HEADER ONCOPROTEIN 30-AUG-18 6MBU TITLE CRYSTAL STRUCTURE OF WILD-TYPE KRAS (1-169) BOUND TO GDP AND MG (SPACE TITLE 2 GROUP P3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KRAS, RAS, MG, K-RAS, SMALL GTPASE, GUANINE NUCLEOTIDE, ONCOPROTEIN, KEYWDS 2 GMPPNP, GPPNHP EXPDTA X-RAY DIFFRACTION AUTHOR S.DHARMAIAH,T.H.TRAN,W.YAN,D.K.SIMANSHU REVDAT 3 11-OCT-23 6MBU 1 LINK REVDAT 2 04-DEC-19 6MBU 1 REMARK REVDAT 1 31-JUL-19 6MBU 0 JRNL AUTH S.DHARMAIAH,T.H.TRAN,S.MESSING,C.AGAMASU,W.K.GILLETTE,W.YAN, JRNL AUTH 2 T.WAYBRIGHT,P.ALEXANDER,D.ESPOSITO,D.V.NISSLEY,F.MCCORMICK, JRNL AUTH 3 A.G.STEPHEN,D.K.SIMANSHU JRNL TITL STRUCTURES OF N-TERMINALLY PROCESSED KRAS PROVIDE INSIGHT JRNL TITL 2 INTO THE ROLE OF N-ACETYLATION. JRNL REF SCI REP V. 9 10512 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31324887 JRNL DOI 10.1038/S41598-019-46846-W REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 58509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1102 - 3.9996 0.95 2548 127 0.1592 0.1967 REMARK 3 2 3.9996 - 3.1749 0.98 2612 133 0.1301 0.1778 REMARK 3 3 3.1749 - 2.7737 0.98 2606 134 0.1331 0.1638 REMARK 3 4 2.7737 - 2.5201 0.99 2665 128 0.1284 0.1730 REMARK 3 5 2.5201 - 2.3395 0.99 2593 149 0.1205 0.1685 REMARK 3 6 2.3395 - 2.2016 0.99 2642 143 0.1165 0.1542 REMARK 3 7 2.2016 - 2.0913 0.99 2662 123 0.1168 0.1730 REMARK 3 8 2.0913 - 2.0003 1.00 2663 123 0.1146 0.1660 REMARK 3 9 2.0003 - 1.9233 1.00 2662 154 0.1108 0.1657 REMARK 3 10 1.9233 - 1.8569 1.00 2657 153 0.1161 0.1555 REMARK 3 11 1.8569 - 1.7988 1.00 2653 145 0.1175 0.1822 REMARK 3 12 1.7988 - 1.7474 1.00 2617 152 0.1210 0.1889 REMARK 3 13 1.7474 - 1.7014 1.00 2702 131 0.1346 0.1984 REMARK 3 14 1.7014 - 1.6599 1.00 2658 156 0.1377 0.1896 REMARK 3 15 1.6599 - 1.6222 1.00 2635 134 0.1336 0.1917 REMARK 3 16 1.6222 - 1.5876 1.00 2658 152 0.1427 0.2084 REMARK 3 17 1.5876 - 1.5559 1.00 2659 145 0.1483 0.2094 REMARK 3 18 1.5559 - 1.5265 1.00 2685 141 0.1576 0.2411 REMARK 3 19 1.5265 - 1.4993 1.00 2641 144 0.1634 0.2090 REMARK 3 20 1.4993 - 1.4738 1.00 2677 141 0.1845 0.2494 REMARK 3 21 1.4738 - 1.4501 1.00 2650 156 0.2017 0.2412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2834 REMARK 3 ANGLE : 0.666 3847 REMARK 3 CHIRALITY : 0.056 427 REMARK 3 PLANARITY : 0.002 494 REMARK 3 DIHEDRAL : 20.839 1086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 42.092 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 1.482 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4LPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS HCL PH 8.5, REMARK 280 30% PEG 4K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 446 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 448 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 169 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 465 ASP B 69 REMARK 465 LYS B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 54 HH TYR A 71 1.59 REMARK 500 O HOH A 425 O HOH A 441 2.07 REMARK 500 O HOH A 320 O HOH A 438 2.12 REMARK 500 O HOH B 397 O HOH B 415 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 320 O HOH A 369 3565 1.95 REMARK 500 O HOH A 322 O HOH A 385 3565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 121.65 -37.38 REMARK 500 ASP A 108 74.87 -111.60 REMARK 500 LYS A 117 31.82 71.77 REMARK 500 ARG A 149 -5.35 83.96 REMARK 500 ASP B 33 119.42 -37.26 REMARK 500 LYS B 117 32.49 70.38 REMARK 500 SER B 122 47.82 -82.20 REMARK 500 ARG B 149 -5.37 88.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 204 O3B 92.8 REMARK 620 3 HOH A 311 O 81.3 95.7 REMARK 620 4 HOH A 325 O 92.7 85.8 173.8 REMARK 620 5 HOH A 332 O 171.3 89.1 90.0 96.0 REMARK 620 6 HOH A 344 O 90.6 171.7 92.3 86.5 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 26 OD1 REMARK 620 2 HOH A 380 O 98.0 REMARK 620 3 HOH A 396 O 87.6 93.4 REMARK 620 4 HOH A 411 O 81.5 177.4 89.2 REMARK 620 5 HOH A 413 O 84.0 87.2 171.6 90.2 REMARK 620 6 HOH B 327 O 163.0 98.3 96.3 82.0 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 328 O REMARK 620 2 HOH A 328 O 94.6 REMARK 620 3 HOH A 366 O 85.3 88.2 REMARK 620 4 HOH A 366 O 177.2 85.3 91.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 341 O REMARK 620 2 HOH A 382 O 89.3 REMARK 620 3 HOH B 324 O 167.5 78.5 REMARK 620 4 HOH B 369 O 111.7 147.7 78.1 REMARK 620 5 HOH B 386 O 89.4 71.0 83.6 84.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 203 O2B 93.8 REMARK 620 3 HOH B 315 O 92.9 87.0 REMARK 620 4 HOH B 326 O 82.6 93.7 175.4 REMARK 620 5 HOH B 342 O 173.0 89.4 93.5 91.0 REMARK 620 6 HOH B 366 O 88.6 172.9 86.2 93.2 88.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 DBREF 6MBU A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6MBU B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6MBU GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6MBU GLY B 0 UNP P01116 EXPRESSION TAG SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET GDP A 204 38 HET GOL A 205 14 HET MG B 201 1 HET MG B 202 1 HET GDP B 203 38 HET GOL B 204 14 HET GOL B 205 14 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 5(MG 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 13 HOH *299(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 ASN B 86 ASP B 92 1 7 HELIX 9 AA9 ASP B 92 ASP B 105 1 14 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 LYS B 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O LEU A 52 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O CYS B 51 N VAL B 44 SHEET 3 AA2 6 THR B 2 GLY B 10 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A 201 1555 1555 2.11 LINK OD1 ASN A 26 MG MG A 202 1555 1555 2.24 LINK MG MG A 201 O3B GDP A 204 1555 1555 2.06 LINK MG MG A 201 O HOH A 311 1555 1555 2.10 LINK MG MG A 201 O HOH A 325 1555 1555 2.08 LINK MG MG A 201 O HOH A 332 1555 1555 2.06 LINK MG MG A 201 O HOH A 344 1555 1555 2.13 LINK MG MG A 202 O HOH A 380 1555 1555 1.99 LINK MG MG A 202 O HOH A 396 1555 1555 2.04 LINK MG MG A 202 O HOH A 411 1555 1555 2.43 LINK MG MG A 202 O HOH A 413 1555 1555 2.39 LINK MG MG A 202 O HOH B 327 1555 1556 2.04 LINK MG MG A 203 O HOH A 328 1555 1555 2.06 LINK MG MG A 203 O HOH A 328 1555 3565 2.06 LINK MG MG A 203 O HOH A 366 1555 1555 2.12 LINK MG MG A 203 O HOH A 366 1555 3565 2.12 LINK O HOH A 341 MG MG B 202 1555 1555 2.18 LINK O HOH A 382 MG MG B 202 1555 1555 2.11 LINK OG SER B 17 MG MG B 201 1555 1555 2.09 LINK MG MG B 201 O2B GDP B 203 1555 1555 2.05 LINK MG MG B 201 O HOH B 315 1555 1555 2.09 LINK MG MG B 201 O HOH B 326 1555 1555 2.06 LINK MG MG B 201 O HOH B 342 1555 1555 2.05 LINK MG MG B 201 O HOH B 366 1555 1555 2.13 LINK MG MG B 202 O HOH B 324 1555 1555 2.40 LINK MG MG B 202 O HOH B 369 1555 1555 1.98 LINK MG MG B 202 O HOH B 386 1555 1555 2.22 SITE 1 AC1 6 SER A 17 GDP A 204 HOH A 311 HOH A 325 SITE 2 AC1 6 HOH A 332 HOH A 344 SITE 1 AC2 6 ASN A 26 HOH A 380 HOH A 396 HOH A 411 SITE 2 AC2 6 HOH A 413 HOH B 327 SITE 1 AC3 2 HOH A 328 HOH A 366 SITE 1 AC4 24 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC4 24 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC4 24 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC4 24 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC4 24 MG A 201 GOL A 205 HOH A 311 HOH A 325 SITE 6 AC4 24 HOH A 332 HOH A 348 HOH A 353 HOH A 400 SITE 1 AC5 7 GLU A 31 TYR A 32 PRO A 34 GDP A 204 SITE 2 AC5 7 HOH A 327 HOH A 337 HOH A 348 SITE 1 AC6 6 SER B 17 GDP B 203 HOH B 315 HOH B 326 SITE 2 AC6 6 HOH B 342 HOH B 366 SITE 1 AC7 6 HOH A 341 HOH A 382 ASN B 26 HOH B 324 SITE 2 AC7 6 HOH B 369 HOH B 386 SITE 1 AC8 25 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC8 25 SER B 17 ALA B 18 PHE B 28 VAL B 29 SITE 3 AC8 25 ASP B 30 ASN B 116 LYS B 117 ASP B 119 SITE 4 AC8 25 LEU B 120 SER B 145 ALA B 146 LYS B 147 SITE 5 AC8 25 MG B 201 HOH B 315 HOH B 326 HOH B 329 SITE 6 AC8 25 HOH B 342 HOH B 359 HOH B 361 HOH B 370 SITE 7 AC8 25 HOH B 400 SITE 1 AC9 8 GLN A 25 HIS A 27 TYR A 32 ASP B 119 SITE 2 AC9 8 THR B 148 GLN B 150 HOH B 302 HOH B 343 SITE 1 AD1 3 ASP B 154 TYR B 157 ARG B 161 CRYST1 84.185 84.185 41.916 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011879 0.006858 0.000000 0.00000 SCALE2 0.000000 0.013716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023857 0.00000