HEADER DNA BINDING PROTEIN 05-SEP-18 6MDW TITLE MECHANISM OF PROTEASE DEPENDENT DPC REPAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPRT-LIKE DOMAIN-CONTAINING PROTEIN SPARTAN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA DAMAGE PROTEIN TARGETING VCP,DVC1,PROTEIN WITH SPRT-LIKE COMPND 5 DOMAIN AT THE N TERMINUS,SPARTAN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPRTN, C1ORF124, DVC1, UNQ1880/PRO4323; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DPC REPAIR PROTEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.LI,J.RACZYNSKA,Z.CHEN,H.YU REVDAT 3 11-OCT-23 6MDW 1 REMARK REVDAT 2 11-DEC-19 6MDW 1 REMARK REVDAT 1 10-APR-19 6MDW 0 JRNL AUTH F.LI,J.E.RACZYNSKA,Z.CHEN,H.YU JRNL TITL STRUCTURAL INSIGHT INTO DNA-DEPENDENT ACTIVATION OF HUMAN JRNL TITL 2 METALLOPROTEASE SPARTAN. JRNL REF CELL REP V. 26 3336 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 30893605 JRNL DOI 10.1016/J.CELREP.2019.02.082 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 29065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1865 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2531 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2093 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3441 ; 1.401 ; 1.674 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4924 ; 0.971 ; 1.664 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ;22.644 ; 5.503 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;27.710 ;20.395 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;13.823 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3118 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 514 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 3.073 ; 1.329 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1129 ; 3.073 ; 1.329 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1408 ; 4.170 ; 1.983 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1409 ; 4.169 ; 1.983 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 4.505 ; 1.653 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1401 ; 4.501 ; 1.653 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2028 ; 6.105 ; 2.335 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2107 ; 8.239 ;13.994 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2056 ; 8.179 ;13.281 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6MDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6MDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE AT PH 5.5, 14% (W/V) PEG8000, AND 10 MM ATP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.21100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.77650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.21100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 14.77650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 PA ADP A 802 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 988 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1116 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1130 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 PRO A 25 REMARK 465 GLN A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 84 REMARK 465 GLY A 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 984 O HOH A 1087 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 212 O - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -169.20 -128.69 REMARK 500 MET A 72 95.10 -65.39 REMARK 500 THR A 73 -15.53 -145.28 REMARK 500 CYS A 205 -59.68 -145.40 REMARK 500 CYS A 205 -58.91 -126.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 212 -29.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1132 DISTANCE = 5.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 805 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 115 NE2 93.8 REMARK 620 3 HIS A 130 NE2 96.1 96.4 REMARK 620 4 FLC A 801 OA2 90.1 87.9 172.1 REMARK 620 5 FLC A 801 OB2 92.8 168.6 92.1 82.8 REMARK 620 6 FLC A 801 OHB 170.6 91.8 90.7 82.5 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 169 SG REMARK 620 2 CYS A 173 SG 113.2 REMARK 620 3 HIS A 201 NE2 103.0 111.6 REMARK 620 4 CYS A 205 SG 110.4 113.1 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 169 SG REMARK 620 2 CYS A 173 SG 111.5 REMARK 620 3 HIS A 201 NE2 106.4 112.6 REMARK 620 4 CYS A 205 SG 111.9 112.9 101.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 805 DBREF 6MDW A 26 214 UNP Q9H040 SPRTN_HUMAN 26 214 SEQADV 6MDW GLY A 21 UNP Q9H040 EXPRESSION TAG SEQADV 6MDW PRO A 22 UNP Q9H040 EXPRESSION TAG SEQADV 6MDW GLY A 23 UNP Q9H040 EXPRESSION TAG SEQADV 6MDW ARG A 24 UNP Q9H040 EXPRESSION TAG SEQADV 6MDW PRO A 25 UNP Q9H040 EXPRESSION TAG SEQRES 1 A 194 GLY PRO GLY ARG PRO GLN GLU SER LEU SER LEU VAL ASP SEQRES 2 A 194 ALA SER TRP GLU LEU VAL ASP PRO THR PRO ASP LEU GLN SEQRES 3 A 194 ALA LEU PHE VAL GLN PHE ASN ASP GLN PHE PHE TRP GLY SEQRES 4 A 194 GLN LEU GLU ALA VAL GLU VAL LYS TRP SER VAL ARG MET SEQRES 5 A 194 THR LEU CYS ALA GLY ILE CYS SER TYR GLU GLY LYS GLY SEQRES 6 A 194 GLY MET CYS SER ILE ARG LEU SER GLU PRO LEU LEU LYS SEQRES 7 A 194 LEU ARG PRO ARG LYS ASP LEU VAL GLU THR LEU LEU HIS SEQRES 8 A 194 GLU MET ILE HIS ALA TYR LEU PHE VAL THR ASN ASN ASP SEQRES 9 A 194 LYS ASP ARG GLU GLY HIS GLY PRO GLU PHE CYS LYS HIS SEQRES 10 A 194 MET HIS ARG ILE ASN SER LEU THR GLY ALA ASN ILE THR SEQRES 11 A 194 VAL TYR HIS THR PHE HIS ASP GLU VAL ASP GLU TYR ARG SEQRES 12 A 194 ARG HIS TRP TRP ARG CYS ASN GLY PRO CYS GLN HIS ARG SEQRES 13 A 194 PRO PRO TYR TYR GLY TYR VAL MLZ ARG ALA THR ASN ARG SEQRES 14 A 194 GLU PRO SER ALA HIS ASP TYR TRP TRP ALA GLU HIS GLN SEQRES 15 A 194 LYS THR CYS GLY GLY THR TYR ILE LYS ILE LYS GLU MODRES 6MDW MLZ A 184 LYS MODIFIED RESIDUE HET MLZ A 184 20 HET FLC A 801 13 HET ADP A 802 27 HET EDO A 803 4 HET ZN A 804 2 HET ZN A 805 1 HETNAM MLZ N-METHYL-LYSINE HETNAM FLC CITRATE ANION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 2 FLC C6 H5 O7 3- FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 EDO C2 H6 O2 FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *232(H2 O) HELIX 1 AA1 ASP A 44 PHE A 57 1 14 HELIX 2 AA2 GLU A 94 LYS A 98 1 5 HELIX 3 AA3 PRO A 101 THR A 121 1 21 HELIX 4 AA4 GLY A 131 GLY A 146 1 16 HELIX 5 AA5 GLY A 171 ARG A 176 5 6 HELIX 6 AA6 TRP A 197 CYS A 205 1 9 SHEET 1 AA1 3 GLU A 65 SER A 69 0 SHEET 2 AA1 3 CYS A 88 SER A 93 1 O LEU A 92 N SER A 69 SHEET 3 AA1 3 GLY A 77 TYR A 81 -1 N SER A 80 O SER A 89 SHEET 1 AA2 3 TYR A 182 ARG A 185 0 SHEET 2 AA2 3 HIS A 165 CYS A 169 -1 N HIS A 165 O ARG A 185 SHEET 3 AA2 3 TYR A 209 LYS A 211 -1 O ILE A 210 N ARG A 168 LINK SG ACYS A 75 CM AMLZ A 184 1555 1555 1.80 LINK SG BCYS A 75 CM BMLZ A 184 1555 1555 1.79 LINK C AVAL A 183 N AMLZ A 184 1555 1555 1.33 LINK C BVAL A 183 N BMLZ A 184 1555 1555 1.34 LINK C AMLZ A 184 N AARG A 185 1555 1555 1.34 LINK C BMLZ A 184 N BARG A 185 1555 1555 1.34 LINK NE2 HIS A 111 ZN ZN A 805 1555 1555 2.03 LINK NE2 HIS A 115 ZN ZN A 805 1555 1555 2.10 LINK NE2 HIS A 130 ZN ZN A 805 1555 1555 2.08 LINK SG ACYS A 169 ZN A ZN A 804 1555 1555 2.33 LINK SG BCYS A 169 ZN B ZN A 804 1555 1555 2.30 LINK SG ACYS A 173 ZN A ZN A 804 1555 1555 2.23 LINK SG BCYS A 173 ZN B ZN A 804 1555 1555 2.22 LINK NE2AHIS A 201 ZN A ZN A 804 1555 1555 2.08 LINK NE2BHIS A 201 ZN B ZN A 804 1555 1555 2.07 LINK SG ACYS A 205 ZN A ZN A 804 1555 1555 2.31 LINK SG BCYS A 205 ZN B ZN A 804 1555 1555 2.33 LINK OA2 FLC A 801 ZN ZN A 805 1555 1555 2.11 LINK OB2 FLC A 801 ZN ZN A 805 1555 1555 2.11 LINK OHB FLC A 801 ZN ZN A 805 1555 1555 2.10 CISPEP 1 PRO A 177 PRO A 178 0 -2.07 CISPEP 2 PRO A 177 PRO A 178 0 -1.94 SITE 1 AC1 14 GLY A 77 ILE A 78 HIS A 111 GLU A 112 SITE 2 AC1 14 HIS A 115 HIS A 130 HIS A 153 TRP A 166 SITE 3 AC1 14 TYR A 182 ILE A 212 ZN A 805 HOH A 941 SITE 4 AC1 14 HOH A 955 HOH A1016 SITE 1 AC2 26 LEU A 74 ARG A 163 TYR A 179 TYR A 182 SITE 2 AC2 26 VAL A 183 MLZ A 184 ARG A 185 ARG A 189 SITE 3 AC2 26 TYR A 196 TRP A 197 TYR A 209 HOH A 906 SITE 4 AC2 26 HOH A 920 HOH A 924 HOH A 977 HOH A 995 SITE 5 AC2 26 HOH A1025 HOH A1026 HOH A1055 HOH A1060 SITE 6 AC2 26 HOH A1062 HOH A1067 HOH A1071 HOH A1084 SITE 7 AC2 26 HOH A1108 HOH A1113 SITE 1 AC3 8 TRP A 58 TYR A 117 HIS A 137 HIS A 139 SITE 2 AC3 8 HOH A 911 HOH A 999 HOH A1009 HOH A1095 SITE 1 AC4 5 CYS A 169 GLY A 171 CYS A 173 HIS A 201 SITE 2 AC4 5 CYS A 205 SITE 1 AC5 4 HIS A 111 HIS A 115 HIS A 130 FLC A 801 CRYST1 128.422 29.553 50.242 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.033838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019904 0.00000