T ARG A 2001 UNP P43115 EXPRESSION TAG
SEQADV 6M9T PRO A 2002 UNP P43115 EXPRESSION TAG
SEQADV 6M9T LEU A 2003 UNP P43115 EXPRESSION TAG
SEQADV 6M9T GLU A 2004 UNP P43115 EXPRESSION TAG
SEQADV 6M9T VAL A 2005 UNP P43115 EXPRESSION TAG
SEQADV 6M9T LEU A 2006 UNP P43115 EXPRESSION TAG
SEQADV 6M9T PHE A 2007 UNP P43115 EXPRESSION TAG
SEQADV 6M9T GLN A 2008 UNP P43115 EXPRESSION TAG
SEQADV 6M9T GLY A 2009 UNP P43115 EXPRESSION TAG
SEQADV 6M9T PRO A 2010 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2011 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2012 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2013 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2014 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2015 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2016 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2017 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2018 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2019 UNP P43115 EXPRESSION TAG
SEQADV 6M9T HIS A 2020 UNP P43115 EXPRESSION TAG
SEQRES 1 A 537 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO
SEQRES 2 A 537 LYS GLU THR ARG GLY TYR GLY GLY ASP ALA PRO PHE CYS
SEQRES 3 A 537 THR ARG LEU ASN HIS SER TYR THR GLY MET TRP ALA PRO
SEQRES 4 A 537 GLU ARG SER ALA GLU ALA ARG GLY ASN LEU THR ARG PRO
SEQRES 5 A 537 PRO GLY SER GLY GLU ASP CYS GLY SER VAL SER VAL ALA
SEQRES 6 A 537 PHE PRO ILE THR MET LEU LEU THR GLY PHE VAL GLY ASN
SEQRES 7 A 537 ALA LEU ALA MET LEU LEU VAL SER ARG SER TYR ARG ARG
SEQRES 8 A 537 ARG GLU SER LYS ARG LYS LYS SER PHE LEU LEU CYS ILE
SEQRES 9 A 537 GLY TRP LEU ALA LEU THR ASP LEU VAL GLY GLN LEU LEU
SEQRES 10 A 537 THR THR PRO VAL VAL ILE VAL VAL TYR LEU SER LYS GLN
SEQRES 11 A 537 ARG TRP GLU HIS ILE ASP PRO SER GLY ARG LEU CYS THR
SEQRES 12 A 537 PHE PHE GLY LEU THR MET THR VAL PHE GLY LEU SER SER
SEQRES 13 A 537 LEU PHE ILE ALA SER ALA MET ALA VAL GLU ARG ALA LEU
SEQRES 14 A 537 ALA ILE ARG ALA PRO HIS TRP TYR ALA SER HIS MET LYS
SEQRES 15 A 537 THR ARG ALA THR ARG ALA VAL LEU LEU GLY VAL TRP LEU
SEQRES 16 A 537 ALA VAL LEU ALA PHE ALA LEU LEU PRO VAL LEU GLY VAL
SEQRES 17 A 537 GLY GLN TYR THR VAL GLN TRP PRO GLY THR TRP CYS PHE
SEQRES 18 A 537 ILE SER THR GLY ARG GLY GLY ASN GLY THR SER SER SER
SEQRES 19 A 537 HIS ASN TRP GLY ASN LEU PHE PHE ALA SER ALA PHE ALA
SEQRES 20 A 537 PHE LEU GLY LEU LEU ALA LEU THR VAL THR PHE SER CYS
SEQRES 21 A 537 ASN LEU ALA THR ILE LYS ALA LEU VAL SER ARG GLY SER
SEQRES 22 A 537 ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG
SEQRES 23 A 537 LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR ILE
SEQRES 24 A 537 GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU ASN
SEQRES 25 A 537 ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN
SEQRES 26 A 537 THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU
SEQRES 27 A 537 PHE ASN GLN ASP VAL ASP ALA THR VAL ARG GLY ILE LEU
SEQRES 28 A 537 ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP
SEQRES 29 A 537 ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE GLN
SEQRES 30 A 537 MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER LEU
SEQRES 31 A 537 ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL
SEQRES 32 A 537 ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO ASN
SEQRES 33 A 537 ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY THR
SEQRES 34 A 537 TRP ASP ALA TYR GLY SER TRP GLY ARG ILE THR THR GLU
SEQRES 35 A 537 THR ALA ILE GLN LEU MET ALA ILE MET CYS VAL LEU SER
SEQRES 36 A 537 VAL CYS TRP SER PRO LEU LEU ILE MET MET LEU LYS MET
SEQRES 37 A 537 ILE PHE ASN GLN THR SER VAL GLU HIS CYS LYS THR HIS
SEQRES 38 A 537 THR GLU LYS GLN LYS GLU CYS ASN PHE PHE LEU ILE ALA
SEQRES 39 A 537 VAL ARG LEU ALA SER LEU ASN GLN ILE LEU ASP PRO TRP
SEQRES 40 A 537 VAL TYR LEU LEU LEU ARG LYS ILE LEU GLY ARG PRO LEU
SEQRES 41 A 537 GLU VAL LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS HIS
SEQRES 42 A 537 HIS HIS HIS HIS
HET J9P A2101 26
HET SO4 A2102 5
HET SO4 A2103 5
HET SO4 A2104 5
HET SO4 A2105 5
HET OLC A2106 21
HET OLA A2107 15
HET OLA A2108 9
HET OLA A2109 16
HET OLA A2110 20
HETNAM J9P (11ALPHA,12ALPHA,13E,16S)-11,16-DIHYDROXY-16-METHYL-9-
HETNAM 2 J9P OXOPROST-13-EN-1-OIC ACID
HETNAM SO4 SULFATE ION
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM OLA OLEIC ACID
HETSYN OLC 1-OLEOYL-R-GLYCEROL
FORMUL 2 J9P C21 H36 O5
FORMUL 3 SO4 4(O4 S 2-)
FORMUL 7 OLC C21 H40 O4
FORMUL 8 OLA 4(C18 H34 O2)
FORMUL 12 HOH *5(H2 O)
HELIX 1 AA1 VAL A 52 ARG A 78 1 27
HELIX 2 AA2 LYS A 85 SER A 116 1 32
HELIX 3 AA3 ARG A 119 ASP A 124 1 6
HELIX 4 AA4 GLY A 127 ALA A 161 1 35
HELIX 5 AA5 ALA A 161 HIS A 168 1 8
HELIX 6 AA6 THR A 171 LEU A 190 1 20
HELIX 7 AA7 LEU A 190 GLY A 195 1 6
HELIX 8 AA8 TRP A 225 ARG A 259 1 35
HELIX 9 AA9 SER A 1001 GLY A 1012 1 12
HELIX 10 AB1 SER A 1038 GLY A 1051 1 14
HELIX 11 AB2 THR A 1059 ASN A 1081 1 23
HELIX 12 AB3 LYS A 1083 LEU A 1091 1 9
HELIX 13 AB4 ASP A 1092 GLY A 1107 1 16
HELIX 14 AB5 GLY A 1107 GLY A 1113 1 7
HELIX 15 AB6 PHE A 1114 GLN A 1123 1 10
HELIX 16 AB7 ARG A 1125 LYS A 1135 1 11
HELIX 17 AB8 SER A 1136 THR A 1142 1 7
HELIX 18 AB9 THR A 1142 GLY A 1156 1 15
HELIX 19 AC1 ARG A 275 PHE A 307 1 33
HELIX 20 AC2 LYS A 323 LEU A 347 1 25
HELIX 21 AC3 LEU A 347 LEU A 353 1 7
HELIX 22 AC4 GLY A 2000 LEU A 2006 1 7
SHEET 1 AA1 2 TYR A 199 GLN A 202 0
SHEET 2 AA1 2 TRP A 207 ILE A 210 -1 O TRP A 207 N GLN A 202
SHEET 1 AA2 3 ARG A1014 LYS A1019 0
SHEET 2 AA2 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018
SHEET 3 AA2 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025
SSBOND 1 CYS A 130 CYS A 208 1555 1555 2.03
CISPEP 1 TRP A 203 PRO A 204 0 3.90
SITE 1 AC1 14 PRO A 55 THR A 106 THR A 107 TYR A 114
SITE 2 AC1 14 MET A 137 PHE A 140 GLY A 141 THR A 206
SITE 3 AC1 14 TRP A 207 TRP A 295 ARG A 333 SER A 336
SITE 4 AC1 14 GLN A 339 HOH A2202
SITE 1 AC2 7 ALA A 161 PRO A 162 HIS A 163 TRP A 164
SITE 2 AC2 7 ARG A1008 LEU A1013 HOH A2204
SITE 1 AC3 4 THR A1142 PRO A1143 ASN A1144 ARG A1145
SITE 1 AC4 1 TYR A1088
SITE 1 AC5 2 MET A 70 GLY A 93
SITE 1 AC6 3 GLN A 283 ALA A 286 VAL A 345
SITE 1 AC7 2 ALA A 286 CYS A 289
SITE 1 AC8 4 PHE A 54 MET A 58 ILE A 330 ARG A 333
CRYST1 120.800 54.850 96.800 90.00 95.83 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008278 0.000000 0.000845 0.00000
SCALE2 0.000000 0.018232 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010384 0.00000