HEADER BIOSYNTHETIC PROTEIN 19-SEP-18 6MIC TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL HALF OF THE VIBRIO CHOLERAE MINOR TITLE 2 PILIN TCPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN CO-REGULATED PILUS BIOSYNTHESIS PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1; SOURCE 3 ORGANISM_TAXID: 345073; SOURCE 4 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 5 GENE: TCPB, VC0395_A0354; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS EFFECTOR DOMAIN, MINOR PILIN, TOXIN CO-REGULATED PILUS, VIBRIO KEYWDS 2 CHOLERAE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KOLAPPAN,L.CRAIG REVDAT 5 23-OCT-24 6MIC 1 REMARK REVDAT 4 11-OCT-23 6MIC 1 REMARK REVDAT 3 08-JAN-20 6MIC 1 REMARK REVDAT 2 13-NOV-19 6MIC 1 JRNL REVDAT 1 28-AUG-19 6MIC 0 JRNL AUTH M.GUTIERREZ-RODARTE,S.KOLAPPAN,B.A.BURRELL,L.CRAIG JRNL TITL THEVIBRIO CHOLERAEMINOR PILIN TCPB MEDIATES UPTAKE OF THE JRNL TITL 2 CHOLERA TOXIN PHAGE CTX PHI. JRNL REF J.BIOL.CHEM. V. 294 15698 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31471320 JRNL DOI 10.1074/JBC.RA119.009980 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 26883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3948 - 3.2980 0.91 2594 126 0.1859 0.2068 REMARK 3 2 3.2980 - 2.6178 0.97 2631 119 0.1829 0.2112 REMARK 3 3 2.6178 - 2.2870 0.93 2478 130 0.1742 0.1780 REMARK 3 4 2.2870 - 2.0779 0.99 2611 144 0.1669 0.1947 REMARK 3 5 2.0779 - 1.9290 0.92 2447 110 0.1692 0.1781 REMARK 3 6 1.9290 - 1.8152 0.98 2576 141 0.1722 0.1961 REMARK 3 7 1.8152 - 1.7243 0.99 2595 150 0.1775 0.1986 REMARK 3 8 1.7243 - 1.6493 0.93 2445 132 0.1835 0.2378 REMARK 3 9 1.6493 - 1.5858 0.99 2558 152 0.1718 0.1759 REMARK 3 10 1.5858 - 1.5310 0.99 2606 138 0.1822 0.1865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1261 REMARK 3 ANGLE : 0.991 1707 REMARK 3 CHIRALITY : 0.057 197 REMARK 3 PLANARITY : 0.006 218 REMARK 3 DIHEDRAL : 15.527 750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 25.6022 -13.0031 6.9252 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.0778 REMARK 3 T33: 0.0971 T12: -0.0002 REMARK 3 T13: -0.0062 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2693 L22: 0.2484 REMARK 3 L33: 0.1367 L12: -0.0168 REMARK 3 L13: 0.0009 L23: -0.1290 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.0057 S13: -0.0312 REMARK 3 S21: -0.0142 S22: 0.0155 S23: 0.0450 REMARK 3 S31: -0.0938 S32: -0.0564 S33: 0.0388 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MIC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RH COATED COLLIMATING MIRROR, K REMARK 200 -B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26889 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 78.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.09100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 12.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QS4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM CHLORIDE, SODIUM ACETATE, REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 31.64500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 18.27025 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 78.76367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 31.64500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 18.27025 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 78.76367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 31.64500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 18.27025 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.76367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 31.64500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 18.27025 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.76367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 31.64500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 18.27025 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.76367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 31.64500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 18.27025 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.76367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 36.54050 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 157.52733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 36.54050 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 157.52733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 36.54050 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 157.52733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 36.54050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 157.52733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 36.54050 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 157.52733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 36.54050 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 157.52733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 31.64500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -54.81075 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 63.29000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 685 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 716 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 734 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 HIS A 241 REMARK 465 MET A 242 REMARK 465 PHE A 243 REMARK 465 LEU A 244 REMARK 465 GLU A 245 REMARK 465 ASP A 246 REMARK 465 SER A 247 REMARK 465 GLU A 248 REMARK 465 LEU A 249 REMARK 465 CYS A 250 REMARK 465 TRP A 251 REMARK 465 ASP A 252 REMARK 465 THR A 253 REMARK 465 ALA A 254 REMARK 465 ALA A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 ALA A 258 REMARK 465 LYS A 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 261 175.77 66.29 REMARK 500 VAL A 269 95.44 -67.21 REMARK 500 ASN A 271 63.43 -154.75 REMARK 500 LYS A 286 -102.04 -90.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 DBREF1 6MIC A 243 423 UNP A0A0H3AKH0_VIBC3 DBREF2 6MIC A A0A0H3AKH0 250 430 SEQADV 6MIC GLY A 239 UNP A0A0H3AKH EXPRESSION TAG SEQADV 6MIC SER A 240 UNP A0A0H3AKH EXPRESSION TAG SEQADV 6MIC HIS A 241 UNP A0A0H3AKH EXPRESSION TAG SEQADV 6MIC MET A 242 UNP A0A0H3AKH EXPRESSION TAG SEQRES 1 A 185 GLY SER HIS MET PHE LEU GLU ASP SER GLU LEU CYS TRP SEQRES 2 A 185 ASP THR ALA ALA GLY SER ALA LYS SER CYS LEU SER VAL SEQRES 3 A 185 ARG TYR ASP THR VAL GLY ASN LYS THR GLU LEU ASP LEU SEQRES 4 A 185 LYS GLN ILE ASP VAL VAL SER ALA LYS GLY LEU SER PHE SEQRES 5 A 185 GLU SER ASP GLY LYS THR LYS THR PRO VAL VAL SER THR SEQRES 6 A 185 TYR GLU THR PHE GLN ASP GLY GLY ARG ALA LYS THR ILE SEQRES 7 A 185 ASN ALA ILE GLU CYS PRO THR GLY LEU ASN ASN ARG PHE SEQRES 8 A 185 ALA ALA VAL VAL SER SER PHE SER THR ALA GLY GLN ASN SEQRES 9 A 185 ALA ASN PHE SER SER GLU SER ALA LYS ASP SER GLN GLY SEQRES 10 A 185 THR THR GLN LYS ASP GLY SER LYS GLY PRO HIS ALA LEU SEQRES 11 A 185 LEU SER GLY ILE SER LEU ASN TRP THR LEU THR ASN LYS SEQRES 12 A 185 VAL TRP ASP VAL THR ALA SER ILE GLY ILE GLU SER GLY SEQRES 13 A 185 ILE LEU PRO THR SER GLY ILE ASP SER GLY SER LEU LEU SEQRES 14 A 185 ARG ASN PRO LYS SER LEU SER PHE ILE ALA PHE GLN TRP SEQRES 15 A 185 CYS GLU ASN HET MPD A 501 22 HET GOL A 502 14 HET GOL A 503 14 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MPD C6 H14 O2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *141(H2 O) SHEET 1 AA1 2 SER A 263 ASP A 267 0 SHEET 2 AA1 2 LYS A 272 ASP A 276 -1 O ASP A 276 N SER A 263 SHEET 1 AA2 2 PHE A 290 SER A 292 0 SHEET 2 AA2 2 LYS A 295 LYS A 297 -1 O LYS A 297 N PHE A 290 SHEET 1 AA3 3 VAL A 301 GLU A 305 0 SHEET 2 AA3 3 LEU A 413 GLU A 422 -1 O ALA A 417 N THR A 303 SHEET 3 AA3 3 ASN A 326 PHE A 336 -1 N ASN A 326 O GLU A 422 SHEET 1 AA4 3 LYS A 314 ASN A 317 0 SHEET 2 AA4 3 VAL A 382 ILE A 391 -1 O TRP A 383 N ILE A 316 SHEET 3 AA4 3 LEU A 369 THR A 379 -1 N THR A 377 O ASP A 384 SHEET 1 AA5 4 LYS A 314 ASN A 317 0 SHEET 2 AA5 4 VAL A 382 ILE A 391 -1 O TRP A 383 N ILE A 316 SHEET 3 AA5 4 LEU A 406 ARG A 408 -1 O LEU A 407 N ILE A 389 SHEET 4 AA5 4 ASP A 402 SER A 403 -1 N SER A 403 O LEU A 406 SHEET 1 AA6 2 ALA A 343 ASN A 344 0 SHEET 2 AA6 2 ASP A 352 SER A 353 -1 O ASP A 352 N ASN A 344 SSBOND 1 CYS A 321 CYS A 421 1555 1555 2.05 SITE 1 AC1 6 HIS A 366 SER A 370 GLY A 371 SER A 388 SITE 2 AC1 6 LEU A 406 HOH A 667 SITE 1 AC2 2 THR A 296 HOH A 707 SITE 1 AC3 10 SER A 292 ASP A 293 LYS A 295 LYS A 297 SITE 2 AC3 10 VAL A 301 SER A 302 THR A 303 ILE A 319 SITE 3 AC3 10 HOH A 601 HOH A 654 CRYST1 63.290 63.290 236.291 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015800 0.009122 0.000000 0.00000 SCALE2 0.000000 0.018245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004232 0.00000