HEADER TRANSFERASE/TRANSFERASE INHIBITOR 25-AUG-18 6MA1 TITLE CRYSTAL STRUCTURE OF HUMAN O-GLCNAC TRANSFERASE BOUND TO A PEPTIDE TITLE 2 FROM HCF-1 PRO-REPEAT 2 (11-26) AND INHIBITOR 4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: O-GLCNAC TRANSFERASE SUBUNIT P110,O-LINKED N- COMPND 6 ACETYLGLUCOSAMINE TRANSFERASE 110 KDA SUBUNIT,OGT; COMPND 7 EC: 2.4.1.255; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HOST CELL FACTOR 1 PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OGT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS OGT, O-GLCNAC, GLYCOSYLTRANSFERASE, ENZYME-INHIBITOR COMPLEX, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.E.S.MARTIN,M.B.LAZARUS,S.WALKER REVDAT 4 11-OCT-23 6MA1 1 REMARK REVDAT 3 01-JAN-20 6MA1 1 REMARK REVDAT 2 07-NOV-18 6MA1 1 JRNL REVDAT 1 17-OCT-18 6MA1 0 JRNL AUTH S.E.S.MARTIN,Z.W.TAN,H.M.ITKONEN,D.Y.DUVEAU,J.A.PAULO, JRNL AUTH 2 J.JANETZKO,P.L.BOUTZ,L.TORK,F.A.MOSS,C.J.THOMAS,S.P.GYGI, JRNL AUTH 3 M.B.LAZARUS,S.WALKER JRNL TITL STRUCTURE-BASED EVOLUTION OF LOW NANOMOLAR O-GLCNAC JRNL TITL 2 TRANSFERASE INHIBITORS. JRNL REF J. AM. CHEM. SOC. V. 140 13542 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 30285435 JRNL DOI 10.1021/JACS.8B07328 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8110 - 5.2584 1.00 2882 149 0.1643 0.2228 REMARK 3 2 5.2584 - 4.1746 1.00 2757 132 0.1663 0.1880 REMARK 3 3 4.1746 - 3.6471 1.00 2728 149 0.1763 0.2005 REMARK 3 4 3.6471 - 3.3138 1.00 2702 168 0.2192 0.2555 REMARK 3 5 3.3138 - 3.0763 1.00 2705 146 0.2549 0.3326 REMARK 3 6 3.0763 - 2.8950 1.00 2670 150 0.3001 0.3217 REMARK 3 7 2.8950 - 2.7500 1.00 2696 146 0.3441 0.3890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5756 REMARK 3 ANGLE : 0.422 7814 REMARK 3 CHIRALITY : 0.038 863 REMARK 3 PLANARITY : 0.002 1015 REMARK 3 DIHEDRAL : 12.461 3485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 313:341) REMARK 3 ORIGIN FOR THE GROUP (A): -44.8602 34.3411 29.4386 REMARK 3 T TENSOR REMARK 3 T11: 0.8303 T22: 0.6308 REMARK 3 T33: 0.9133 T12: -0.0722 REMARK 3 T13: 0.0942 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.6584 L22: 1.2751 REMARK 3 L33: 3.3589 L12: -0.2583 REMARK 3 L13: -0.4448 L23: 0.1430 REMARK 3 S TENSOR REMARK 3 S11: 0.3498 S12: 0.1640 S13: 0.3857 REMARK 3 S21: -0.2805 S22: -0.0162 S23: 0.1062 REMARK 3 S31: -1.1429 S32: 0.1718 S33: -0.5992 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 342:382) REMARK 3 ORIGIN FOR THE GROUP (A): -40.4032 24.3126 34.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.6088 T22: 0.5701 REMARK 3 T33: 0.5627 T12: -0.0130 REMARK 3 T13: -0.0209 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.9021 L22: 2.0604 REMARK 3 L33: 2.2414 L12: -0.5275 REMARK 3 L13: -0.4846 L23: 0.6249 REMARK 3 S TENSOR REMARK 3 S11: 0.2822 S12: -0.1048 S13: 0.2587 REMARK 3 S21: 0.2870 S22: -0.0806 S23: -0.4173 REMARK 3 S31: 0.2570 S32: 0.2020 S33: -0.2850 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 383:429) REMARK 3 ORIGIN FOR THE GROUP (A): -46.0602 11.2402 27.6277 REMARK 3 T TENSOR REMARK 3 T11: 0.6404 T22: 0.5165 REMARK 3 T33: 0.5431 T12: 0.0391 REMARK 3 T13: 0.0143 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.2000 L22: 1.7597 REMARK 3 L33: 2.5060 L12: 1.0811 REMARK 3 L13: 0.5060 L23: 0.5144 REMARK 3 S TENSOR REMARK 3 S11: 0.3790 S12: 0.0643 S13: -0.5067 REMARK 3 S21: -0.0682 S22: -0.0965 S23: -0.2030 REMARK 3 S31: 0.0581 S32: -0.1438 S33: -0.1928 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 430:474) REMARK 3 ORIGIN FOR THE GROUP (A): -52.2621 9.3906 10.5561 REMARK 3 T TENSOR REMARK 3 T11: 0.6207 T22: 0.6070 REMARK 3 T33: 0.4428 T12: 0.0214 REMARK 3 T13: 0.0161 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 1.1434 L22: 1.9522 REMARK 3 L33: 2.1604 L12: -0.2108 REMARK 3 L13: -1.2688 L23: 0.4960 REMARK 3 S TENSOR REMARK 3 S11: -0.2725 S12: 0.0553 S13: -0.1076 REMARK 3 S21: -0.0308 S22: 0.2051 S23: 0.0953 REMARK 3 S31: 0.1790 S32: -0.3015 S33: 0.1292 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 475:518) REMARK 3 ORIGIN FOR THE GROUP (A): -45.1002 22.0254 4.5253 REMARK 3 T TENSOR REMARK 3 T11: 0.6039 T22: 0.6739 REMARK 3 T33: 0.5142 T12: -0.0538 REMARK 3 T13: 0.0293 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.8399 L22: 2.3289 REMARK 3 L33: 2.0121 L12: 0.4238 REMARK 3 L13: 0.5648 L23: -0.6319 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.1421 S13: 0.0144 REMARK 3 S21: -0.2645 S22: 0.2336 S23: -0.2091 REMARK 3 S31: -0.1956 S32: -0.0156 S33: -0.2776 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 519:654) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2397 16.4347 9.5178 REMARK 3 T TENSOR REMARK 3 T11: 0.5396 T22: 0.8237 REMARK 3 T33: 1.0071 T12: 0.0538 REMARK 3 T13: -0.1543 T23: -0.2586 REMARK 3 L TENSOR REMARK 3 L11: 0.8693 L22: 1.2682 REMARK 3 L33: 1.8404 L12: 0.6334 REMARK 3 L13: 0.1061 L23: 0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.1790 S12: -0.2537 S13: 0.3152 REMARK 3 S21: 0.1859 S22: 0.3902 S23: -0.8168 REMARK 3 S31: 0.0573 S32: 0.4731 S33: -0.2141 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 655:706) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9866 15.0562 -5.7107 REMARK 3 T TENSOR REMARK 3 T11: 0.6157 T22: 0.6215 REMARK 3 T33: 0.6303 T12: -0.0572 REMARK 3 T13: 0.0978 T23: -0.1478 REMARK 3 L TENSOR REMARK 3 L11: 2.5651 L22: 2.6142 REMARK 3 L33: 0.9904 L12: 0.1692 REMARK 3 L13: -0.1084 L23: -0.4646 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: -0.0635 S13: 0.5677 REMARK 3 S21: -0.5765 S22: 0.2564 S23: -0.6455 REMARK 3 S31: -0.1669 S32: 0.3220 S33: -0.3644 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 707:742) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9489 -20.9855 -15.0728 REMARK 3 T TENSOR REMARK 3 T11: 0.9156 T22: 0.5827 REMARK 3 T33: 0.6950 T12: 0.0068 REMARK 3 T13: 0.1619 T23: -0.1902 REMARK 3 L TENSOR REMARK 3 L11: 2.0038 L22: 2.3827 REMARK 3 L33: 1.3943 L12: -1.3888 REMARK 3 L13: -0.6666 L23: -0.7375 REMARK 3 S TENSOR REMARK 3 S11: -0.3689 S12: 0.0582 S13: -0.0022 REMARK 3 S21: 0.3332 S22: 0.0901 S23: 0.1663 REMARK 3 S31: 0.4007 S32: -0.0007 S33: 0.3271 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 743:784) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1361 -24.8594 -13.0589 REMARK 3 T TENSOR REMARK 3 T11: 0.8871 T22: 0.6861 REMARK 3 T33: 0.9646 T12: 0.0495 REMARK 3 T13: 0.0457 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 3.5129 L22: 3.4789 REMARK 3 L33: 5.6277 L12: -0.7762 REMARK 3 L13: -0.3192 L23: -0.6541 REMARK 3 S TENSOR REMARK 3 S11: 0.5850 S12: 0.5215 S13: -0.6552 REMARK 3 S21: -0.0703 S22: 0.5480 S23: 0.6627 REMARK 3 S31: 0.1422 S32: -0.1168 S33: -1.0494 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 785:849) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5146 -12.8181 -3.2446 REMARK 3 T TENSOR REMARK 3 T11: 0.6771 T22: 0.6087 REMARK 3 T33: 0.5952 T12: 0.0942 REMARK 3 T13: 0.0619 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 1.8275 L22: 2.3918 REMARK 3 L33: 1.3252 L12: -0.4536 REMARK 3 L13: -0.0859 L23: 0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.1349 S12: 0.1230 S13: -0.0999 REMARK 3 S21: -0.0636 S22: 0.1045 S23: -0.3806 REMARK 3 S31: 0.4479 S32: 0.2845 S33: 0.0386 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 850:876) REMARK 3 ORIGIN FOR THE GROUP (A): -47.0598 -4.8989 -7.6704 REMARK 3 T TENSOR REMARK 3 T11: 0.6527 T22: 0.5107 REMARK 3 T33: 0.5606 T12: -0.0703 REMARK 3 T13: -0.0246 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.6589 L22: 1.8058 REMARK 3 L33: 2.1819 L12: 0.0046 REMARK 3 L13: 0.6640 L23: -1.1435 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.1070 S13: 0.1847 REMARK 3 S21: 0.0226 S22: 0.0432 S23: 0.3282 REMARK 3 S31: -0.1629 S32: -0.0825 S33: 0.1768 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 877:1003) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0288 -0.1248 -12.7091 REMARK 3 T TENSOR REMARK 3 T11: 0.6421 T22: 0.5307 REMARK 3 T33: 0.3964 T12: -0.0733 REMARK 3 T13: 0.0693 T23: -0.0797 REMARK 3 L TENSOR REMARK 3 L11: 1.6038 L22: 3.7850 REMARK 3 L33: 1.5581 L12: -0.5025 REMARK 3 L13: -0.0177 L23: -0.5078 REMARK 3 S TENSOR REMARK 3 S11: -0.1129 S12: 0.2994 S13: -0.0012 REMARK 3 S21: -0.4978 S22: 0.2096 S23: -0.2598 REMARK 3 S31: 0.1908 S32: -0.0218 S33: -0.0525 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 1004:1028) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0905 25.1996 -6.3806 REMARK 3 T TENSOR REMARK 3 T11: 0.6312 T22: 0.7831 REMARK 3 T33: 1.1675 T12: -0.0958 REMARK 3 T13: 0.0850 T23: -0.2493 REMARK 3 L TENSOR REMARK 3 L11: 3.8542 L22: 4.9892 REMARK 3 L33: 1.7360 L12: -1.8189 REMARK 3 L13: 0.3172 L23: -0.3356 REMARK 3 S TENSOR REMARK 3 S11: -0.3072 S12: 0.2790 S13: 0.8739 REMARK 3 S21: -0.6537 S22: 0.6976 S23: -2.5403 REMARK 3 S31: -0.5720 S32: 0.7791 S33: -0.4891 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000234549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20214 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.21100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4N39 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.86733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.43367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.43367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.86733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 309 REMARK 465 PRO A 310 REMARK 465 GLY A 311 REMARK 465 SER A 312 REMARK 465 SER A 715 REMARK 465 ASN A 716 REMARK 465 GLY A 717 REMARK 465 HIS A 718 REMARK 465 LYS A 747 REMARK 465 CYS A 748 REMARK 465 PRO A 749 REMARK 465 ASP A 750 REMARK 465 GLY A 751 REMARK 465 GLY A 752 REMARK 465 ASP A 753 REMARK 465 ASN A 754 REMARK 465 ALA A 755 REMARK 465 ASP A 756 REMARK 465 SER A 757 REMARK 465 SER A 758 REMARK 465 ASN A 759 REMARK 465 THR A 760 REMARK 465 ALA A 761 REMARK 465 PRO A 1029 REMARK 465 VAL A 1030 REMARK 465 GLU A 1031 REMARK 465 THR B 11 REMARK 465 HIS B 12 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 SER B 25 REMARK 465 ASN B 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 424 OG SER A 427 2.14 REMARK 500 O SER A 674 OH TYR A 688 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 349 33.97 -88.72 REMARK 500 TRP A 469 55.04 -96.04 REMARK 500 TYR A 632 65.51 -104.35 REMARK 500 LEU A 653 -51.74 74.33 REMARK 500 THR A 669 -147.79 -141.26 REMARK 500 HIS A 691 -74.63 -116.46 REMARK 500 ASN A 722 27.24 -150.50 REMARK 500 ASP A 730 35.91 -97.96 REMARK 500 ASN A 804 101.00 -160.53 REMARK 500 CYS A 955 74.32 -117.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JA4 A 1101 DBREF 6MA1 A 313 1031 UNP O15294 OGT1_HUMAN 197 915 DBREF 6MA1 B 11 26 PDB 6MA1 6MA1 11 26 SEQADV 6MA1 GLY A 309 UNP O15294 EXPRESSION TAG SEQADV 6MA1 PRO A 310 UNP O15294 EXPRESSION TAG SEQADV 6MA1 GLY A 311 UNP O15294 EXPRESSION TAG SEQADV 6MA1 SER A 312 UNP O15294 EXPRESSION TAG SEQRES 1 A 723 GLY PRO GLY SER CYS PRO THR HIS ALA ASP SER LEU ASN SEQRES 2 A 723 ASN LEU ALA ASN ILE LYS ARG GLU GLN GLY ASN ILE GLU SEQRES 3 A 723 GLU ALA VAL ARG LEU TYR ARG LYS ALA LEU GLU VAL PHE SEQRES 4 A 723 PRO GLU PHE ALA ALA ALA HIS SER ASN LEU ALA SER VAL SEQRES 5 A 723 LEU GLN GLN GLN GLY LYS LEU GLN GLU ALA LEU MET HIS SEQRES 6 A 723 TYR LYS GLU ALA ILE ARG ILE SER PRO THR PHE ALA ASP SEQRES 7 A 723 ALA TYR SER ASN MET GLY ASN THR LEU LYS GLU MET GLN SEQRES 8 A 723 ASP VAL GLN GLY ALA LEU GLN CYS TYR THR ARG ALA ILE SEQRES 9 A 723 GLN ILE ASN PRO ALA PHE ALA ASP ALA HIS SER ASN LEU SEQRES 10 A 723 ALA SER ILE HIS LYS ASP SER GLY ASN ILE PRO GLU ALA SEQRES 11 A 723 ILE ALA SER TYR ARG THR ALA LEU LYS LEU LYS PRO ASP SEQRES 12 A 723 PHE PRO ASP ALA TYR CYS ASN LEU ALA HIS CYS LEU GLN SEQRES 13 A 723 ILE VAL CYS ASP TRP THR ASP TYR ASP GLU ARG MET LYS SEQRES 14 A 723 LYS LEU VAL SER ILE VAL ALA ASP GLN LEU GLU LYS ASN SEQRES 15 A 723 ARG LEU PRO SER VAL HIS PRO HIS HIS SER MET LEU TYR SEQRES 16 A 723 PRO LEU SER HIS GLY PHE ARG LYS ALA ILE ALA GLU ARG SEQRES 17 A 723 HIS GLY ASN LEU CYS LEU ASP LYS ILE ASN VAL LEU HIS SEQRES 18 A 723 LYS PRO PRO TYR GLU HIS PRO LYS ASP LEU LYS LEU SER SEQRES 19 A 723 ASP GLY ARG LEU ARG VAL GLY TYR VAL SER SER ASP PHE SEQRES 20 A 723 GLY ASN HIS PRO THR SER HIS LEU MET GLN SER ILE PRO SEQRES 21 A 723 GLY MET HIS ASN PRO ASP LYS PHE GLU VAL PHE CYS TYR SEQRES 22 A 723 ALA LEU SER PRO ASP ASP GLY THR ASN PHE ARG VAL LYS SEQRES 23 A 723 VAL MET ALA GLU ALA ASN HIS PHE ILE ASP LEU SER GLN SEQRES 24 A 723 ILE PRO CYS ASN GLY LYS ALA ALA ASP ARG ILE HIS GLN SEQRES 25 A 723 ASP GLY ILE HIS ILE LEU VAL ASN MET ASN GLY TYR THR SEQRES 26 A 723 LYS GLY ALA ARG ASN GLU LEU PHE ALA LEU ARG PRO ALA SEQRES 27 A 723 PRO ILE GLN ALA MET TRP LEU GLY TYR PRO GLY THR SER SEQRES 28 A 723 GLY ALA LEU PHE MET ASP TYR ILE ILE THR ASP GLN GLU SEQRES 29 A 723 THR SER PRO ALA GLU VAL ALA GLU GLN TYR SER GLU LYS SEQRES 30 A 723 LEU ALA TYR MET PRO HIS THR PHE PHE ILE GLY ASP HIS SEQRES 31 A 723 ALA ASN MET PHE PRO HIS LEU LYS LYS LYS ALA VAL ILE SEQRES 32 A 723 ASP PHE LYS SER ASN GLY HIS ILE TYR ASP ASN ARG ILE SEQRES 33 A 723 VAL LEU ASN GLY ILE ASP LEU LYS ALA PHE LEU ASP SER SEQRES 34 A 723 LEU PRO ASP VAL LYS ILE VAL LYS MET LYS CYS PRO ASP SEQRES 35 A 723 GLY GLY ASP ASN ALA ASP SER SER ASN THR ALA LEU ASN SEQRES 36 A 723 MET PRO VAL ILE PRO MET ASN THR ILE ALA GLU ALA VAL SEQRES 37 A 723 ILE GLU MET ILE ASN ARG GLY GLN ILE GLN ILE THR ILE SEQRES 38 A 723 ASN GLY PHE SER ILE SER ASN GLY LEU ALA THR THR GLN SEQRES 39 A 723 ILE ASN ASN LYS ALA ALA THR GLY GLU GLU VAL PRO ARG SEQRES 40 A 723 THR ILE ILE VAL THR THR ARG SER GLN TYR GLY LEU PRO SEQRES 41 A 723 GLU ASP ALA ILE VAL TYR CYS ASN PHE ASN GLN LEU TYR SEQRES 42 A 723 LYS ILE ASP PRO SER THR LEU GLN MET TRP ALA ASN ILE SEQRES 43 A 723 LEU LYS ARG VAL PRO ASN SER VAL LEU TRP LEU LEU ARG SEQRES 44 A 723 PHE PRO ALA VAL GLY GLU PRO ASN ILE GLN GLN TYR ALA SEQRES 45 A 723 GLN ASN MET GLY LEU PRO GLN ASN ARG ILE ILE PHE SER SEQRES 46 A 723 PRO VAL ALA PRO LYS GLU GLU HIS VAL ARG ARG GLY GLN SEQRES 47 A 723 LEU ALA ASP VAL CYS LEU ASP THR PRO LEU CYS ASN GLY SEQRES 48 A 723 HIS THR THR GLY MET ASP VAL LEU TRP ALA GLY THR PRO SEQRES 49 A 723 MET VAL THR MET PRO GLY GLU THR LEU ALA SER ARG VAL SEQRES 50 A 723 ALA ALA SER GLN LEU THR CYS LEU GLY CYS LEU GLU LEU SEQRES 51 A 723 ILE ALA LYS ASN ARG GLN GLU TYR GLU ASP ILE ALA VAL SEQRES 52 A 723 LYS LEU GLY THR ASP LEU GLU TYR LEU LYS LYS VAL ARG SEQRES 53 A 723 GLY LYS VAL TRP LYS GLN ARG ILE SER SER PRO LEU PHE SEQRES 54 A 723 ASN THR LYS GLN TYR THR MET GLU LEU GLU ARG LEU TYR SEQRES 55 A 723 LEU GLN MET TRP GLU HIS TYR ALA ALA GLY ASN LYS PRO SEQRES 56 A 723 ASP HIS MET ILE LYS PRO VAL GLU SEQRES 1 B 16 THR HIS GLU THR GLY THR THR ASN THR ALA THR THR ALA SEQRES 2 B 16 THR SER ASN HET JA4 A1101 59 HETNAM JA4 N-[(2R)-2-{[(7-CHLORO-2-OXO-1,2-DIHYDROQUINOLIN-6-YL) HETNAM 2 JA4 SULFONYL]AMINO}-2-(2-METHOXYPHENYL)ACETYL]-N- HETNAM 3 JA4 [(THIOPHEN-2-YL)METHYL]GLYCINE FORMUL 3 JA4 C25 H22 CL N3 O7 S2 FORMUL 4 HOH *41(H2 O) HELIX 1 AA1 CYS A 313 GLN A 330 1 18 HELIX 2 AA2 ASN A 332 PHE A 347 1 16 HELIX 3 AA3 PHE A 350 GLN A 364 1 15 HELIX 4 AA4 LYS A 366 SER A 381 1 16 HELIX 5 AA5 PHE A 384 MET A 398 1 15 HELIX 6 AA6 ASP A 400 ASN A 415 1 16 HELIX 7 AA7 PHE A 418 GLY A 433 1 16 HELIX 8 AA8 ASN A 434 LYS A 449 1 16 HELIX 9 AA9 PHE A 452 VAL A 466 1 15 HELIX 10 AB1 ASP A 471 LYS A 489 1 19 HELIX 11 AB2 HIS A 496 MET A 501 1 6 HELIX 12 AB3 SER A 506 VAL A 527 1 22 HELIX 13 AB4 THR A 560 GLN A 565 1 6 HELIX 14 AB5 SER A 566 HIS A 571 1 6 HELIX 15 AB6 THR A 589 ALA A 599 1 11 HELIX 16 AB7 SER A 606 ILE A 608 5 3 HELIX 17 AB8 CYS A 610 ASP A 621 1 12 HELIX 18 AB9 ASN A 638 LEU A 643 1 6 HELIX 19 AC1 PRO A 675 TYR A 682 5 8 HELIX 20 AC2 ASP A 697 PHE A 702 1 6 HELIX 21 AC3 PRO A 703 LYS A 706 5 4 HELIX 22 AC4 ASP A 730 SER A 737 1 8 HELIX 23 AC5 ASN A 770 GLY A 783 1 14 HELIX 24 AC6 ALA A 799 ASN A 804 1 6 HELIX 25 AC7 ASN A 804 THR A 809 1 6 HELIX 26 AC8 SER A 823 GLY A 826 5 4 HELIX 27 AC9 GLN A 839 ILE A 843 5 5 HELIX 28 AD1 ASP A 844 VAL A 858 1 15 HELIX 29 AD2 VAL A 871 MET A 883 1 13 HELIX 30 AD3 PRO A 886 ASN A 888 5 3 HELIX 31 AD4 PRO A 897 ARG A 904 1 8 HELIX 32 AD5 GLY A 905 ALA A 908 5 4 HELIX 33 AD6 GLY A 919 ALA A 929 1 11 HELIX 34 AD7 ARG A 944 GLY A 954 1 11 HELIX 35 AD8 CYS A 955 ILE A 959 5 5 HELIX 36 AD9 ASN A 962 ASP A 976 1 15 HELIX 37 AE1 ASP A 976 SER A 994 1 19 HELIX 38 AE2 PRO A 995 PHE A 997 5 3 HELIX 39 AE3 ASN A 998 GLY A 1020 1 23 SHEET 1 AA1 7 HIS A 601 ASP A 604 0 SHEET 2 AA1 7 PHE A 576 ALA A 582 1 N CYS A 580 O ILE A 603 SHEET 3 AA1 7 LEU A 546 SER A 552 1 N TYR A 550 O TYR A 581 SHEET 4 AA1 7 ILE A 625 ASN A 628 1 O VAL A 627 N GLY A 549 SHEET 5 AA1 7 ILE A 648 TRP A 652 1 O ALA A 650 N ASN A 628 SHEET 6 AA1 7 TYR A 666 THR A 669 1 O ILE A 668 N MET A 651 SHEET 7 AA1 7 LYS A 685 TYR A 688 1 O ALA A 687 N THR A 669 SHEET 1 AA2 7 LYS A 742 VAL A 744 0 SHEET 2 AA2 7 MET A 764 ILE A 767 -1 O VAL A 766 N LYS A 742 SHEET 3 AA2 7 ALA A 709 ILE A 711 1 N VAL A 710 O ILE A 767 SHEET 4 AA2 7 ILE A 724 ASN A 727 -1 O LEU A 726 N ALA A 709 SHEET 5 AA2 7 ILE A 817 THR A 821 -1 O THR A 820 N VAL A 725 SHEET 6 AA2 7 PHE A 792 ASN A 796 1 N SER A 795 O ILE A 817 SHEET 7 AA2 7 GLN A 786 ILE A 789 -1 N ILE A 787 O ILE A 794 SHEET 1 AA3 5 ILE A 890 SER A 893 0 SHEET 2 AA3 5 SER A 861 LEU A 866 1 N LEU A 863 O ILE A 891 SHEET 3 AA3 5 ILE A 832 ASN A 836 1 N TYR A 834 O TRP A 864 SHEET 4 AA3 5 VAL A 910 LEU A 912 1 O LEU A 912 N CYS A 835 SHEET 5 AA3 5 MET A 933 VAL A 934 1 O VAL A 934 N CYS A 911 CISPEP 1 PHE A 868 PRO A 869 0 -3.14 SITE 1 AC1 11 PRO A 559 HIS A 562 PHE A 837 GLN A 839 SITE 2 AC1 11 LEU A 866 PHE A 868 VAL A 895 ALA A 896 SITE 3 AC1 11 LYS A 898 HIS A 901 ARG A 904 CRYST1 100.303 100.303 130.301 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009970 0.005756 0.000000 0.00000 SCALE2 0.000000 0.011512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007675 0.00000