HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 17-SEP-18 6MH1 TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX TITLE 2 WITH HU-10, A 1,4,5-TRISUBSTITUTED IMIDAZOLE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMO 1 DOMAIN, RESIDUES 44-168; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS CAP, HUNK1, MCAP, PROTEIN BINDING-INHIBITOR COMPLEX, INHIBITOR, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX, INFLAMMATION, MAP-KINASE KEYWDS 3 INHIBITION, TRANSCRIPTION-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.-Y.ZHU,E.SCHONBRUNN REVDAT 3 13-MAR-24 6MH1 1 REMARK REVDAT 2 27-NOV-19 6MH1 1 REMARK REVDAT 1 07-AUG-19 6MH1 0 JRNL AUTH A.DIVAKARAN,S.K.TALLURI,A.M.AYOUB,N.K.MISHRA,H.CUI, JRNL AUTH 2 J.C.WIDEN,N.BERNDT,J.Y.ZHU,A.S.CARLSON,J.J.TOPCZEWSKI, JRNL AUTH 3 E.K.SCHONBRUNN,D.A.HARKI,W.C.K.POMERANTZ JRNL TITL MOLECULAR BASIS FOR THE N-TERMINAL JRNL TITL 2 BROMODOMAIN-AND-EXTRA-TERMINAL-FAMILY SELECTIVITY OF A DUAL JRNL TITL 3 KINASE-BROMODOMAIN INHIBITOR. JRNL REF J.MED.CHEM. V. 61 9316 2018 JRNL REFN ISSN 0022-2623 JRNL PMID 30253095 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01248 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 36514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7601 - 3.7598 0.99 2904 154 0.1392 0.1731 REMARK 3 2 3.7598 - 2.9852 1.00 2794 147 0.1447 0.1848 REMARK 3 3 2.9852 - 2.6081 1.00 2765 145 0.1583 0.2104 REMARK 3 4 2.6081 - 2.3697 1.00 2752 145 0.1609 0.1901 REMARK 3 5 2.3697 - 2.1999 1.00 2726 143 0.1587 0.1969 REMARK 3 6 2.1999 - 2.0703 1.00 2725 144 0.1637 0.2089 REMARK 3 7 2.0703 - 1.9666 0.99 2702 142 0.1728 0.2107 REMARK 3 8 1.9666 - 1.8810 1.00 2707 143 0.1738 0.2130 REMARK 3 9 1.8810 - 1.8086 0.99 2679 141 0.1756 0.2292 REMARK 3 10 1.8086 - 1.7462 0.98 2626 138 0.1748 0.2401 REMARK 3 11 1.7462 - 1.6916 0.96 2607 137 0.1875 0.2368 REMARK 3 12 1.6916 - 1.6433 0.91 2472 130 0.1866 0.2497 REMARK 3 13 1.6433 - 1.6000 0.83 2229 117 0.2115 0.2837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2267 REMARK 3 ANGLE : 1.259 3082 REMARK 3 CHIRALITY : 0.049 318 REMARK 3 PLANARITY : 0.008 394 REMARK 3 DIHEDRAL : 12.661 873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3541 25.1628 4.4696 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1483 REMARK 3 T33: 0.1416 T12: -0.0487 REMARK 3 T13: 0.0265 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.6042 L22: 1.3200 REMARK 3 L33: 3.2272 L12: -0.6655 REMARK 3 L13: 0.0609 L23: 1.0238 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: 0.6176 S13: -0.0507 REMARK 3 S21: -0.0726 S22: 0.0150 S23: -0.1346 REMARK 3 S31: 0.1116 S32: 0.1622 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1851 34.8348 14.3025 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.1005 REMARK 3 T33: 0.1238 T12: -0.0304 REMARK 3 T13: 0.0332 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.1793 L22: 1.9522 REMARK 3 L33: 2.9513 L12: -0.2823 REMARK 3 L13: -0.5788 L23: 0.6638 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0636 S13: 0.0348 REMARK 3 S21: 0.0187 S22: 0.0659 S23: -0.1688 REMARK 3 S31: -0.2110 S32: 0.1710 S33: -0.0410 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6028 24.5694 6.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.7261 REMARK 3 T33: 0.5625 T12: 0.0481 REMARK 3 T13: 0.1158 T23: -0.2238 REMARK 3 L TENSOR REMARK 3 L11: 5.7856 L22: 2.0291 REMARK 3 L33: 4.7874 L12: -2.7028 REMARK 3 L13: -3.1020 L23: -0.0984 REMARK 3 S TENSOR REMARK 3 S11: -0.1981 S12: 1.2227 S13: -1.2328 REMARK 3 S21: -0.4042 S22: -0.3708 S23: 0.2200 REMARK 3 S31: 0.7037 S32: 0.1072 S33: 0.5537 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8643 59.3863 7.2594 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.2010 REMARK 3 T33: 0.2061 T12: -0.0136 REMARK 3 T13: -0.0068 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 5.3177 L22: 7.9633 REMARK 3 L33: 3.0352 L12: -5.6266 REMARK 3 L13: -3.8116 L23: 4.4635 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.4079 S13: -0.2551 REMARK 3 S21: -0.1915 S22: -0.1803 S23: 0.5302 REMARK 3 S31: -0.0329 S32: -0.4879 S33: 0.2195 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0197 50.5066 4.8076 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.1419 REMARK 3 T33: 0.1334 T12: -0.0365 REMARK 3 T13: 0.0636 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 4.0581 L22: 2.4087 REMARK 3 L33: 4.4744 L12: -0.3326 REMARK 3 L13: 1.1276 L23: 1.9097 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: 0.2784 S13: -0.2146 REMARK 3 S21: -0.0384 S22: -0.0001 S23: -0.0691 REMARK 3 S31: 0.5550 S32: 0.0945 S33: -0.1702 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8055 56.0381 19.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.1511 REMARK 3 T33: 0.1539 T12: 0.0238 REMARK 3 T13: 0.0046 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.6210 L22: 1.5117 REMARK 3 L33: 5.9773 L12: -1.9571 REMARK 3 L13: -3.8124 L23: 2.6983 REMARK 3 S TENSOR REMARK 3 S11: -0.2688 S12: -0.3970 S13: -0.2387 REMARK 3 S21: 0.3623 S22: 0.3367 S23: -0.1413 REMARK 3 S31: 0.3872 S32: 0.5087 S33: 0.0173 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7454 62.5674 24.8047 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.1195 REMARK 3 T33: 0.0845 T12: 0.0430 REMARK 3 T13: 0.0014 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 4.8977 L22: 3.3637 REMARK 3 L33: 5.6157 L12: 2.6198 REMARK 3 L13: -0.0523 L23: -0.3675 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.4086 S13: -0.1835 REMARK 3 S21: 0.5133 S22: 0.0221 S23: -0.1255 REMARK 3 S31: 0.1611 S32: -0.1015 S33: 0.0097 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9364 65.6173 17.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1864 REMARK 3 T33: 0.2323 T12: -0.0080 REMARK 3 T13: 0.0542 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 5.8862 L22: 0.0544 REMARK 3 L33: 2.3128 L12: -0.5287 REMARK 3 L13: 0.4234 L23: 0.0839 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: -0.1781 S13: 0.1388 REMARK 3 S21: 0.2056 S22: 0.1413 S23: 0.4616 REMARK 3 S31: -0.0621 S32: -0.4510 S33: 0.0028 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7740 62.5353 8.9925 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.0979 REMARK 3 T33: 0.0597 T12: -0.0195 REMARK 3 T13: -0.0068 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.3454 L22: 4.3502 REMARK 3 L33: 1.9641 L12: -1.6454 REMARK 3 L13: -1.4199 L23: 1.4669 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: 0.0924 S13: -0.1050 REMARK 3 S21: -0.0422 S22: 0.0322 S23: 0.0386 REMARK 3 S31: 0.0633 S32: 0.0191 S33: 0.0005 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3777 69.3240 19.7310 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1191 REMARK 3 T33: 0.1168 T12: -0.0258 REMARK 3 T13: -0.0180 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.7245 L22: 3.3417 REMARK 3 L33: 3.2126 L12: -1.8162 REMARK 3 L13: -1.0841 L23: 0.7386 REMARK 3 S TENSOR REMARK 3 S11: -0.1344 S12: -0.3609 S13: 0.1564 REMARK 3 S21: 0.1786 S22: 0.2087 S23: -0.3344 REMARK 3 S31: -0.1823 S32: 0.3497 S33: 0.0096 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6018 54.4640 6.3262 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.3803 REMARK 3 T33: 0.5430 T12: 0.1675 REMARK 3 T13: 0.1474 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.1236 L22: 1.0916 REMARK 3 L33: 2.1693 L12: -1.0818 REMARK 3 L13: -1.1256 L23: 1.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.1475 S12: 0.6060 S13: -0.5971 REMARK 3 S21: -0.2168 S22: -0.0827 S23: -0.3410 REMARK 3 S31: 0.4533 S32: 0.6097 S33: -0.2142 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.755 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.643 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.72 REMARK 200 R MERGE FOR SHELL (I) : 0.12600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5 MG/ML BRD4, 5MM HEPES PH 7.5, REMARK 280 50MM SODIUM CHLORIDE, 0.5MM DTT, 50MM TRIS PH8.5, 0.1M AMMONIUM, REMARK 280 SULFATE, 12.5% PEG 3,350, 10% DMSO, 1 MM HU-10, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.91500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 390 O HOH A 391 1.92 REMARK 500 O PRO A 56 O HOH A 301 2.03 REMARK 500 O HOH A 368 O HOH A 441 2.06 REMARK 500 O HOH B 382 O HOH B 412 2.12 REMARK 500 OE1 GLU B 163 O HOH B 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 394 O HOH B 400 3545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 94 76.92 -118.23 REMARK 500 ASN B 140 -169.47 -105.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 447 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JQP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JQP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 DBREF 6MH1 A 44 168 UNP O60885 BRD4_HUMAN 44 168 DBREF 6MH1 B 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 6MH1 SER A 42 UNP O60885 EXPRESSION TAG SEQADV 6MH1 MET A 43 UNP O60885 EXPRESSION TAG SEQADV 6MH1 SER B 42 UNP O60885 EXPRESSION TAG SEQADV 6MH1 MET B 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU SEQRES 1 B 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 B 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 B 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 B 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 B 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 B 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 B 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 B 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 B 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 B 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU HET JQP A 201 60 HET EDO A 202 10 HET EDO A 203 10 HET JQP B 201 60 HET EDO B 202 10 HETNAM JQP N-(3,5-DIMETHYLPHENYL)-4-[4-(4-FLUOROPHENYL)-1- HETNAM 2 JQP (PIPERIDIN-4-YL)-1H-IMIDAZOL-5-YL]PYRIMIDIN-2-AMINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 JQP 2(C26 H27 F N6) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *289(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 ASN A 162 1 19 HELIX 8 AA8 THR B 60 VAL B 69 1 10 HELIX 9 AA9 VAL B 69 LYS B 76 1 8 HELIX 10 AB1 ALA B 80 GLN B 84 5 5 HELIX 11 AB2 ASP B 96 ILE B 101 1 6 HELIX 12 AB3 ASP B 106 ASN B 116 1 11 HELIX 13 AB4 ASN B 121 ASN B 140 1 20 HELIX 14 AB5 ASP B 144 GLU B 163 1 20 SITE 1 AC1 12 TRP A 81 PRO A 82 PHE A 83 LEU A 92 SITE 2 AC1 12 TYR A 97 MET A 132 ASN A 140 HOH A 316 SITE 3 AC1 12 HOH A 332 HOH A 368 HOH A 399 JQP B 201 SITE 1 AC2 7 ILE A 100 ILE A 101 LYS A 102 THR A 103 SITE 2 AC2 7 ASN A 135 ASN B 116 HOH B 313 SITE 1 AC3 5 ASN A 130 THR A 134 TYR A 137 GLU A 154 SITE 2 AC3 5 HOH B 306 SITE 1 AC4 16 ASP A 145 MET A 149 JQP A 201 TRP B 81 SITE 2 AC4 16 PRO B 82 PHE B 83 LEU B 92 TYR B 97 SITE 3 AC4 16 MET B 132 CYS B 136 ASN B 140 ILE B 146 SITE 4 AC4 16 HOH B 317 HOH B 372 HOH B 380 HOH B 393 SITE 1 AC5 5 ILE B 100 ILE B 101 LYS B 102 THR B 103 SITE 2 AC5 5 ASN B 135 CRYST1 41.830 59.510 111.420 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008975 0.00000