HEADER CELL CYCLE, TRANSFERASE 09-SEP-18 6MF5 TITLE CRYSTAL STRUCTURE OF BUDDING YEAST CDC5 POLO-BOX DOMAIN IN COMPLEX TITLE 2 WITH SPC72 PHOSPHOPEPTIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL CYCLE SERINE/THREONINE-PROTEIN KINASE CDC5/MSD2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.11.21; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SPC72; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: CDC5, MSD2, PKX2, YMR001C, YM8270.03C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS MITOSIS, DBF4, POLO-LIKE KINASES, CELL CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GUARNE,A.W.ALMAWI REVDAT 3 11-OCT-23 6MF5 1 REMARK REVDAT 2 02-SEP-20 6MF5 1 JRNL REVDAT 1 19-FEB-20 6MF5 0 JRNL AUTH A.W.ALMAWI,L.LANGLOIS-LEMAY,S.BOULTON,J.RODRIGUEZ GONZALEZ, JRNL AUTH 2 G.MELACINI,D.D'AMOURS,A.GUARNE JRNL TITL DISTINCT SURFACES ON CDC5/PLK POLO-BOX DOMAIN ORCHESTRATE JRNL TITL 2 COMBINATORIAL SUBSTRATE RECOGNITION DURING CELL DIVISION. JRNL REF SCI REP V. 10 3379 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 32099015 JRNL DOI 10.1038/S41598-020-60344-4 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0834 - 6.1757 1.00 1243 142 0.2266 0.2459 REMARK 3 2 6.1757 - 4.9042 1.00 1239 136 0.2279 0.2302 REMARK 3 3 4.9042 - 4.2850 1.00 1194 136 0.1795 0.1972 REMARK 3 4 4.2850 - 3.8935 1.00 1221 144 0.1953 0.2385 REMARK 3 5 3.8935 - 3.6146 1.00 1201 138 0.2244 0.2510 REMARK 3 6 3.6146 - 3.4016 1.00 1214 119 0.2324 0.2724 REMARK 3 7 3.4016 - 3.2313 1.00 1189 137 0.2559 0.2964 REMARK 3 8 3.2313 - 3.0907 1.00 1230 134 0.2753 0.3038 REMARK 3 9 3.0907 - 2.9718 1.00 1182 139 0.2797 0.3575 REMARK 3 10 2.9718 - 2.8692 1.00 1196 136 0.2803 0.3341 REMARK 3 11 2.8692 - 2.7795 0.99 1227 131 0.2881 0.3581 REMARK 3 12 2.7795 - 2.7001 0.99 1184 130 0.3007 0.3386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3930 REMARK 3 ANGLE : 0.800 5365 REMARK 3 CHIRALITY : 0.029 642 REMARK 3 PLANARITY : 0.004 676 REMARK 3 DIHEDRAL : 13.757 1283 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4721 10.0543 -24.4672 REMARK 3 T TENSOR REMARK 3 T11: 0.2716 T22: 0.3958 REMARK 3 T33: 0.3251 T12: 0.0252 REMARK 3 T13: -0.0244 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.3587 L22: 0.6013 REMARK 3 L33: -0.1931 L12: -0.1945 REMARK 3 L13: -0.3104 L23: 0.2118 REMARK 3 S TENSOR REMARK 3 S11: 0.2125 S12: 0.1994 S13: -0.4091 REMARK 3 S21: -0.3381 S22: -0.1878 S23: 0.3708 REMARK 3 S31: -0.0691 S32: -0.1778 S33: 0.0047 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 493 THROUGH 704 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9460 3.7863 -17.9049 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.2572 REMARK 3 T33: 0.1771 T12: -0.0104 REMARK 3 T13: -0.0210 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.7235 L22: 4.3536 REMARK 3 L33: 2.5670 L12: 0.3413 REMARK 3 L13: -0.4135 L23: 0.4071 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.1449 S13: 0.0520 REMARK 3 S21: 0.3157 S22: -0.0533 S23: -0.1030 REMARK 3 S31: -0.0403 S32: -0.1908 S33: -0.0091 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 434 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.1155 47.5060 -32.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.4795 T22: 0.3231 REMARK 3 T33: 0.5432 T12: -0.1065 REMARK 3 T13: -0.1000 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 2.4683 L22: 0.2118 REMARK 3 L33: 0.3310 L12: 0.6750 REMARK 3 L13: 1.1690 L23: 0.3346 REMARK 3 S TENSOR REMARK 3 S11: -0.4951 S12: 0.3855 S13: 1.5165 REMARK 3 S21: 0.3153 S22: -0.1879 S23: 0.1242 REMARK 3 S31: 0.4453 S32: 0.1634 S33: -0.4043 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 471 THROUGH 704 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3568 35.1898 -21.7661 REMARK 3 T TENSOR REMARK 3 T11: 0.4148 T22: 0.3053 REMARK 3 T33: 0.3865 T12: 0.0096 REMARK 3 T13: -0.0249 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.0617 L22: 2.8936 REMARK 3 L33: 2.0496 L12: 0.6267 REMARK 3 L13: -0.4234 L23: 0.1590 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0951 S13: 0.1433 REMARK 3 S21: -0.1730 S22: -0.0353 S23: -0.4268 REMARK 3 S31: -0.3026 S32: 0.1763 S33: -0.0035 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 228 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6917 17.5508 -15.4297 REMARK 3 T TENSOR REMARK 3 T11: 0.4454 T22: 0.5107 REMARK 3 T33: 0.6643 T12: 0.0079 REMARK 3 T13: 0.0542 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.0816 L22: 0.0680 REMARK 3 L33: 0.0505 L12: -0.0983 REMARK 3 L13: -0.0363 L23: 0.0442 REMARK 3 S TENSOR REMARK 3 S11: 0.1659 S12: -0.3814 S13: 0.5034 REMARK 3 S21: -0.2662 S22: 0.6853 S23: -0.7108 REMARK 3 S31: 0.0738 S32: -0.7441 S33: 0.0038 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 228 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7092 48.0006 -24.0516 REMARK 3 T TENSOR REMARK 3 T11: 0.7912 T22: 0.4546 REMARK 3 T33: 1.3544 T12: -0.0411 REMARK 3 T13: 0.1811 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 0.3117 L22: 0.2292 REMARK 3 L33: 0.2193 L12: 0.2132 REMARK 3 L13: -0.0071 L23: 0.1365 REMARK 3 S TENSOR REMARK 3 S11: -0.3271 S12: -0.0009 S13: 0.2299 REMARK 3 S21: 0.0661 S22: 0.0748 S23: -0.2664 REMARK 3 S31: -0.0770 S32: 0.0409 S33: -0.0454 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Q4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 6.50, 200 MM REMARK 280 MAGNESIUM CHLORIDE, 100 MM CESIUM CHLORIDE, 25 % PEG 3350., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.09500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 416 REMARK 465 ALA A 417 REMARK 465 LEU A 418 REMARK 465 SER A 419 REMARK 465 PRO A 420 REMARK 465 GLY A 421 REMARK 465 GLY A 422 REMARK 465 THR A 423 REMARK 465 LYS A 424 REMARK 465 GLN A 425 REMARK 465 LYS A 426 REMARK 465 TYR A 427 REMARK 465 LYS A 428 REMARK 465 GLU A 429 REMARK 465 VAL A 430 REMARK 465 VAL A 431 REMARK 465 ASP A 432 REMARK 465 ILE A 433 REMARK 465 GLU A 434 REMARK 465 MET A 497 REMARK 465 GLY A 498 REMARK 465 GLY A 499 REMARK 465 LEU A 500 REMARK 465 PRO A 501 REMARK 465 LYS A 502 REMARK 465 SER A 503 REMARK 465 ARG A 504 REMARK 465 LEU A 505 REMARK 465 PRO A 506 REMARK 465 LYS A 507 REMARK 465 ASP A 550 REMARK 465 ALA A 551 REMARK 465 PHE A 603 REMARK 465 GLY A 604 REMARK 465 ARG A 605 REMARK 465 GLU A 606 REMARK 465 GLU A 607 REMARK 465 TYR A 608 REMARK 465 HIS A 609 REMARK 465 ASP A 705 REMARK 465 GLY B 416 REMARK 465 ALA B 417 REMARK 465 LEU B 418 REMARK 465 SER B 419 REMARK 465 PRO B 420 REMARK 465 GLY B 421 REMARK 465 GLY B 422 REMARK 465 THR B 423 REMARK 465 LYS B 424 REMARK 465 GLN B 425 REMARK 465 LYS B 426 REMARK 465 TYR B 427 REMARK 465 LYS B 428 REMARK 465 GLU B 429 REMARK 465 VAL B 430 REMARK 465 VAL B 431 REMARK 465 ASP B 432 REMARK 465 ILE B 433 REMARK 465 GLY B 499 REMARK 465 LEU B 500 REMARK 465 PRO B 501 REMARK 465 GLY B 604 REMARK 465 ARG B 605 REMARK 465 GLU B 606 REMARK 465 GLU B 675 REMARK 465 GLU B 681 REMARK 465 SER B 682 REMARK 465 ASP B 705 REMARK 465 SER C 227 REMARK 465 GLY C 235 REMARK 465 SER C 236 REMARK 465 GLN C 237 REMARK 465 SER D 227 REMARK 465 GLY D 235 REMARK 465 SER D 236 REMARK 465 GLN D 237 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 436 CG CD OE1 NE2 REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 439 CG CD1 CD2 REMARK 470 LEU A 442 CG CD1 CD2 REMARK 470 ARG A 444 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 447 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 449 CD NE CZ NH1 NH2 REMARK 470 GLN A 452 CG CD OE1 NE2 REMARK 470 LYS A 458 CE NZ REMARK 470 GLU A 459 CG CD OE1 OE2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 GLU A 471 CG CD OE1 OE2 REMARK 470 HIS A 482 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 486 CG OD1 ND2 REMARK 470 GLU A 490 CG CD OE1 OE2 REMARK 470 GLN A 494 CG CD OE1 NE2 REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 ILE A 508 CG1 CG2 CD1 REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 LYS A 523 CD CE NZ REMARK 470 HIS A 524 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 560 CG OD1 OD2 REMARK 470 ASP A 561 CG OD1 OD2 REMARK 470 ARG A 562 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 563 CG CD OE1 OE2 REMARK 470 GLU A 574 CG CD OE1 OE2 REMARK 470 ARG A 577 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 ARG A 581 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 584 CG CD OE1 OE2 REMARK 470 ASP A 587 CG OD1 OD2 REMARK 470 LYS A 591 CG CD CE NZ REMARK 470 LYS A 594 CG CD CE NZ REMARK 470 VAL A 600 CG1 CG2 REMARK 470 SER A 601 OG REMARK 470 THR A 602 OG1 CG2 REMARK 470 LYS A 610 CG CD CE NZ REMARK 470 LYS A 622 CG CD CE NZ REMARK 470 LYS A 639 CE NZ REMARK 470 LYS A 651 CG CD CE NZ REMARK 470 ILE A 656 CG1 CG2 CD1 REMARK 470 HIS A 660 ND1 CD2 CE1 NE2 REMARK 470 GLU A 661 CG CD OE1 OE2 REMARK 470 VAL A 668 CG1 CG2 REMARK 470 GLU A 669 CG CD OE1 OE2 REMARK 470 VAL A 670 CG1 CG2 REMARK 470 LYS A 672 CG CD CE NZ REMARK 470 GLU A 675 CG CD OE1 OE2 REMARK 470 GLU A 681 CG CD OE1 OE2 REMARK 470 SER A 682 OG REMARK 470 ARG A 685 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 VAL A 704 CG1 CG2 REMARK 470 GLU B 434 CG CD OE1 OE2 REMARK 470 GLN B 436 CG CD OE1 NE2 REMARK 470 ARG B 437 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 438 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 439 CG CD1 CD2 REMARK 470 ASN B 440 CG OD1 ND2 REMARK 470 ASP B 441 CG OD1 OD2 REMARK 470 ARG B 444 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 445 CG CD OE1 OE2 REMARK 470 ARG B 447 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 448 CG1 CG2 CD1 REMARK 470 ARG B 449 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 450 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 452 CG CD OE1 NE2 REMARK 470 ARG B 457 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 459 CG CD OE1 OE2 REMARK 470 ILE B 461 CG1 CG2 CD1 REMARK 470 VAL B 467 CG1 CG2 REMARK 470 LYS B 469 CG CD CE NZ REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 HIS B 482 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 495 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 496 CG CD CE NZ REMARK 470 MET B 497 CG SD CE REMARK 470 LYS B 502 CG CD CE NZ REMARK 470 SER B 503 OG REMARK 470 ARG B 504 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 507 CG CD CE NZ REMARK 470 LYS B 509 CG CD CE NZ REMARK 470 HIS B 510 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 520 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 522 CG OD1 ND2 REMARK 470 LYS B 523 CG CD CE NZ REMARK 470 HIS B 524 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 529 CG CD OE1 NE2 REMARK 470 THR B 532 OG1 CG2 REMARK 470 LEU B 548 CG CD1 CD2 REMARK 470 GLU B 552 CG CD OE1 OE2 REMARK 470 ASP B 560 CG OD1 OD2 REMARK 470 ASP B 561 CG OD1 OD2 REMARK 470 ARG B 562 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 563 CG CD OE1 OE2 REMARK 470 LEU B 572 CG CD1 CD2 REMARK 470 SER B 573 OG REMARK 470 LYS B 575 CG CD CE NZ REMARK 470 ARG B 577 CD NE CZ NH1 NH2 REMARK 470 GLU B 578 CG CD OE1 OE2 REMARK 470 LEU B 579 CG CD1 CD2 REMARK 470 SER B 580 N OG REMARK 470 ASP B 587 CG OD1 OD2 REMARK 470 PHE B 588 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 591 CG CD CE NZ REMARK 470 LYS B 594 CG CD CE NZ REMARK 470 SER B 598 OG REMARK 470 ARG B 599 CG CD NE CZ NH1 NH2 REMARK 470 SER B 601 OG REMARK 470 THR B 602 OG1 CG2 REMARK 470 GLU B 607 CG CD OE1 OE2 REMARK 470 TYR B 608 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 610 CE NZ REMARK 470 LYS B 622 CG CD CE NZ REMARK 470 TYR B 655 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 657 OG REMARK 470 PRO B 658 CG CD REMARK 470 SER B 659 OG REMARK 470 HIS B 660 ND1 CD2 CE1 NE2 REMARK 470 GLU B 669 CG CD OE1 OE2 REMARK 470 ILE B 676 CG1 CG2 CD1 REMARK 470 TYR B 679 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 680 CG CD REMARK 470 ASN B 683 CG OD1 ND2 REMARK 470 ARG B 685 CD NE CZ NH1 NH2 REMARK 470 GLU B 693 CD OE1 OE2 REMARK 470 LYS B 696 CD CE NZ REMARK 470 THR B 700 OG1 CG2 REMARK 470 THR B 703 OG1 CG2 REMARK 470 LEU D 228 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 680 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 523 -81.10 -106.23 REMARK 500 GLU A 574 40.27 -104.86 REMARK 500 ASN A 596 22.76 -140.51 REMARK 500 ARG A 599 164.43 176.75 REMARK 500 HIS A 660 21.13 82.84 REMARK 500 MET B 497 -66.20 -136.42 REMARK 500 LYS B 523 -60.30 -103.31 REMARK 500 HIS B 524 70.98 -164.17 REMARK 500 ASP B 612 149.62 -38.49 REMARK 500 ASP B 640 9.56 -66.95 REMARK 500 HIS B 641 -6.04 76.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP C 232 REMARK 800 through PRO C 233 bound to SER C 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP D 232 REMARK 800 through PRO D 233 bound to SER D 231 DBREF 6MF5 A 418 705 UNP P32562 CDC5_YEAST 418 705 DBREF 6MF5 B 418 705 UNP P32562 CDC5_YEAST 418 705 DBREF 6MF5 C 227 237 PDB 6MF5 6MF5 227 237 DBREF 6MF5 D 227 237 PDB 6MF5 6MF5 227 237 SEQADV 6MF5 GLY A 416 UNP P32562 EXPRESSION TAG SEQADV 6MF5 ALA A 417 UNP P32562 EXPRESSION TAG SEQADV 6MF5 GLY B 416 UNP P32562 EXPRESSION TAG SEQADV 6MF5 ALA B 417 UNP P32562 EXPRESSION TAG SEQRES 1 A 290 GLY ALA LEU SER PRO GLY GLY THR LYS GLN LYS TYR LYS SEQRES 2 A 290 GLU VAL VAL ASP ILE GLU ALA GLN ARG ARG LEU ASN ASP SEQRES 3 A 290 LEU ALA ARG GLU ALA ARG ILE ARG ARG ALA GLN GLN ALA SEQRES 4 A 290 VAL LEU ARG LYS GLU LEU ILE ALA THR SER THR ASN VAL SEQRES 5 A 290 ILE LYS SER GLU ILE SER LEU ARG ILE LEU ALA SER GLU SEQRES 6 A 290 CYS HIS LEU THR LEU ASN GLY ILE VAL GLU ALA GLU ALA SEQRES 7 A 290 GLN TYR LYS MET GLY GLY LEU PRO LYS SER ARG LEU PRO SEQRES 8 A 290 LYS ILE LYS HIS PRO MET ILE VAL THR LYS TRP VAL ASP SEQRES 9 A 290 TYR SER ASN LYS HIS GLY PHE SER TYR GLN LEU SER THR SEQRES 10 A 290 GLU ASP ILE GLY VAL LEU PHE ASN ASN GLY THR THR VAL SEQRES 11 A 290 LEU ARG LEU ALA ASP ALA GLU GLU PHE TRP TYR ILE SER SEQRES 12 A 290 TYR ASP ASP ARG GLU GLY TRP VAL ALA SER HIS TYR LEU SEQRES 13 A 290 LEU SER GLU LYS PRO ARG GLU LEU SER ARG HIS LEU GLU SEQRES 14 A 290 VAL VAL ASP PHE PHE ALA LYS TYR MET LYS ALA ASN LEU SEQRES 15 A 290 SER ARG VAL SER THR PHE GLY ARG GLU GLU TYR HIS LYS SEQRES 16 A 290 ASP ASP VAL PHE LEU ARG ARG TYR THR ARG TYR LYS PRO SEQRES 17 A 290 PHE VAL MET PHE GLU LEU SER ASP GLY THR PHE GLN PHE SEQRES 18 A 290 ASN PHE LYS ASP HIS HIS LYS MET ALA ILE SER ASP GLY SEQRES 19 A 290 GLY LYS LEU VAL THR TYR ILE SER PRO SER HIS GLU SER SEQRES 20 A 290 THR THR TYR PRO LEU VAL GLU VAL LEU LYS TYR GLY GLU SEQRES 21 A 290 ILE PRO GLY TYR PRO GLU SER ASN PHE ARG GLU LYS LEU SEQRES 22 A 290 THR LEU ILE LYS GLU GLY LEU LYS GLN LYS SER THR ILE SEQRES 23 A 290 VAL THR VAL ASP SEQRES 1 B 290 GLY ALA LEU SER PRO GLY GLY THR LYS GLN LYS TYR LYS SEQRES 2 B 290 GLU VAL VAL ASP ILE GLU ALA GLN ARG ARG LEU ASN ASP SEQRES 3 B 290 LEU ALA ARG GLU ALA ARG ILE ARG ARG ALA GLN GLN ALA SEQRES 4 B 290 VAL LEU ARG LYS GLU LEU ILE ALA THR SER THR ASN VAL SEQRES 5 B 290 ILE LYS SER GLU ILE SER LEU ARG ILE LEU ALA SER GLU SEQRES 6 B 290 CYS HIS LEU THR LEU ASN GLY ILE VAL GLU ALA GLU ALA SEQRES 7 B 290 GLN TYR LYS MET GLY GLY LEU PRO LYS SER ARG LEU PRO SEQRES 8 B 290 LYS ILE LYS HIS PRO MET ILE VAL THR LYS TRP VAL ASP SEQRES 9 B 290 TYR SER ASN LYS HIS GLY PHE SER TYR GLN LEU SER THR SEQRES 10 B 290 GLU ASP ILE GLY VAL LEU PHE ASN ASN GLY THR THR VAL SEQRES 11 B 290 LEU ARG LEU ALA ASP ALA GLU GLU PHE TRP TYR ILE SER SEQRES 12 B 290 TYR ASP ASP ARG GLU GLY TRP VAL ALA SER HIS TYR LEU SEQRES 13 B 290 LEU SER GLU LYS PRO ARG GLU LEU SER ARG HIS LEU GLU SEQRES 14 B 290 VAL VAL ASP PHE PHE ALA LYS TYR MET LYS ALA ASN LEU SEQRES 15 B 290 SER ARG VAL SER THR PHE GLY ARG GLU GLU TYR HIS LYS SEQRES 16 B 290 ASP ASP VAL PHE LEU ARG ARG TYR THR ARG TYR LYS PRO SEQRES 17 B 290 PHE VAL MET PHE GLU LEU SER ASP GLY THR PHE GLN PHE SEQRES 18 B 290 ASN PHE LYS ASP HIS HIS LYS MET ALA ILE SER ASP GLY SEQRES 19 B 290 GLY LYS LEU VAL THR TYR ILE SER PRO SER HIS GLU SER SEQRES 20 B 290 THR THR TYR PRO LEU VAL GLU VAL LEU LYS TYR GLY GLU SEQRES 21 B 290 ILE PRO GLY TYR PRO GLU SER ASN PHE ARG GLU LYS LEU SEQRES 22 B 290 THR LEU ILE LYS GLU GLY LEU LYS GLN LYS SER THR ILE SEQRES 23 B 290 VAL THR VAL ASP SEQRES 1 C 11 SER LEU ALA GLN SER SEP PRO ALA GLY SER GLN SEQRES 1 D 11 SER LEU ALA GLN SER SEP PRO ALA GLY SER GLN HET SEP C 232 11 HET SEP D 232 11 HET CL A 801 1 HET CL B 801 1 HETNAM SEP PHOSPHOSERINE HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *11(H2 O) HELIX 1 AA1 GLN A 436 ALA A 451 1 16 HELIX 2 AA2 SER A 470 ALA A 493 1 24 HELIX 3 AA3 LEU A 579 LEU A 597 1 19 HELIX 4 AA4 ASP A 648 GLY A 650 5 3 HELIX 5 AA5 LEU A 667 GLY A 674 1 8 HELIX 6 AA6 ASN A 683 SER A 699 1 17 HELIX 7 AA7 GLN B 436 GLN B 452 1 17 HELIX 8 AA8 SER B 470 MET B 497 1 28 HELIX 9 AA9 TYR B 520 GLY B 525 1 6 HELIX 10 AB1 LEU B 579 LEU B 579 1 1 HELIX 11 AB2 ARG B 581 LEU B 597 1 17 HELIX 12 AB3 LEU B 667 GLY B 674 1 8 HELIX 13 AB4 PHE B 684 ILE B 701 1 18 SHEET 1 AA1 7 SER A 464 THR A 465 0 SHEET 2 AA1 7 LEU A 615 ARG A 620 -1 O ARG A 620 N SER A 464 SHEET 3 AA1 7 PHE A 624 LEU A 629 -1 O GLU A 628 N ARG A 617 SHEET 4 AA1 7 PHE A 634 PHE A 638 -1 O GLN A 635 N PHE A 627 SHEET 5 AA1 7 LYS A 643 SER A 647 -1 O ILE A 646 N PHE A 634 SHEET 6 AA1 7 LEU A 652 ILE A 656 -1 O ILE A 656 N LYS A 643 SHEET 7 AA1 7 SER A 662 PRO A 666 -1 O TYR A 665 N VAL A 653 SHEET 1 AA2 7 GLY A 564 LEU A 571 0 SHEET 2 AA2 7 GLU A 553 ASP A 560 -1 N SER A 558 O VAL A 566 SHEET 3 AA2 7 THR A 544 ARG A 547 -1 N THR A 544 O ILE A 557 SHEET 4 AA2 7 ILE A 535 LEU A 538 -1 N ILE A 535 O ARG A 547 SHEET 5 AA2 7 GLY A 525 LEU A 530 -1 N PHE A 526 O LEU A 538 SHEET 6 AA2 7 VAL A 514 TYR A 520 -1 N VAL A 518 O SER A 527 SHEET 7 AA2 7 ALA C 229 GLN C 230 -1 O ALA C 229 N ASP A 519 SHEET 1 AA3 7 SER B 464 THR B 465 0 SHEET 2 AA3 7 LEU B 615 ARG B 620 -1 O ARG B 620 N SER B 464 SHEET 3 AA3 7 PHE B 624 LEU B 629 -1 O MET B 626 N THR B 619 SHEET 4 AA3 7 PHE B 634 PHE B 638 -1 O GLN B 635 N PHE B 627 SHEET 5 AA3 7 LYS B 643 SER B 647 -1 O ILE B 646 N PHE B 634 SHEET 6 AA3 7 LEU B 652 ILE B 656 -1 O THR B 654 N ALA B 645 SHEET 7 AA3 7 SER B 662 PRO B 666 -1 O TYR B 665 N VAL B 653 SHEET 1 AA4 7 TRP B 565 LEU B 571 0 SHEET 2 AA4 7 GLU B 553 TYR B 559 -1 N SER B 558 O VAL B 566 SHEET 3 AA4 7 THR B 544 ARG B 547 -1 N THR B 544 O ILE B 557 SHEET 4 AA4 7 ILE B 535 LEU B 538 -1 N ILE B 535 O ARG B 547 SHEET 5 AA4 7 PHE B 526 LEU B 530 -1 N PHE B 526 O LEU B 538 SHEET 6 AA4 7 VAL B 514 ASP B 519 -1 N THR B 515 O GLN B 529 SHEET 7 AA4 7 ALA D 229 GLN D 230 -1 O ALA D 229 N ASP B 519 LINK C SER C 231 N SEP C 232 1555 1555 1.33 LINK C SEP C 232 N PRO C 233 1555 1555 1.36 LINK C SER D 231 N SEP D 232 1555 1555 1.33 LINK C SEP D 232 N PRO D 233 1555 1555 1.35 SITE 1 AC1 3 SER A 464 SER A 521 TYR A 618 SITE 1 AC2 2 THR B 465 SER B 521 SITE 1 AC3 7 ASN A 596 LEU A 597 SER A 598 HIS A 641 SITE 2 AC3 7 LYS A 643 SER C 231 ALA C 234 SITE 1 AC4 5 SER B 598 HIS B 641 LYS B 643 SER D 231 SITE 2 AC4 5 ALA D 234 CRYST1 51.470 68.190 86.230 90.00 102.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019429 0.000000 0.004339 0.00000 SCALE2 0.000000 0.014665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011883 0.00000