HEADER VIRAL PROTEIN 31-AUG-18 6MCO TITLE CRYSTAL STRUCTURE OF THE B41 SOSIP.664 ENV TRIMER WITH PGT124 AND TITLE 2 35O22 FABS, IN P23 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN GP41; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: RESIDUES 516-668; COMPND 5 SYNONYM: TM; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 35O22 FAB HEAVY CHAIN; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: SU, GLYCOPROTEIN 120, GP120; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 35O22 FAB LIGHT CHAIN; COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: SURFACE PROTEIN GP120; COMPND 18 CHAIN: G; COMPND 19 FRAGMENT: RESIDUES 30-511; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: PGT124 FAB HEAVY CHAIN; COMPND 23 CHAIN: H; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 6; COMPND 26 MOLECULE: PGT124 FAB LIGHT CHAIN; COMPND 27 CHAIN: L; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 24 ORGANISM_TAXID: 11676; SOURCE 25 GENE: ENV; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 34 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 36 MOL_ID: 6; SOURCE 37 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 38 ORGANISM_COMMON: HUMAN; SOURCE 39 ORGANISM_TAXID: 9606; SOURCE 40 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 41 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS VIRAL PROTEIN, HIV, ENVELOPE, GLYCOPROTEIN, PREFUSION TRIMER, GLYCAN, KEYWDS 2 HIV-1 GP120, HIV-1 GP41, N332 SUPERSITE, IMMUNE SYSTEM, NEUTRALIZING KEYWDS 3 ANTIBODIES, COMPLEX, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,A.SARKAR,I.A.WILSON REVDAT 4 25-DEC-24 6MCO 1 REMARK SSBOND LINK ATOM REVDAT 3 11-OCT-23 6MCO 1 HETSYN REVDAT 2 29-JUL-20 6MCO 1 COMPND REMARK HETNAM SSBOND REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 27-FEB-19 6MCO 0 JRNL AUTH S.KUMAR,A.SARKAR,P.PUGACH,R.W.SANDERS,J.P.MOORE,A.B.WARD, JRNL AUTH 2 I.A.WILSON JRNL TITL CAPTURING THE INHERENT STRUCTURAL DYNAMICS OF THE HIV-1 JRNL TITL 2 ENVELOPE GLYCOPROTEIN FUSION PEPTIDE. JRNL REF NAT COMMUN V. 10 763 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30770829 JRNL DOI 10.1038/S41467-019-08738-5 REMARK 2 REMARK 2 RESOLUTION. 3.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.307 REMARK 3 R VALUE (WORKING SET) : 0.306 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0507 - 8.4855 1.00 2804 172 0.2661 0.2627 REMARK 3 2 8.4855 - 6.7404 1.00 2749 126 0.3035 0.3027 REMARK 3 3 6.7404 - 5.8899 1.00 2702 119 0.3036 0.3205 REMARK 3 4 5.8899 - 5.3520 1.00 2684 151 0.3123 0.3052 REMARK 3 5 5.3520 - 4.9688 1.00 2683 151 0.2933 0.3161 REMARK 3 6 4.9688 - 4.6761 0.99 2648 154 0.2925 0.3422 REMARK 3 7 4.6761 - 4.4420 0.99 2613 137 0.3076 0.3817 REMARK 3 8 4.4420 - 4.2488 0.99 2645 140 0.3052 0.3467 REMARK 3 9 4.2488 - 4.0853 0.99 2677 134 0.3367 0.3771 REMARK 3 10 4.0853 - 3.9444 1.00 2661 125 0.3368 0.3456 REMARK 3 11 3.9444 - 3.8211 1.00 2655 145 0.3705 0.3925 REMARK 3 12 3.8211 - 3.7119 1.00 2651 124 0.3460 0.3762 REMARK 3 13 3.7119 - 3.6142 1.00 2672 146 0.3554 0.3935 REMARK 3 14 3.6142 - 3.5261 1.00 2668 127 0.3510 0.3521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 12621 REMARK 3 ANGLE : 0.909 17312 REMARK 3 CHIRALITY : 0.056 2131 REMARK 3 PLANARITY : 0.015 2092 REMARK 3 DIHEDRAL : 15.855 4764 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03315 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39580 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.046 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 30.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R26, 5CEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH 7.0), 8% PEG8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E, G, H, L, A, C, F, I, REMARK 350 AND CHAINS: J, K, M, N, O, P, Q, R, S, REMARK 350 AND CHAINS: T, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 547 REMARK 465 ILE B 548 REMARK 465 VAL B 549 REMARK 465 GLN B 550 REMARK 465 GLN B 551 REMARK 465 GLN B 552 REMARK 465 ASN B 553 REMARK 465 ASN B 554 REMARK 465 LEU B 555 REMARK 465 LEU B 556 REMARK 465 ARG B 557 REMARK 465 ALA B 558 REMARK 465 ILE B 559 REMARK 465 GLU B 560 REMARK 465 ALA B 561 REMARK 465 GLN B 562 REMARK 465 GLN B 563 REMARK 465 HIS B 564 REMARK 465 MET B 565 REMARK 465 LEU B 566 REMARK 465 LEU D 223 REMARK 465 PHE D 224 REMARK 465 GLN D 225 REMARK 465 GLN E 1 REMARK 465 CYS E 211 REMARK 465 SER E 212 REMARK 465 ASN G 140A REMARK 465 SER G 140B REMARK 465 THR G 140C REMARK 465 ASN G 140D REMARK 465 ALA G 140E REMARK 465 THR G 140F REMARK 465 ILE G 140G REMARK 465 SER G 140H REMARK 465 ASP G 140I REMARK 465 TRP G 140J REMARK 465 GLU G 140K REMARK 465 LYS G 140L REMARK 465 MET G 140M REMARK 465 GLU G 140N REMARK 465 GLU G 184A REMARK 465 ASN G 184B REMARK 465 LYS G 184C REMARK 465 ASN G 184D REMARK 465 ASN G 184E REMARK 465 ILE G 184F REMARK 465 ASN G 184G REMARK 465 ASN G 184H REMARK 465 THR G 184I REMARK 465 ASN G 184J REMARK 465 THR G 408 REMARK 465 GLY G 409 REMARK 465 LYS H 127 REMARK 465 LYS H 212 REMARK 465 SER H 213 REMARK 465 CYS H 214 REMARK 465 ASP H 215 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS D 33 C8 NAG F 2 1.43 REMARK 500 SG CYS E 89 SG CYS E 96 1.59 REMARK 500 CD2 HIS D 33 C8 NAG F 2 2.01 REMARK 500 CG1 ILE G 360 N TRP G 395 2.09 REMARK 500 OD1 ASP E 51 NZ LYS E 66 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 100 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ALA L 71 N - CA - CB ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 513 25.90 47.40 REMARK 500 ALA B 525 -80.59 -127.79 REMARK 500 MET B 530 87.30 -62.94 REMARK 500 MET B 535 -149.59 -151.83 REMARK 500 LEU B 545 41.56 -152.56 REMARK 500 CYS B 598 26.78 -141.73 REMARK 500 ASN B 625 -9.19 -151.17 REMARK 500 GLN B 650 -82.78 -132.03 REMARK 500 ALA D 16 -167.77 -78.82 REMARK 500 TYR D 53 -72.97 -66.24 REMARK 500 VAL D 72E -63.16 -99.72 REMARK 500 THR D 72F -167.88 -121.11 REMARK 500 SER D 100B 59.86 -145.40 REMARK 500 TYR D 101 -69.64 -107.09 REMARK 500 ASP D 144 75.46 50.66 REMARK 500 ILE E 47 -37.46 -130.62 REMARK 500 GLU E 50 -157.37 -114.07 REMARK 500 PRO E 60 1.40 -67.42 REMARK 500 THR E 84 -168.10 -165.45 REMARK 500 ASP E 138 60.86 60.13 REMARK 500 ASN E 169 34.85 -93.26 REMARK 500 LEU G 52 -169.40 -79.53 REMARK 500 ALA G 55 105.74 -162.26 REMARK 500 ASP G 57 -65.06 -102.59 REMARK 500 LYS G 59 -146.97 -119.55 REMARK 500 LEU G 122 48.56 -97.48 REMARK 500 LYS G 155 -175.78 60.63 REMARK 500 ASN G 156 106.30 -164.09 REMARK 500 THR G 163 -174.94 -69.26 REMARK 500 ASN G 190 -76.89 -80.24 REMARK 500 PHE G 210 47.99 -94.99 REMARK 500 ASN G 234 163.07 -45.57 REMARK 500 GLN G 258 -34.60 69.02 REMARK 500 GLU G 269 -156.56 57.43 REMARK 500 ASN G 276 101.59 -162.72 REMARK 500 THR G 358 -150.76 32.76 REMARK 500 ASN G 362 -168.41 -116.83 REMARK 500 SER G 364 60.65 75.26 REMARK 500 PRO G 369 -87.92 -113.48 REMARK 500 THR G 398 -126.62 56.09 REMARK 500 ARG G 399 -122.45 58.13 REMARK 500 SER G 446 148.24 -170.16 REMARK 500 ARG G 460 -128.48 57.73 REMARK 500 THR G 465 151.95 64.55 REMARK 500 GLU H 55 73.46 48.63 REMARK 500 ASN H 76 68.02 -69.98 REMARK 500 ASP H 86 0.20 -62.83 REMARK 500 PHE H 100G 36.85 -97.27 REMARK 500 SER H 125 23.43 -54.53 REMARK 500 LYS H 141 -168.14 -70.59 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 6MCO B 512 664 UNP B3UF08 B3UF08_9HIV1 516 668 DBREF 6MCO D 1 225 PDB 6MCO 6MCO 1 225 DBREF 6MCO E 1 212 PDB 6MCO 6MCO 1 212 DBREF 6MCO G 32 507 UNP B3UES2 B3UES2_9HIV1 30 511 DBREF 6MCO H 1 215 PDB 6MCO 6MCO 1 215 DBREF 6MCO L 6 213 PDB 6MCO 6MCO 6 213 SEQADV 6MCO CYS B 605 UNP B3UF08 THR 609 CONFLICT SEQADV 6MCO CYS G 501 UNP B3UES2 ALA 505 CONFLICT SEQRES 1 B 153 ALA VAL GLY LEU GLY ALA PHE ILE LEU GLY PHE LEU GLY SEQRES 2 B 153 ALA ALA GLY SER THR MET GLY ALA ALA SER MET ALA LEU SEQRES 3 B 153 THR VAL GLN ALA ARG LEU LEU LEU SER GLY ILE VAL GLN SEQRES 4 B 153 GLN GLN ASN ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN SEQRES 5 B 153 HIS MET LEU GLN LEU THR VAL TRP GLY ILE LYS GLN LEU SEQRES 6 B 153 GLN ALA ARG VAL LEU ALA VAL GLU ARG TYR LEU ARG ASP SEQRES 7 B 153 GLN GLN LEU LEU GLY ILE TRP GLY CYS SER GLY LYS ILE SEQRES 8 B 153 ILE CYS CYS THR ASN VAL PRO TRP ASN ASP SER TRP SER SEQRES 9 B 153 ASN LYS THR ILE ASN GLU ILE TRP ASP ASN MET THR TRP SEQRES 10 B 153 MET GLN TRP GLU LYS GLU ILE ASP ASN TYR THR GLN HIS SEQRES 11 B 153 ILE TYR THR LEU LEU GLU VAL SER GLN ILE GLN GLN GLU SEQRES 12 B 153 LYS ASN GLU GLN GLU LEU LEU GLU LEU ASP SEQRES 1 D 243 GLU GLY GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 D 243 PRO GLY ALA SER VAL LYS ILE SER CYS LYS THR SER GLY SEQRES 3 D 243 TYR ARG PHE ASN PHE TYR HIS ILE ASN TRP ILE ARG GLN SEQRES 4 D 243 THR ALA GLY ARG GLY PRO GLU TRP MET GLY TRP ILE SER SEQRES 5 D 243 PRO TYR SER GLY ASP LYS ASN LEU ALA PRO ALA PHE GLN SEQRES 6 D 243 ASP ARG VAL ILE MET THR THR ASP THR GLU VAL PRO VAL SEQRES 7 D 243 THR SER PHE THR SER THR GLY ALA ALA TYR MET GLU ILE SEQRES 8 D 243 ARG ASN LEU LYS PHE ASP ASP THR GLY THR TYR PHE CYS SEQRES 9 D 243 ALA LYS GLY LEU LEU ARG ASP GLY SER SER THR TRP LEU SEQRES 10 D 243 PRO TYR LEU TRP GLY GLN GLY THR LEU LEU THR VAL SER SEQRES 11 D 243 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 D 243 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 D 243 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 D 243 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 D 243 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 D 243 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 D 243 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 D 243 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 D 243 ASP LYS GLY LEU GLU VAL LEU PHE GLN SEQRES 1 E 216 GLN SER VAL LEU THR GLN SER ALA SER VAL SER GLY SER SEQRES 2 E 216 LEU GLY GLN SER VAL THR ILE SER CYS THR GLY PRO ASN SEQRES 3 E 216 SER VAL CYS CYS SER HIS LYS SER ILE SER TRP TYR GLN SEQRES 4 E 216 TRP PRO PRO GLY ARG ALA PRO THR LEU ILE ILE TYR GLU SEQRES 5 E 216 ASP ASN GLU ARG ALA PRO GLY ILE SER PRO ARG PHE SER SEQRES 6 E 216 GLY TYR LYS SER TYR TRP SER ALA TYR LEU THR ILE SER SEQRES 7 E 216 ASP LEU ARG PRO GLU ASP GLU THR THR TYR TYR CYS CYS SEQRES 8 E 216 SER TYR THR HIS ASN SER GLY CYS VAL PHE GLY THR GLY SEQRES 9 E 216 THR LYS VAL SER VAL LEU GLY GLN SER LYS ALA ASN PRO SEQRES 10 E 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 E 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 E 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 E 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 E 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 E 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 E 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 E 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 G 482 ALA LYS LYS TRP VAL THR VAL TYR TYR GLY VAL PRO VAL SEQRES 2 G 482 TRP LYS GLU ALA THR THR THR LEU PHE CYS ALA SER ASP SEQRES 3 G 482 ALA LYS ALA TYR ASP THR GLU VAL HIS ASN VAL TRP ALA SEQRES 4 G 482 THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN GLU SEQRES 5 G 482 ILE VAL LEU GLY ASN VAL THR GLU ASN PHE ASN MET TRP SEQRES 6 G 482 LYS ASN ASN MET VAL GLU GLN MET HIS GLU ASP ILE ILE SEQRES 7 G 482 SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS LEU SEQRES 8 G 482 THR PRO LEU CYS VAL THR LEU ASN CYS ASN ASN VAL ASN SEQRES 9 G 482 THR ASN ASN THR ASN ASN SER THR ASN ALA THR ILE SER SEQRES 10 G 482 ASP TRP GLU LYS MET GLU THR GLY GLU MET LYS ASN CYS SEQRES 11 G 482 SER PHE ASN VAL THR THR SER ILE ARG ASP LYS ILE LYS SEQRES 12 G 482 LYS GLU TYR ALA LEU PHE TYR LYS LEU ASP VAL VAL PRO SEQRES 13 G 482 LEU GLU ASN LYS ASN ASN ILE ASN ASN THR ASN ILE THR SEQRES 14 G 482 ASN TYR ARG LEU ILE ASN CYS ASN THR SER VAL ILE THR SEQRES 15 G 482 GLN ALA CYS PRO LYS VAL SER PHE GLU PRO ILE PRO ILE SEQRES 16 G 482 HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE LEU LYS CYS SEQRES 17 G 482 ASN SER LYS THR PHE ASN GLY SER GLY PRO CYS THR ASN SEQRES 18 G 482 VAL SER THR VAL GLN CYS THR HIS GLY ILE ARG PRO VAL SEQRES 19 G 482 VAL SER THR GLN LEU LEU LEU ASN GLY SER LEU ALA GLU SEQRES 20 G 482 GLU GLU ILE VAL ILE ARG SER GLU ASN ILE THR ASP ASN SEQRES 21 G 482 ALA LYS THR ILE ILE VAL GLN LEU ASN GLU ALA VAL GLU SEQRES 22 G 482 ILE ASN CYS THR ARG PRO ASN ASN ASN THR ARG LYS SER SEQRES 23 G 482 ILE HIS ILE GLY PRO GLY ARG ALA PHE TYR ALA THR GLY SEQRES 24 G 482 ASP ILE ILE GLY ASN ILE ARG GLN ALA HIS CYS ASN ILE SEQRES 25 G 482 SER LYS ALA ARG TRP ASN GLU THR LEU GLY GLN ILE VAL SEQRES 26 G 482 ALA LYS LEU GLU GLU GLN PHE PRO ASN LYS THR ILE ILE SEQRES 27 G 482 PHE ASN HIS SER SER GLY GLY ASP PRO GLU ILE VAL THR SEQRES 28 G 482 HIS SER PHE ASN CYS GLY GLY GLU PHE PHE TYR CYS ASN SEQRES 29 G 482 THR THR PRO LEU PHE ASN SER THR TRP ASN ASN THR ARG SEQRES 30 G 482 THR ASP ASP TYR PRO THR GLY GLY GLU GLN ASN ILE THR SEQRES 31 G 482 LEU GLN CYS ARG ILE LYS GLN ILE ILE ASN MET TRP GLN SEQRES 32 G 482 GLY VAL GLY LYS ALA MET TYR ALA PRO PRO ILE ARG GLY SEQRES 33 G 482 GLN ILE ARG CYS SER SER ASN ILE THR GLY LEU LEU LEU SEQRES 34 G 482 THR ARG ASP GLY GLY ARG ASP GLN ASN GLY THR GLU THR SEQRES 35 G 482 PHE ARG PRO GLY GLY GLY ASN MET ARG ASP ASN TRP ARG SEQRES 36 G 482 SER GLU LEU TYR LYS TYR LYS VAL VAL LYS ILE GLU PRO SEQRES 37 G 482 LEU GLY ILE ALA PRO THR ALA CYS LYS ARG ARG VAL VAL SEQRES 38 G 482 GLN SEQRES 1 H 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL ARG SEQRES 2 H 236 PRO SER GLU THR LEU SER VAL THR CYS ILE VAL SER GLY SEQRES 3 H 236 GLY SER ILE SER ASN TYR TYR TRP THR TRP ILE ARG GLN SEQRES 4 H 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SER SEQRES 5 H 236 ASP ARG GLU THR THR THR TYR ASN PRO SER LEU ASN SER SEQRES 6 H 236 ARG ALA VAL ILE SER ARG ASP THR SER LYS ASN GLN LEU SEQRES 7 H 236 SER LEU GLN LEU ARG SER VAL THR THR ALA ASP THR ALA SEQRES 8 H 236 ILE TYR PHE CYS ALA THR ALA ARG ARG GLY GLN ARG ILE SEQRES 9 H 236 TYR GLY VAL VAL SER PHE GLY GLU PHE PHE TYR TYR TYR SEQRES 10 H 236 TYR MET ASP VAL TRP GLY LYS GLY THR ALA VAL THR VAL SEQRES 11 H 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 236 CYS ASP SEQRES 1 L 214 SER TYR VAL SER PRO LEU SER VAL ALA LEU GLY GLU THR SEQRES 2 L 214 ALA ARG ILE SER CYS GLY ARG GLN ALA LEU GLY SER ARG SEQRES 3 L 214 ALA VAL GLN TRP TYR GLN HIS LYS PRO GLY GLN ALA PRO SEQRES 4 L 214 ILE LEU LEU ILE TYR ASN ASN GLN ASP ARG PRO SER GLY SEQRES 5 L 214 ILE PRO GLU ARG PHE SER GLY THR PRO ASP ILE ASN PHE SEQRES 6 L 214 GLY THR THR ALA THR LEU THR ILE SER GLY VAL GLU VAL SEQRES 7 L 214 GLY ASP GLU ALA ASP TYR TYR CYS HIS MET TRP ASP SER SEQRES 8 L 214 ARG SER GLY PHE SER TRP SER PHE GLY GLY ALA THR ARG SEQRES 9 L 214 LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SER CYS SEQRES 16 L 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 214 ALA PRO THR GLU CYS SER HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET MAN A 6 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET MAN F 6 11 HET MAN F 7 11 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET BMA J 3 11 HET MAN J 4 11 HET NAG K 1 14 HET NAG K 2 14 HET BMA K 3 11 HET NAG M 1 14 HET NAG M 2 14 HET BMA M 3 11 HET MAN M 4 11 HET NAG N 1 14 HET NAG N 2 14 HET BMA N 3 11 HET NAG O 1 14 HET NAG O 2 14 HET BMA O 3 11 HET NAG P 1 14 HET NAG P 2 14 HET BMA P 3 11 HET MAN P 4 11 HET MAN P 5 11 HET MAN P 6 11 HET MAN P 7 11 HET MAN P 8 11 HET NAG Q 1 14 HET NAG Q 2 14 HET NAG R 1 14 HET NAG R 2 14 HET BMA R 3 11 HET MAN R 4 11 HET NAG S 1 14 HET NAG S 2 14 HET BMA S 3 11 HET MAN S 4 11 HET MAN S 5 11 HET NAG T 1 14 HET NAG T 2 14 HET BMA T 3 11 HET NAG U 1 14 HET NAG U 2 14 HET BMA U 3 11 HET NAG B 701 14 HET NAG B 702 14 HET NAG G 601 14 HET NAG G 602 14 HET NAG G 603 14 HET NAG G 604 14 HET NAG G 605 14 HET NAG G 606 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 7 NAG 38(C8 H15 N O6) FORMUL 7 BMA 12(C6 H12 O6) FORMUL 7 MAN 17(C6 H12 O6) HELIX 1 AA1 PHE B 518 LEU B 523 1 6 HELIX 2 AA2 VAL B 539 LEU B 544 1 6 HELIX 3 AA3 THR B 569 ILE B 595 1 27 HELIX 4 AA4 THR B 618 ASP B 624 1 7 HELIX 5 AA5 THR B 627 ASP B 636 1 10 HELIX 6 AA6 TYR B 638 SER B 649 1 12 HELIX 7 AA7 GLN B 650 GLU B 662 1 13 HELIX 8 AA8 LYS D 83 THR D 87 5 5 HELIX 9 AA9 SER D 156 ALA D 158 5 3 HELIX 10 AB1 ASP D 217 VAL D 222 1 6 HELIX 11 AB2 PRO E 26 CYS E 27C 5 5 HELIX 12 AB3 ARG E 79 GLU E 83 5 5 HELIX 13 AB4 SER E 121 ALA E 127 1 7 HELIX 14 AB5 THR E 181 SER E 187 1 7 HELIX 15 AB6 ASN G 99 LYS G 117 1 19 HELIX 16 AB7 LEU G 122 CYS G 126 5 5 HELIX 17 AB8 TYR G 177 LEU G 179 5 3 HELIX 18 AB9 LYS G 335 PHE G 353 1 19 HELIX 19 AC1 ASN G 425 GLY G 429 5 5 HELIX 20 AC2 ARG G 476 SER G 481 1 6 HELIX 21 AC3 SER H 154 ALA H 156 5 3 HELIX 22 AC4 SER H 185 LEU H 187 5 3 HELIX 23 AC5 GLU L 79 GLU L 83 5 5 HELIX 24 AC6 SER L 122 ALA L 128 1 7 HELIX 25 AC7 THR L 182 HIS L 189 1 8 SHEET 1 AA1 3 ILE B 603 PRO B 609 0 SHEET 2 AA1 3 TRP G 35 TYR G 40 -1 O VAL G 36 N VAL B 608 SHEET 3 AA1 3 LEU G 494 THR G 499 -1 O THR G 499 N TRP G 35 SHEET 1 AA2 4 GLN D 3 GLN D 6 0 SHEET 2 AA2 4 SER D 17 SER D 25 -1 O LYS D 23 N VAL D 5 SHEET 3 AA2 4 SER D 74 ARG D 82A-1 O ALA D 78 N CYS D 22 SHEET 4 AA2 4 VAL D 67 THR D 71 -1 N THR D 70 O TYR D 79 SHEET 1 AA3 4 GLN D 3 GLN D 6 0 SHEET 2 AA3 4 SER D 17 SER D 25 -1 O LYS D 23 N VAL D 5 SHEET 3 AA3 4 SER D 74 ARG D 82A-1 O ALA D 78 N CYS D 22 SHEET 4 AA3 4 VAL D 72C PRO D 72D-1 N VAL D 72C O THR D 75 SHEET 1 AA4 6 GLU D 10 LYS D 12 0 SHEET 2 AA4 6 THR D 107 VAL D 111 1 O THR D 110 N LYS D 12 SHEET 3 AA4 6 GLY D 88 LYS D 94 -1 N GLY D 88 O LEU D 109 SHEET 4 AA4 6 ILE D 34 THR D 40 -1 N ILE D 37 O PHE D 91 SHEET 5 AA4 6 GLY D 44 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA4 6 LYS D 57 LEU D 59 -1 O ASN D 58 N TRP D 50 SHEET 1 AA5 4 GLU D 10 LYS D 12 0 SHEET 2 AA5 4 THR D 107 VAL D 111 1 O THR D 110 N LYS D 12 SHEET 3 AA5 4 GLY D 88 LYS D 94 -1 N GLY D 88 O LEU D 109 SHEET 4 AA5 4 LEU D 102 TRP D 103 -1 O LEU D 102 N LYS D 94 SHEET 1 AA6 4 SER D 120 SER D 130 0 SHEET 2 AA6 4 THR D 135 TYR D 145 -1 O GLY D 139 N LEU D 124 SHEET 3 AA6 4 TYR D 176 PRO D 185 -1 O VAL D 184 N ALA D 136 SHEET 4 AA6 4 VAL D 163 THR D 165 -1 N HIS D 164 O VAL D 181 SHEET 1 AA7 4 SER D 120 SER D 130 0 SHEET 2 AA7 4 THR D 135 TYR D 145 -1 O GLY D 139 N LEU D 124 SHEET 3 AA7 4 TYR D 176 PRO D 185 -1 O VAL D 184 N ALA D 136 SHEET 4 AA7 4 VAL D 169 LEU D 170 -1 N VAL D 169 O SER D 177 SHEET 1 AA8 3 THR D 151 TRP D 154 0 SHEET 2 AA8 3 ILE D 195 HIS D 200 -1 O ASN D 197 N SER D 153 SHEET 3 AA8 3 THR D 205 ARG D 210 -1 O VAL D 207 N VAL D 198 SHEET 1 AA9 4 THR E 5 GLN E 6 0 SHEET 2 AA9 4 SER E 18 THR E 24 -1 O THR E 24 N THR E 5 SHEET 3 AA9 4 ALA E 71 SER E 76 -1 O LEU E 73 N ILE E 21 SHEET 4 AA9 4 PHE E 62 LYS E 66 -1 N TYR E 65 O TYR E 72 SHEET 1 AB1 5 SER E 9 SER E 14 0 SHEET 2 AB1 5 THR E 102 LEU E 106A 1 O LEU E 106A N GLY E 13 SHEET 3 AB1 5 THR E 85 TYR E 91 -1 N TYR E 86 O THR E 102 SHEET 4 AB1 5 SER E 32 GLN E 37 -1 N TYR E 36 O TYR E 87 SHEET 5 AB1 5 THR E 45 ILE E 48 -1 O THR E 45 N GLN E 37 SHEET 1 AB2 4 SER E 114 PHE E 118 0 SHEET 2 AB2 4 ALA E 130 SER E 137 -1 O LEU E 135 N THR E 116 SHEET 3 AB2 4 TYR E 172 LEU E 180 -1 O LEU E 180 N ALA E 130 SHEET 4 AB2 4 VAL E 159 THR E 161 -1 N GLU E 160 O TYR E 177 SHEET 1 AB3 4 SER E 114 PHE E 118 0 SHEET 2 AB3 4 ALA E 130 SER E 137 -1 O LEU E 135 N THR E 116 SHEET 3 AB3 4 TYR E 172 LEU E 180 -1 O LEU E 180 N ALA E 130 SHEET 4 AB3 4 SER E 165 LYS E 166 -1 N SER E 165 O ALA E 173 SHEET 1 AB4 3 THR E 145 ALA E 150 0 SHEET 2 AB4 3 TYR E 191 THR E 196 -1 O SER E 192 N LYS E 149 SHEET 3 AB4 3 THR E 201 VAL E 206 -1 O LYS E 204 N CYS E 193 SHEET 1 AB5 5 TRP G 45 GLU G 47 0 SHEET 2 AB5 5 TYR G 486 ILE G 491 -1 O LYS G 490 N LYS G 46 SHEET 3 AB5 5 PHE G 223 CYS G 228 -1 N ALA G 224 O VAL G 489 SHEET 4 AB5 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 AB5 5 GLU G 83 LEU G 86 -1 N ILE G 84 O THR G 244 SHEET 1 AB6 2 ALA G 55 SER G 56 0 SHEET 2 AB6 2 VAL G 75 PRO G 76 1 O VAL G 75 N SER G 56 SHEET 1 AB7 2 GLU G 91 ASN G 92 0 SHEET 2 AB7 2 PRO G 238 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AB8 3 ASN G 130 ASN G 132 0 SHEET 2 AB8 3 ASN G 156 THR G 162 -1 O ASN G 156 N ASN G 132 SHEET 3 AB8 3 ILE G 169 ALA G 174 -1 O GLU G 172 N PHE G 159 SHEET 1 AB9 2 VAL G 181 PRO G 183 0 SHEET 2 AB9 2 TYR G 191 LEU G 193 -1 O ARG G 192 N VAL G 182 SHEET 1 AC1 3 ILE G 201 GLN G 203 0 SHEET 2 AC1 3 ALA G 433 TYR G 435 1 O ALA G 433 N THR G 202 SHEET 3 AC1 3 ILE G 423 ILE G 424 -1 N ILE G 424 O MET G 434 SHEET 1 AC2 4 LEU G 259 LEU G 261 0 SHEET 2 AC2 4 GLY G 441 LEU G 454 -1 O GLY G 451 N LEU G 260 SHEET 3 AC2 4 ILE G 284 GLN G 287 -1 N ILE G 284 O LEU G 454 SHEET 4 AC2 4 VAL G 271 SER G 274 -1 N ARG G 273 O ILE G 285 SHEET 1 AC3 7 LEU G 259 LEU G 261 0 SHEET 2 AC3 7 GLY G 441 LEU G 454 -1 O GLY G 451 N LEU G 260 SHEET 3 AC3 7 VAL G 292 ASN G 302 -1 N ILE G 294 O SER G 447 SHEET 4 AC3 7 ALA G 329 SER G 334 -1 O ASN G 332 N ASN G 295 SHEET 5 AC3 7 ASN G 413 LYS G 421 -1 O ILE G 414 N ILE G 333 SHEET 6 AC3 7 GLU G 381 CYS G 385 -1 N TYR G 384 O ARG G 419 SHEET 7 AC3 7 HIS G 374 CYS G 378 -1 N CYS G 378 O GLU G 381 SHEET 1 AC4 2 ARG G 304 HIS G 308 0 SHEET 2 AC4 2 ALA G 316 THR G 320 -1 O ALA G 319 N LYS G 305 SHEET 1 AC5 4 LEU H 4 SER H 7 0 SHEET 2 AC5 4 LEU H 18 VAL H 24 -1 O THR H 21 N SER H 7 SHEET 3 AC5 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AC5 4 ALA H 67 ASP H 72 -1 N SER H 70 O SER H 79 SHEET 1 AC6 6 LEU H 11 VAL H 12 0 SHEET 2 AC6 6 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AC6 6 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AC6 6 TYR H 33 GLN H 39 -1 N GLN H 39 O ILE H 89 SHEET 5 AC6 6 LEU H 45 ILE H 51 -1 O ILE H 51 N TRP H 34 SHEET 6 AC6 6 THR H 57 TYR H 59 -1 O THR H 58 N TYR H 50 SHEET 1 AC7 4 LEU H 11 VAL H 12 0 SHEET 2 AC7 4 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AC7 4 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AC7 4 PHE H 100J TRP H 101 -1 O TYR H 100M N GLY H 98 SHEET 1 AC8 4 VAL H 119 LEU H 122 0 SHEET 2 AC8 4 THR H 133 VAL H 140 -1 O LEU H 139 N PHE H 120 SHEET 3 AC8 4 SER H 177 PRO H 183 -1 O VAL H 180 N LEU H 136 SHEET 4 AC8 4 VAL H 161 THR H 163 -1 N HIS H 162 O VAL H 179 SHEET 1 AC9 3 THR H 149 TRP H 152 0 SHEET 2 AC9 3 ILE H 193 ASN H 197 -1 O ASN H 195 N SER H 151 SHEET 3 AC9 3 LYS H 204 LYS H 208 -1 O VAL H 205 N VAL H 196 SHEET 1 AD1 5 SER L 9 ALA L 14 0 SHEET 2 AD1 5 THR L 102 LEU L 107 1 O ARG L 103 N SER L 9 SHEET 3 AD1 5 ASP L 85 HIS L 89 -1 N TYR L 86 O THR L 102 SHEET 4 AD1 5 GLN L 34 HIS L 38 -1 N GLN L 34 O HIS L 89 SHEET 5 AD1 5 ILE L 45 ILE L 48 -1 O ILE L 45 N GLN L 37 SHEET 1 AD2 3 ALA L 19 ILE L 21 0 SHEET 2 AD2 3 LEU L 73 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 AD2 3 SER L 63 GLY L 64 -1 N SER L 63 O THR L 74 SHEET 1 AD3 4 SER L 115 PHE L 119 0 SHEET 2 AD3 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AD3 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AD3 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AD4 4 SER L 115 PHE L 119 0 SHEET 2 AD4 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AD4 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AD4 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AD5 4 SER L 154 PRO L 155 0 SHEET 2 AD5 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AD5 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AD5 4 SER L 201 VAL L 207 -1 O LYS L 205 N CYS L 194 SSBOND 1 CYS B 598 CYS B 604 1555 1555 2.03 SSBOND 2 CYS B 605 CYS G 501 1555 1555 2.04 SSBOND 3 CYS D 22 CYS D 92 1555 1555 2.03 SSBOND 4 CYS D 140 CYS D 196 1555 1555 2.03 SSBOND 5 CYS E 23 CYS E 88 1555 1555 2.04 SSBOND 6 CYS E 134 CYS E 193 1555 1555 2.03 SSBOND 7 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 8 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 9 CYS G 126 CYS G 196 1555 1555 2.03 SSBOND 10 CYS G 131 CYS G 157 1555 1555 2.03 SSBOND 11 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 12 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 13 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 14 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 15 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 16 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 17 CYS H 138 CYS H 194 1555 1555 2.03 SSBOND 18 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 19 CYS L 135 CYS L 194 1555 1555 2.04 LINK ND2 ASN B 611 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 616 C1 NAG B 701 1555 1555 1.44 LINK ND2 ASN B 625 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN B 637 C1 NAG B 702 1555 1555 1.44 LINK ND2 ASN G 88 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN G 156 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN G 160 C1 NAG G 601 1555 1555 1.44 LINK ND2 ASN G 197 C1 NAG G 602 1555 1555 1.39 LINK ND2 ASN G 234 C1 NAG J 1 1555 1555 1.43 LINK ND2 ASN G 241 C1 NAG K 1 1555 1555 1.47 LINK ND2 ASN G 262 C1 NAG M 1 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 603 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG N 1 1555 1555 1.45 LINK ND2 ASN G 301 C1 NAG O 1 1555 1555 1.44 LINK ND2 ASN G 332 C1 NAG P 1 1555 1555 1.44 LINK ND2 ASN G 339 C1 NAG G 604 1555 1555 1.44 LINK ND2 ASN G 362 C1 NAG Q 1 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG R 1 1555 1555 1.44 LINK ND2 ASN G 392 C1 NAG S 1 1555 1555 1.44 LINK ND2 ASN G 396 C1 NAG G 605 1555 1555 1.44 LINK ND2 ASN G 413 C1 NAG T 1 1555 1555 1.45 LINK ND2 ASN G 448 C1 NAG U 1 1555 1555 1.44 LINK ND2 ASN G 463 C1 NAG G 606 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.47 LINK O3 BMA A 3 C1 MAN A 4 1555 1555 1.44 LINK O6 BMA A 3 C1 MAN A 6 1555 1555 1.45 LINK O2 MAN A 4 C1 MAN A 5 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O3 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 4 1555 1555 1.45 LINK O3 BMA F 3 C1 MAN F 7 1555 1555 1.45 LINK O2 MAN F 4 C1 MAN F 5 1555 1555 1.46 LINK O6 MAN F 4 C1 MAN F 6 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 LINK O4 NAG J 2 C1 BMA J 3 1555 1555 1.44 LINK O6 BMA J 3 C1 MAN J 4 1555 1555 1.45 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.44 LINK O4 NAG K 2 C1 BMA K 3 1555 1555 1.44 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.45 LINK O4 NAG M 2 C1 BMA M 3 1555 1555 1.44 LINK O6 BMA M 3 C1 MAN M 4 1555 1555 1.45 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.44 LINK O4 NAG N 2 C1 BMA N 3 1555 1555 1.45 LINK O4 NAG O 1 C1 NAG O 2 1555 1555 1.44 LINK O4 NAG O 2 C1 BMA O 3 1555 1555 1.45 LINK O4 NAG P 1 C1 NAG P 2 1555 1555 1.44 LINK O4 NAG P 2 C1 BMA P 3 1555 1555 1.41 LINK O3 BMA P 3 C1 MAN P 4 1555 1555 1.44 LINK O6 BMA P 3 C1 MAN P 6 1555 1555 1.44 LINK O2 MAN P 4 C1 MAN P 5 1555 1555 1.44 LINK O3 MAN P 6 C1 MAN P 7 1555 1555 1.45 LINK O6 MAN P 6 C1 MAN P 8 1555 1555 1.44 LINK O4 NAG Q 1 C1 NAG Q 2 1555 1555 1.45 LINK O4 NAG R 1 C1 NAG R 2 1555 1555 1.46 LINK O4 NAG R 2 C1 BMA R 3 1555 1555 1.44 LINK O3 BMA R 3 C1 MAN R 4 1555 1555 1.45 LINK O4 NAG S 1 C1 NAG S 2 1555 1555 1.45 LINK O4 NAG S 2 C1 BMA S 3 1555 1555 1.44 LINK O3 BMA S 3 C1 MAN S 4 1555 1555 1.44 LINK O6 BMA S 3 C1 MAN S 5 1555 1555 1.44 LINK O4 NAG T 1 C1 NAG T 2 1555 1555 1.45 LINK O3 NAG T 2 C1 BMA T 3 1555 1555 1.44 LINK O4 NAG U 1 C1 NAG U 2 1555 1555 1.44 LINK O4 NAG U 2 C1 BMA U 3 1555 1555 1.45 CRYST1 212.326 212.326 212.326 90.00 90.00 90.00 P 2 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004710 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004710 0.00000