HEADER CALMODULIN-BINDING PROTEIN 29-AUG-18 6MBA TITLE CRYSTAL STRUCTURE OF HUMAN NAV1.4 CTERMINAL DOMAIN IN COMPLEX WITH APO TITLE 2 CALMODULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM CHANNEL PROTEIN TYPE 4 SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN; COMPND 5 SYNONYM: SKM1,SODIUM CHANNEL PROTEIN SKELETAL MUSCLE SUBUNIT ALPHA, COMPND 6 SODIUM CHANNEL PROTEIN TYPE IV SUBUNIT ALPHA,VOLTAGE-GATED SODIUM COMPND 7 CHANNEL SUBUNIT ALPHA NAV1.4; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CALMODULIN-1; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCN4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: CALM1, CALM, CAM, CAM1, CAMI; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-24 KEYWDS SCN4A, VOLTAGE GATED SODIUM CHANNEL, CALMODULIN, MEMBRANE PROTEIN, KEYWDS 2 CALMODULIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.YODER,S.B.GABELLI,L.M.AMZEL REVDAT 4 11-OCT-23 6MBA 1 REMARK REVDAT 3 04-DEC-19 6MBA 1 REMARK REVDAT 2 17-APR-19 6MBA 1 JRNL REVDAT 1 10-APR-19 6MBA 0 JRNL AUTH J.B.YODER,M.BEN-JOHNY,F.FARINELLI,L.SRINIVASAN, JRNL AUTH 2 S.R.SHOEMAKER,G.F.TOMASELLI,S.B.GABELLI,L.M.AMZEL JRNL TITL CA2+-DEPENDENT REGULATION OF SODIUM CHANNELS NAV1.4 AND JRNL TITL 2 NAV1.5 IS CONTROLLED BY THE POST-IQ MOTIF. JRNL REF NAT COMMUN V. 10 1514 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30944319 JRNL DOI 10.1038/S41467-019-09570-7 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 42664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8887 - 4.4346 0.90 2678 131 0.1801 0.1790 REMARK 3 2 4.4346 - 3.5203 0.85 2504 133 0.1611 0.1872 REMARK 3 3 3.5203 - 3.0754 0.90 2624 138 0.1900 0.2225 REMARK 3 4 3.0754 - 2.7943 0.91 2714 141 0.2090 0.2610 REMARK 3 5 2.7943 - 2.5940 0.93 2723 145 0.2235 0.2706 REMARK 3 6 2.5940 - 2.4411 0.93 2706 141 0.2268 0.2705 REMARK 3 7 2.4411 - 2.3189 0.95 2812 148 0.2129 0.2875 REMARK 3 8 2.3189 - 2.2179 0.95 2782 144 0.2182 0.2369 REMARK 3 9 2.2179 - 2.1325 0.90 2715 146 0.2253 0.2504 REMARK 3 10 2.1325 - 2.0590 0.89 2614 136 0.2440 0.3440 REMARK 3 11 2.0590 - 1.9946 0.91 2689 140 0.2592 0.2734 REMARK 3 12 1.9946 - 1.9376 0.93 2677 147 0.2723 0.2858 REMARK 3 13 1.9376 - 1.8865 0.95 2827 146 0.2691 0.2924 REMARK 3 14 1.8865 - 1.8405 0.95 2820 148 0.3002 0.3346 REMARK 3 15 1.8405 - 1.7987 0.89 2659 136 0.3081 0.3152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2264 REMARK 3 ANGLE : 1.384 3039 REMARK 3 CHIRALITY : 0.091 334 REMARK 3 PLANARITY : 0.010 400 REMARK 3 DIHEDRAL : 26.329 875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4791 5.9817 33.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.1642 REMARK 3 T33: 0.2079 T12: -0.0164 REMARK 3 T13: 0.0522 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.7136 L22: 4.3158 REMARK 3 L33: 4.6018 L12: -0.6794 REMARK 3 L13: 1.4718 L23: 0.6194 REMARK 3 S TENSOR REMARK 3 S11: -0.1455 S12: 0.1002 S13: 0.2590 REMARK 3 S21: -0.3315 S22: 0.0462 S23: -0.4121 REMARK 3 S31: -0.2878 S32: 0.1716 S33: 0.1005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1612 THROUGH 1688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5189 -5.4145 19.6744 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.3546 REMARK 3 T33: 0.2951 T12: -0.0350 REMARK 3 T13: -0.0524 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 4.0685 L22: 4.5183 REMARK 3 L33: 4.5770 L12: 0.6665 REMARK 3 L13: -0.1207 L23: 0.4760 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: 0.5042 S13: -0.2680 REMARK 3 S21: -0.4777 S22: 0.0134 S23: 0.6351 REMARK 3 S31: 0.1775 S32: -0.7049 S33: 0.0914 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1691 THROUGH 1706 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1520 5.9058 13.9972 REMARK 3 T TENSOR REMARK 3 T11: 0.9535 T22: 1.4549 REMARK 3 T33: 1.1746 T12: 0.3331 REMARK 3 T13: -0.3553 T23: 0.2036 REMARK 3 L TENSOR REMARK 3 L11: 9.9745 L22: 4.0996 REMARK 3 L33: 4.2236 L12: -0.1254 REMARK 3 L13: -5.8800 L23: -1.6799 REMARK 3 S TENSOR REMARK 3 S11: 0.1059 S12: 1.5059 S13: 1.4721 REMARK 3 S21: -0.4143 S22: 0.3576 S23: 0.8461 REMARK 3 S31: -1.1542 S32: -3.0353 S33: -0.5356 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1714 THROUGH 1748 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3499 0.2585 28.2335 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.1501 REMARK 3 T33: 0.2224 T12: -0.0005 REMARK 3 T13: 0.0774 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.6886 L22: 3.1309 REMARK 3 L33: 6.4515 L12: 0.7879 REMARK 3 L13: 1.0752 L23: 0.3438 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.3985 S13: 0.0311 REMARK 3 S21: -0.3432 S22: -0.1358 S23: -0.1940 REMARK 3 S31: -0.0666 S32: 0.2811 S33: 0.1031 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2835 -4.2882 6.2505 REMARK 3 T TENSOR REMARK 3 T11: 0.7978 T22: 0.5545 REMARK 3 T33: 0.4231 T12: -0.0151 REMARK 3 T13: 0.0992 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 7.7811 L22: 7.5532 REMARK 3 L33: 8.4329 L12: -0.2439 REMARK 3 L13: -0.0639 L23: 4.0187 REMARK 3 S TENSOR REMARK 3 S11: -0.1152 S12: 0.9001 S13: -0.1847 REMARK 3 S21: -0.9476 S22: -0.0032 S23: -0.9749 REMARK 3 S31: 0.0855 S32: 0.4366 S33: 0.0971 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : VDCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 44.875 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 1.605 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.58 REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OVN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 20% PEG 6000, 1.0M REMARK 280 LICL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.36000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.52050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.36000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.52050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 333 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 364 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1594 REMARK 465 PRO A 1595 REMARK 465 LEU A 1596 REMARK 465 GLY A 1597 REMARK 465 SER A 1598 REMARK 465 GLU A 1599 REMARK 465 ASN A 1600 REMARK 465 PHE A 1601 REMARK 465 ASN A 1602 REMARK 465 VAL A 1603 REMARK 465 ALA A 1604 REMARK 465 THR A 1605 REMARK 465 GLU A 1606 REMARK 465 GLU A 1607 REMARK 465 SER A 1608 REMARK 465 SER A 1609 REMARK 465 GLU A 1610 REMARK 465 PRO A 1611 REMARK 465 ALA A 1707 REMARK 465 ALA A 1708 REMARK 465 ASN A 1709 REMARK 465 PRO A 1710 REMARK 465 SER A 1711 REMARK 465 LYS A 1712 REMARK 465 VAL A 1713 REMARK 465 GLN A 1749 REMARK 465 ALA A 1750 REMARK 465 SER A 1751 REMARK 465 TYR A 1752 REMARK 465 MET A 1753 REMARK 465 TYR A 1754 REMARK 465 ARG A 1755 REMARK 465 HIS A 1756 REMARK 465 SER A 1757 REMARK 465 HIS A 1758 REMARK 465 ASP A 1759 REMARK 465 GLY A 1760 REMARK 465 SER A 1761 REMARK 465 GLY A 1762 REMARK 465 ASP A 1763 REMARK 465 ASP A 1764 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1717 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1630 8.27 -64.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 205 DBREF 6MBA A 1599 1764 UNP P35499 SCN4A_HUMAN 1599 1764 DBREF 6MBA B 0 148 UNP P0DP29 CALM1_RAT 1 149 SEQADV 6MBA GLY A 1594 UNP P35499 EXPRESSION TAG SEQADV 6MBA PRO A 1595 UNP P35499 EXPRESSION TAG SEQADV 6MBA LEU A 1596 UNP P35499 EXPRESSION TAG SEQADV 6MBA GLY A 1597 UNP P35499 EXPRESSION TAG SEQADV 6MBA SER A 1598 UNP P35499 EXPRESSION TAG SEQRES 1 A 171 GLY PRO LEU GLY SER GLU ASN PHE ASN VAL ALA THR GLU SEQRES 2 A 171 GLU SER SER GLU PRO LEU GLY GLU ASP ASP PHE GLU MET SEQRES 3 A 171 PHE TYR GLU THR TRP GLU LYS PHE ASP PRO ASP ALA THR SEQRES 4 A 171 GLN PHE ILE ALA TYR SER ARG LEU SER ASP PHE VAL ASP SEQRES 5 A 171 THR LEU GLN GLU PRO LEU ARG ILE ALA LYS PRO ASN LYS SEQRES 6 A 171 ILE LYS LEU ILE THR LEU ASP LEU PRO MET VAL PRO GLY SEQRES 7 A 171 ASP LYS ILE HIS CYS LEU ASP ILE LEU PHE ALA LEU THR SEQRES 8 A 171 LYS GLU VAL LEU GLY ASP SER GLY GLU MET ASP ALA LEU SEQRES 9 A 171 LYS GLN THR MET GLU GLU LYS PHE MET ALA ALA ASN PRO SEQRES 10 A 171 SER LYS VAL SER TYR GLU PRO ILE THR THR THR LEU LYS SEQRES 11 A 171 ARG LYS HIS GLU GLU VAL CYS ALA ILE LYS ILE GLN ARG SEQRES 12 A 171 ALA TYR ARG ARG HIS LEU LEU GLN ARG SER MET LYS GLN SEQRES 13 A 171 ALA SER TYR MET TYR ARG HIS SER HIS ASP GLY SER GLY SEQRES 14 A 171 ASP ASP SEQRES 1 B 149 MET ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE SEQRES 2 B 149 LYS GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY SEQRES 3 B 149 THR ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER SEQRES 4 B 149 LEU GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET SEQRES 5 B 149 ILE ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP SEQRES 6 B 149 PHE PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS SEQRES 7 B 149 ASP THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG SEQRES 8 B 149 VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA SEQRES 9 B 149 GLU LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU SEQRES 10 B 149 THR ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP SEQRES 11 B 149 ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL SEQRES 12 B 149 GLN MET MET THR ALA LYS HET CL A2001 1 HET CL A2002 1 HET CL B 201 1 HET CL B 202 1 HET EDO B 203 4 HET CO3 B 204 4 HET TRS B 205 8 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CO3 CARBONATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 3 CL 4(CL 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 CO3 C O3 2- FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 10 HOH *120(H2 O) HELIX 1 AA1 GLY A 1613 ASP A 1628 1 16 HELIX 2 AA2 ARG A 1639 LEU A 1647 1 9 HELIX 3 AA3 ASN A 1657 LEU A 1664 1 8 HELIX 4 AA4 CYS A 1676 GLY A 1689 1 14 HELIX 5 AA5 SER A 1691 MET A 1706 1 16 HELIX 6 AA6 THR A 1721 SER A 1746 1 26 HELIX 7 AA7 THR B 5 ASP B 20 1 16 HELIX 8 AA8 THR B 29 LEU B 39 1 11 HELIX 9 AA9 THR B 44 GLU B 54 1 11 HELIX 10 AB1 PHE B 65 ASP B 78 1 14 HELIX 11 AB2 SER B 81 VAL B 91 1 11 HELIX 12 AB3 ALA B 102 LEU B 112 1 11 HELIX 13 AB4 THR B 117 ASP B 129 1 13 HELIX 14 AB5 TYR B 138 THR B 146 1 9 SHEET 1 AA1 2 PHE A1634 ALA A1636 0 SHEET 2 AA1 2 LYS A1673 HIS A1675 -1 O ILE A1674 N ILE A1635 SHEET 1 AA2 2 PRO A1667 MET A1668 0 SHEET 2 AA2 2 THR A1719 THR A1720 -1 O THR A1719 N MET A1668 SHEET 1 AA3 2 THR B 26 THR B 28 0 SHEET 2 AA3 2 THR B 62 ASP B 64 -1 O ILE B 63 N ILE B 27 SHEET 1 AA4 2 TYR B 99 SER B 101 0 SHEET 2 AA4 2 GLN B 135 ASN B 137 -1 O VAL B 136 N ILE B 100 CISPEP 1 GLU A 1649 PRO A 1650 0 -1.88 CISPEP 2 LYS A 1655 PRO A 1656 0 -11.71 SITE 1 AC1 3 LYS A1673 ARG A1745 GLU B 123 SITE 1 AC2 3 PRO A1656 ASN A1657 LYS A1658 SITE 1 AC3 1 ASP B 24 SITE 1 AC4 1 GLU B 82 SITE 1 AC5 5 THR B 117 ASP B 118 GLU B 119 GLN B 135 SITE 2 AC5 5 HOH B 307 SITE 1 AC6 6 PHE B 92 LYS B 94 ILE B 100 SER B 101 SITE 2 AC6 6 GLU B 104 HOH B 303 SITE 1 AC7 10 PRO A1670 GLY A1671 ILE A1718 HOH A2106 SITE 2 AC7 10 ALA B 102 ARG B 106 ASP B 129 GLY B 134 SITE 3 AC7 10 HOH B 320 HOH B 358 CRYST1 112.720 29.041 94.991 90.00 123.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008872 0.000000 0.005905 0.00000 SCALE2 0.000000 0.034434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012646 0.00000