HEADER HYDROLASE/RNA 11-SEP-18 6MFN TITLE HUMAN ARGONAUTE2-MIR-27A BOUND TO HSUR1 TARGET RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGONAUTE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAGO2, ARGONAUTE RISC CATALYTIC COMPONENT 2, EUKARYOTIC COMPND 5 TRANSLATION INITIATION FACTOR 2C 2, EIF2C 2, PAZ PIWI DOMAIN PROTEIN, COMPND 6 PPD, PROTEIN SLICER; COMPND 7 EC: 3.1.26.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RNA (5'-R(P*UP*UP*CP*AP*CP*AP*GP*UP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: RNA (5'-R(P*UP*CP*UP*GP*UP*GP*AP*UP*AP*A)-3'); COMPND 16 CHAIN: E; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGO2, EIF2C2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS RNA-BINDING PROTEIN, MICRORNA, TARGET DIRECTED MICRORNA DECAY, KEYWDS 2 HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SHEU-GRUTTADAURIA,I.J.MACRAE REVDAT 4 11-OCT-23 6MFN 1 REMARK REVDAT 3 01-JAN-20 6MFN 1 REMARK REVDAT 2 02-OCT-19 6MFN 1 JRNL REVDAT 1 07-AUG-19 6MFN 0 JRNL AUTH J.SHEU-GRUTTADAURIA,P.PAWLICA,S.M.KLUM,S.WANG,T.A.YARIO, JRNL AUTH 2 N.T.SCHIRLE OAKDALE,J.A.STEITZ,I.J.MACRAE JRNL TITL STRUCTURAL BASIS FOR TARGET-DIRECTED MICRORNA DEGRADATION. JRNL REF MOL.CELL V. 75 1243 2019 JRNL REFN ISSN 1097-2765 JRNL PMID 31353209 JRNL DOI 10.1016/J.MOLCEL.2019.06.019 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5964 - 5.8548 0.99 2915 175 0.1805 0.2105 REMARK 3 2 5.8548 - 4.6536 0.99 2846 106 0.1738 0.2247 REMARK 3 3 4.6536 - 4.0672 1.00 2787 147 0.1720 0.1915 REMARK 3 4 4.0672 - 3.6962 0.99 2710 172 0.1977 0.2274 REMARK 3 5 3.6962 - 3.4318 0.99 2753 124 0.2216 0.2779 REMARK 3 6 3.4318 - 3.2297 0.99 2713 175 0.2374 0.2768 REMARK 3 7 3.2297 - 3.0682 0.99 2727 136 0.2425 0.2808 REMARK 3 8 3.0682 - 2.9347 0.99 2728 133 0.2415 0.3188 REMARK 3 9 2.9347 - 2.8219 0.99 2702 156 0.2540 0.2605 REMARK 3 10 2.8219 - 2.7246 1.00 2733 138 0.2580 0.3088 REMARK 3 11 2.7246 - 2.6394 1.00 2715 136 0.2582 0.2871 REMARK 3 12 2.6394 - 2.5640 1.00 2730 130 0.2731 0.3279 REMARK 3 13 2.5640 - 2.4966 0.98 2653 147 0.3011 0.3634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7014 REMARK 3 ANGLE : 0.706 9573 REMARK 3 CHIRALITY : 0.027 1079 REMARK 3 PLANARITY : 0.003 1172 REMARK 3 DIHEDRAL : 13.176 2695 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5912 40.2652 -13.3395 REMARK 3 T TENSOR REMARK 3 T11: 0.5782 T22: 0.3976 REMARK 3 T33: 0.6215 T12: 0.0176 REMARK 3 T13: 0.0495 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.2993 L22: 2.6848 REMARK 3 L33: 2.0608 L12: 0.7950 REMARK 3 L13: -0.7174 L23: 0.0860 REMARK 3 S TENSOR REMARK 3 S11: 0.2183 S12: 0.1445 S13: 0.7314 REMARK 3 S21: -0.4768 S22: -0.0156 S23: -0.1158 REMARK 3 S31: -0.8041 S32: 0.0875 S33: -0.2118 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2884 24.5090 -44.2310 REMARK 3 T TENSOR REMARK 3 T11: 0.5194 T22: 0.4800 REMARK 3 T33: 0.4049 T12: 0.0019 REMARK 3 T13: 0.0412 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 0.8981 L22: -0.7398 REMARK 3 L33: 8.2461 L12: 0.4617 REMARK 3 L13: -2.6923 L23: -0.8862 REMARK 3 S TENSOR REMARK 3 S11: -0.1719 S12: 0.0086 S13: 0.0019 REMARK 3 S21: 0.0961 S22: 0.1167 S23: 0.0759 REMARK 3 S31: 0.5857 S32: -0.1547 S33: 0.0324 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 570 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2390 6.9548 -25.5745 REMARK 3 T TENSOR REMARK 3 T11: 0.4396 T22: 0.3394 REMARK 3 T33: 0.3571 T12: 0.0881 REMARK 3 T13: -0.0939 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.7261 L22: 1.4185 REMARK 3 L33: 1.4607 L12: 0.3860 REMARK 3 L13: 0.5808 L23: 0.3933 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: 0.2186 S13: -0.1761 REMARK 3 S21: -0.4542 S22: -0.1015 S23: 0.2711 REMARK 3 S31: 0.1056 S32: -0.1977 S33: -0.0152 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 571 THROUGH 859 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5295 22.1749 -13.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.2671 T22: 0.3067 REMARK 3 T33: 0.3553 T12: -0.0122 REMARK 3 T13: -0.0122 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.5101 L22: 1.5747 REMARK 3 L33: 1.4377 L12: -0.5728 REMARK 3 L13: 0.4210 L23: -0.0795 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: -0.0725 S13: 0.2100 REMARK 3 S21: -0.1788 S22: -0.1036 S23: 0.2316 REMARK 3 S31: -0.1992 S32: -0.1354 S33: 0.0438 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8336 11.0936 -25.8325 REMARK 3 T TENSOR REMARK 3 T11: 0.5783 T22: 0.4485 REMARK 3 T33: 0.4192 T12: -0.1111 REMARK 3 T13: 0.0679 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 5.0705 L22: 4.4561 REMARK 3 L33: 6.2041 L12: -4.6339 REMARK 3 L13: -0.1764 L23: -1.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.4432 S13: 0.9360 REMARK 3 S21: -0.7625 S22: 0.0839 S23: -0.3143 REMARK 3 S31: -1.0671 S32: 1.0006 S33: -0.0774 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 13 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2938 2.9995 -27.9053 REMARK 3 T TENSOR REMARK 3 T11: 0.5449 T22: 0.5749 REMARK 3 T33: 0.4382 T12: 0.0630 REMARK 3 T13: 0.0281 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 4.3686 L22: 6.0836 REMARK 3 L33: 2.7323 L12: 0.1308 REMARK 3 L13: -1.0189 L23: 0.3278 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: 0.3053 S13: 0.3196 REMARK 3 S21: -1.0697 S22: -0.0701 S23: 0.5238 REMARK 3 S31: -0.0552 S32: 0.0563 S33: -0.0180 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033230 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4W5O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 50 MM TRIS, PH 8.0, 20 MM REMARK 280 MAGNESIUM CHLORIDE, 75 MM PHENOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.10600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.42900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.10600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.42900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 21 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 ARG A 126 REMARK 465 GLY A 187 REMARK 465 CYS A 188 REMARK 465 SER A 189 REMARK 465 GLY A 273 REMARK 465 GLN A 274 REMARK 465 MET A 275 REMARK 465 ALA A 603 REMARK 465 GLY A 604 REMARK 465 ASP A 605 REMARK 465 GLY A 606 REMARK 465 LYS A 607 REMARK 465 LYS A 820 REMARK 465 GLU A 821 REMARK 465 HIS A 822 REMARK 465 ASP A 823 REMARK 465 ALA A 824 REMARK 465 ALA A 825 REMARK 465 GLU A 826 REMARK 465 GLY A 827 REMARK 465 ASP A 828 REMARK 465 HIS A 829 REMARK 465 THR A 830 REMARK 465 ASP A 831 REMARK 465 GLY A 832 REMARK 465 GLN A 833 REMARK 465 ALA A 834 REMARK 465 ASN A 835 REMARK 465 GLY A 836 REMARK 465 ARG A 837 REMARK 465 G C 10 REMARK 465 C C 11 REMARK 465 U C 12 REMARK 465 A C 13 REMARK 465 A C 14 REMARK 465 G C 15 REMARK 465 U C 16 REMARK 465 U C 17 REMARK 465 C C 18 REMARK 465 C C 19 REMARK 465 G C 20 REMARK 465 C C 21 REMARK 465 C E 1 REMARK 465 U E 2 REMARK 465 G E 3 REMARK 465 G E 4 REMARK 465 A E 5 REMARK 465 A E 6 REMARK 465 C E 7 REMARK 465 U E 8 REMARK 465 U E 9 REMARK 465 A E 10 REMARK 465 A E 11 REMARK 465 A E 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G C 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 G C 9 C1' N9 C8 N7 C5 C6 O6 REMARK 470 G C 9 N1 C2 N2 N3 C4 REMARK 470 U E 20 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U E 20 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U E 20 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 374 O HOH A 1001 2.10 REMARK 500 OE2 GLU A 76 OH TYR A 393 2.15 REMARK 500 O THR A 855 O HOH A 1002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U C 1 P U C 1 OP3 -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 23 -52.32 -132.76 REMARK 500 ASP A 30 -175.68 -172.57 REMARK 500 ASN A 43 47.92 -77.41 REMARK 500 PRO A 67 171.64 -58.19 REMARK 500 PHE A 82 48.41 -89.97 REMARK 500 ILE A 86 -74.52 -122.14 REMARK 500 ARG A 97 -90.70 -118.39 REMARK 500 PRO A 107 76.98 -61.29 REMARK 500 VAL A 135 -67.74 -100.70 REMARK 500 SER A 148 -159.99 -88.34 REMARK 500 TRP A 211 -45.27 63.94 REMARK 500 VAL A 330 -168.54 -113.86 REMARK 500 GLU A 333 -123.89 47.91 REMARK 500 GLN A 334 53.76 -98.24 REMARK 500 ALA A 369 61.82 -119.26 REMARK 500 MET A 483 70.73 -119.97 REMARK 500 GLN A 486 45.59 -90.71 REMARK 500 ALA A 513 104.54 -57.33 REMARK 500 PRO A 523 58.07 -91.21 REMARK 500 ASN A 623 -58.43 -122.53 REMARK 500 ASP A 697 40.91 -103.59 REMARK 500 LYS A 739 -43.92 64.72 REMARK 500 THR A 744 -37.74 -131.01 REMARK 500 ASP A 770 87.93 -155.18 REMARK 500 MET A 856 63.09 -107.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 901 DBREF 6MFN A 1 859 UNP Q9UKV8 AGO2_HUMAN 1 859 DBREF 6MFN C 1 21 PDB 6MFN 6MFN 1 21 DBREF 6MFN E 1 22 PDB 6MFN 6MFN 1 22 SEQADV 6MFN ASP A 387 UNP Q9UKV8 SER 387 ENGINEERED MUTATION SEQADV 6MFN ALA A 669 UNP Q9UKV8 ASP 669 ENGINEERED MUTATION SEQADV 6MFN ALA A 824 UNP Q9UKV8 SER 824 ENGINEERED MUTATION SEQADV 6MFN ASP A 828 UNP Q9UKV8 SER 828 ENGINEERED MUTATION SEQADV 6MFN ASP A 831 UNP Q9UKV8 SER 831 ENGINEERED MUTATION SEQADV 6MFN ALA A 834 UNP Q9UKV8 SER 834 ENGINEERED MUTATION SEQRES 1 A 859 MET TYR SER GLY ALA GLY PRO ALA LEU ALA PRO PRO ALA SEQRES 2 A 859 PRO PRO PRO PRO ILE GLN GLY TYR ALA PHE LYS PRO PRO SEQRES 3 A 859 PRO ARG PRO ASP PHE GLY THR SER GLY ARG THR ILE LYS SEQRES 4 A 859 LEU GLN ALA ASN PHE PHE GLU MET ASP ILE PRO LYS ILE SEQRES 5 A 859 ASP ILE TYR HIS TYR GLU LEU ASP ILE LYS PRO GLU LYS SEQRES 6 A 859 CYS PRO ARG ARG VAL ASN ARG GLU ILE VAL GLU HIS MET SEQRES 7 A 859 VAL GLN HIS PHE LYS THR GLN ILE PHE GLY ASP ARG LYS SEQRES 8 A 859 PRO VAL PHE ASP GLY ARG LYS ASN LEU TYR THR ALA MET SEQRES 9 A 859 PRO LEU PRO ILE GLY ARG ASP LYS VAL GLU LEU GLU VAL SEQRES 10 A 859 THR LEU PRO GLY GLU GLY LYS ASP ARG ILE PHE LYS VAL SEQRES 11 A 859 SER ILE LYS TRP VAL SER CYS VAL SER LEU GLN ALA LEU SEQRES 12 A 859 HIS ASP ALA LEU SER GLY ARG LEU PRO SER VAL PRO PHE SEQRES 13 A 859 GLU THR ILE GLN ALA LEU ASP VAL VAL MET ARG HIS LEU SEQRES 14 A 859 PRO SER MET ARG TYR THR PRO VAL GLY ARG SER PHE PHE SEQRES 15 A 859 THR ALA SER GLU GLY CYS SER ASN PRO LEU GLY GLY GLY SEQRES 16 A 859 ARG GLU VAL TRP PHE GLY PHE HIS GLN SER VAL ARG PRO SEQRES 17 A 859 SER LEU TRP LYS MET MET LEU ASN ILE ASP VAL SER ALA SEQRES 18 A 859 THR ALA PHE TYR LYS ALA GLN PRO VAL ILE GLU PHE VAL SEQRES 19 A 859 CYS GLU VAL LEU ASP PHE LYS SER ILE GLU GLU GLN GLN SEQRES 20 A 859 LYS PRO LEU THR ASP SER GLN ARG VAL LYS PHE THR LYS SEQRES 21 A 859 GLU ILE LYS GLY LEU LYS VAL GLU ILE THR HIS CYS GLY SEQRES 22 A 859 GLN MET LYS ARG LYS TYR ARG VAL CYS ASN VAL THR ARG SEQRES 23 A 859 ARG PRO ALA SER HIS GLN THR PHE PRO LEU GLN GLN GLU SEQRES 24 A 859 SER GLY GLN THR VAL GLU CYS THR VAL ALA GLN TYR PHE SEQRES 25 A 859 LYS ASP ARG HIS LYS LEU VAL LEU ARG TYR PRO HIS LEU SEQRES 26 A 859 PRO CYS LEU GLN VAL GLY GLN GLU GLN LYS HIS THR TYR SEQRES 27 A 859 LEU PRO LEU GLU VAL CYS ASN ILE VAL ALA GLY GLN ARG SEQRES 28 A 859 CYS ILE LYS LYS LEU THR ASP ASN GLN THR SER THR MET SEQRES 29 A 859 ILE ARG ALA THR ALA ARG SER ALA PRO ASP ARG GLN GLU SEQRES 30 A 859 GLU ILE SER LYS LEU MET ARG SER ALA ASP PHE ASN THR SEQRES 31 A 859 ASP PRO TYR VAL ARG GLU PHE GLY ILE MET VAL LYS ASP SEQRES 32 A 859 GLU MET THR ASP VAL THR GLY ARG VAL LEU GLN PRO PRO SEQRES 33 A 859 SER ILE LEU TYR GLY GLY ARG ASN LYS ALA ILE ALA THR SEQRES 34 A 859 PRO VAL GLN GLY VAL TRP ASP MET ARG ASN LYS GLN PHE SEQRES 35 A 859 HIS THR GLY ILE GLU ILE LYS VAL TRP ALA ILE ALA CYS SEQRES 36 A 859 PHE ALA PRO GLN ARG GLN CYS THR GLU VAL HIS LEU LYS SEQRES 37 A 859 SER PHE THR GLU GLN LEU ARG LYS ILE SER ARG ASP ALA SEQRES 38 A 859 GLY MET PRO ILE GLN GLY GLN PRO CYS PHE CYS LYS TYR SEQRES 39 A 859 ALA GLN GLY ALA ASP SER VAL GLU PRO MET PHE ARG HIS SEQRES 40 A 859 LEU LYS ASN THR TYR ALA GLY LEU GLN LEU VAL VAL VAL SEQRES 41 A 859 ILE LEU PRO GLY LYS THR PRO VAL TYR ALA GLU VAL LYS SEQRES 42 A 859 ARG VAL GLY ASP THR VAL LEU GLY MET ALA THR GLN CYS SEQRES 43 A 859 VAL GLN MET LYS ASN VAL GLN ARG THR THR PRO GLN THR SEQRES 44 A 859 LEU SER ASN LEU CYS LEU LYS ILE ASN VAL LYS LEU GLY SEQRES 45 A 859 GLY VAL ASN ASN ILE LEU LEU PRO GLN GLY ARG PRO PRO SEQRES 46 A 859 VAL PHE GLN GLN PRO VAL ILE PHE LEU GLY ALA ASP VAL SEQRES 47 A 859 THR HIS PRO PRO ALA GLY ASP GLY LYS LYS PRO SER ILE SEQRES 48 A 859 ALA ALA VAL VAL GLY SER MET ASP ALA HIS PRO ASN ARG SEQRES 49 A 859 TYR CYS ALA THR VAL ARG VAL GLN GLN HIS ARG GLN GLU SEQRES 50 A 859 ILE ILE GLN ASP LEU ALA ALA MET VAL ARG GLU LEU LEU SEQRES 51 A 859 ILE GLN PHE TYR LYS SER THR ARG PHE LYS PRO THR ARG SEQRES 52 A 859 ILE ILE PHE TYR ARG ALA GLY VAL SER GLU GLY GLN PHE SEQRES 53 A 859 GLN GLN VAL LEU HIS HIS GLU LEU LEU ALA ILE ARG GLU SEQRES 54 A 859 ALA CYS ILE LYS LEU GLU LYS ASP TYR GLN PRO GLY ILE SEQRES 55 A 859 THR PHE ILE VAL VAL GLN LYS ARG HIS HIS THR ARG LEU SEQRES 56 A 859 PHE CYS THR ASP LYS ASN GLU ARG VAL GLY LYS SER GLY SEQRES 57 A 859 ASN ILE PRO ALA GLY THR THR VAL ASP THR LYS ILE THR SEQRES 58 A 859 HIS PRO THR GLU PHE ASP PHE TYR LEU CYS SER HIS ALA SEQRES 59 A 859 GLY ILE GLN GLY THR SER ARG PRO SER HIS TYR HIS VAL SEQRES 60 A 859 LEU TRP ASP ASP ASN ARG PHE SER SER ASP GLU LEU GLN SEQRES 61 A 859 ILE LEU THR TYR GLN LEU CYS HIS THR TYR VAL ARG CYS SEQRES 62 A 859 THR ARG SER VAL SER ILE PRO ALA PRO ALA TYR TYR ALA SEQRES 63 A 859 HIS LEU VAL ALA PHE ARG ALA ARG TYR HIS LEU VAL ASP SEQRES 64 A 859 LYS GLU HIS ASP ALA ALA GLU GLY ASP HIS THR ASP GLY SEQRES 65 A 859 GLN ALA ASN GLY ARG ASP HIS GLN ALA LEU ALA LYS ALA SEQRES 66 A 859 VAL GLN VAL HIS GLN ASP THR LEU ARG THR MET TYR PHE SEQRES 67 A 859 ALA SEQRES 1 C 21 U U C A C A G U G G C U A SEQRES 2 C 21 A G U U C C G C SEQRES 1 E 22 C U G G A A C U U A A A U SEQRES 2 E 22 C U G U G A U A A HET IPH A 901 7 HETNAM IPH PHENOL FORMUL 4 IPH C6 H6 O FORMUL 5 HOH *87(H2 O) HELIX 1 AA1 PRO A 67 PHE A 82 1 16 HELIX 2 AA2 LEU A 140 SER A 148 1 9 HELIX 3 AA3 PRO A 155 HIS A 168 1 14 HELIX 4 AA4 LEU A 169 TYR A 174 1 6 HELIX 5 AA5 PRO A 229 LEU A 238 1 10 HELIX 6 AA6 SER A 242 GLN A 246 5 5 HELIX 7 AA7 THR A 251 LYS A 263 1 13 HELIX 8 AA8 VAL A 308 ARG A 315 1 8 HELIX 9 AA9 GLN A 332 HIS A 336 5 5 HELIX 10 AB1 THR A 357 ALA A 369 1 13 HELIX 11 AB2 SER A 371 SER A 385 1 15 HELIX 12 AB3 ALA A 386 THR A 390 5 5 HELIX 13 AB4 ASP A 391 PHE A 397 1 7 HELIX 14 AB5 THR A 463 ALA A 481 1 19 HELIX 15 AB6 GLY A 497 ASP A 499 5 3 HELIX 16 AB7 SER A 500 TYR A 512 1 13 HELIX 17 AB8 THR A 526 THR A 538 1 13 HELIX 18 AB9 MET A 549 ARG A 554 1 6 HELIX 19 AC1 THR A 556 LEU A 571 1 16 HELIX 20 AC2 PRO A 580 ARG A 583 5 4 HELIX 21 AC3 PRO A 584 GLN A 589 5 6 HELIX 22 AC4 ASP A 641 ARG A 658 1 18 HELIX 23 AC5 SER A 672 GLY A 674 5 3 HELIX 24 AC6 GLN A 675 GLU A 695 1 21 HELIX 25 AC7 ASP A 719 ARG A 723 5 5 HELIX 26 AC8 SER A 775 CYS A 787 1 13 HELIX 27 AC9 PRO A 800 LEU A 817 1 18 HELIX 28 AD1 HIS A 839 VAL A 846 1 8 SHEET 1 AA111 TYR A 625 GLN A 632 0 SHEET 2 AA111 SER A 610 SER A 617 -1 N ALA A 612 O ARG A 630 SHEET 3 AA111 VAL A 591 THR A 599 -1 N THR A 599 O ILE A 611 SHEET 4 AA111 ARG A 663 ALA A 669 1 O ILE A 665 N LEU A 594 SHEET 5 AA111 GLY A 701 GLN A 708 1 O VAL A 707 N ARG A 668 SHEET 6 AA111 SER A 763 ASP A 770 -1 O HIS A 766 N VAL A 706 SHEET 7 AA111 ASP A 747 CYS A 751 -1 N LEU A 750 O SER A 763 SHEET 8 AA111 THR A 734 VAL A 736 -1 N VAL A 736 O TYR A 749 SHEET 9 AA111 THR A 406 VAL A 412 -1 N ARG A 411 O THR A 735 SHEET 10 AA111 ARG A 36 ALA A 42 -1 N ARG A 36 O VAL A 412 SHEET 11 AA111 LEU A 715 CYS A 717 -1 O PHE A 716 N GLN A 41 SHEET 1 AA2 6 THR A 175 VAL A 177 0 SHEET 2 AA2 6 SER A 180 GLU A 186 -1 O PHE A 182 N THR A 175 SHEET 3 AA2 6 ARG A 196 PRO A 208 -1 O PHE A 202 N PHE A 181 SHEET 4 AA2 6 MET A 213 TYR A 225 -1 O MET A 214 N ARG A 207 SHEET 5 AA2 6 PHE A 44 ASP A 48 -1 N MET A 47 O MET A 213 SHEET 6 AA2 6 MET A 400 VAL A 401 -1 O MET A 400 N ASP A 48 SHEET 1 AA3 5 VAL A 93 PHE A 94 0 SHEET 2 AA3 5 ASN A 99 THR A 102 -1 O TYR A 101 N VAL A 93 SHEET 3 AA3 5 ASP A 53 LYS A 62 -1 N TYR A 57 O LEU A 100 SHEET 4 AA3 5 PHE A 128 SER A 139 -1 O SER A 131 N ASP A 60 SHEET 5 AA3 5 VAL A 113 VAL A 117 -1 N VAL A 113 O ILE A 132 SHEET 1 AA4 3 LYS A 278 ARG A 280 0 SHEET 2 AA4 3 LYS A 266 ILE A 269 -1 N VAL A 267 O TYR A 279 SHEET 3 AA4 3 CYS A 344 ILE A 346 -1 O ASN A 345 N GLU A 268 SHEET 1 AA5 3 ASN A 283 PRO A 288 0 SHEET 2 AA5 3 PRO A 326 VAL A 330 -1 O GLN A 329 N ASN A 283 SHEET 3 AA5 3 THR A 337 PRO A 340 -1 O LEU A 339 N LEU A 328 SHEET 1 AA6 2 THR A 293 GLN A 297 0 SHEET 2 AA6 2 THR A 303 THR A 307 -1 O CYS A 306 N PHE A 294 SHEET 1 AA7 3 ILE A 427 ALA A 428 0 SHEET 2 AA7 3 ILE A 418 LEU A 419 -1 N ILE A 418 O ALA A 428 SHEET 3 AA7 3 ILE A 577 LEU A 578 -1 O ILE A 577 N LEU A 419 SHEET 1 AA8 4 PHE A 491 TYR A 494 0 SHEET 2 AA8 4 TRP A 451 CYS A 455 1 N CYS A 455 O LYS A 493 SHEET 3 AA8 4 LEU A 517 LEU A 522 1 O VAL A 519 N ALA A 452 SHEET 4 AA8 4 THR A 544 GLN A 548 1 O VAL A 547 N VAL A 520 CISPEP 1 LYS A 62 PRO A 63 0 -2.01 CISPEP 2 HIS A 621 PRO A 622 0 -8.12 SITE 1 AC1 6 PHE A 587 GLN A 589 PRO A 590 VAL A 591 SITE 2 AC1 6 ALA A 620 PHE A 653 CRYST1 66.948 104.212 152.858 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006542 0.00000