HEADER BIOSYNTHETIC PROTEIN 20-SEP-18 6MJG TITLE STRUCTURE OF DBOPHMA IN COMPLEX WITH SAH AND METHYLATED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN OF DBOPHMA AND METHYLATED PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MISMATCHES ARE METHYLATED VALINE, METHYLATED COMPND 6 ISOLEUCINE, METHYLATED GLYCINE. THE ENZYME HAS A PEPTIDE SEQUENCE AT COMPND 7 THE C-TERMINUS THAT IS NOT METHYLATED UNTIL IT IS RECOMBINANTLY COMPND 8 EXPRESSED (SEQUENCE VISSVVA) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENDROTHELE BISPORA CBS 962.96; SOURCE 3 ORGANISM_TAXID: 1314807; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, BOROSIN, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.ONGPIPATTANAKUL,S.K.NAIR REVDAT 4 13-NOV-24 6MJG 1 LINK REVDAT 3 01-JAN-20 6MJG 1 REMARK REVDAT 2 31-OCT-18 6MJG 1 JRNL REVDAT 1 03-OCT-18 6MJG 0 JRNL AUTH C.ONGPIPATTANAKUL,S.K.NAIR JRNL TITL MOLECULAR BASIS FOR AUTOCATALYTIC BACKBONE N-METHYLATION IN JRNL TITL 2 RIPP NATURAL PRODUCT BIOSYNTHESIS. JRNL REF ACS CHEM. BIOL. V. 13 2989 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 30204409 JRNL DOI 10.1021/ACSCHEMBIO.8B00668 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 23975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1636 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.72000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3095 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4214 ; 1.529 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 6.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;35.992 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;16.177 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.134 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2364 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1545 ; 2.024 ; 4.023 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1926 ; 3.066 ; 6.029 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1549 ; 2.866 ; 4.241 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4716 ; 5.912 ;56.083 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6MJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 A REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.123 REMARK 200 RESOLUTION RANGE LOW (A) : 75.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MM SAH MIXED 0.24 OR 0.26 M NAF, 26% REMARK 280 PEG3350, AND 0.1 M BIS-TRIS PROPANE AT PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 282.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.20400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.98750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.20400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.98750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.67000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.20400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.98750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.67000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.20400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.98750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 ASN A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLU A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 SER A 395 REMARK 465 GLN A 396 REMARK 465 SER A 397 REMARK 465 VAL A 398 REMARK 465 GLU A 399 REMARK 465 GLU A 400 REMARK 465 ALA A 401 REMARK 465 SER A 402 REMARK 465 MET A 403 REMARK 465 ASN A 404 REMARK 465 GLY A 405 REMARK 465 PHE A 406 REMARK 465 PRO A 407 REMARK 465 TRP A 408 REMARK 465 VAL A 409 REMARK 465 ILE A 410 REMARK 465 VAL A 411 REMARK 465 THR A 412 REMARK 465 GLY A 413 REMARK 465 ILE A 414 REMARK 465 VAL A 415 REMARK 465 GLY A 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 607 O HOH A 607 4555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 21 -57.14 66.70 REMARK 500 ASN A 57 75.04 -116.16 REMARK 500 CYS A 138 66.46 25.04 REMARK 500 CYS A 174 50.30 -142.73 REMARK 500 ALA A 318 81.21 -150.03 REMARK 500 THR A 319 -161.64 -123.64 REMARK 500 ASP A 343 97.39 -163.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 273 OD1 REMARK 620 2 ASP A 273 OD1 0.0 REMARK 620 3 HIS A 275 ND1 89.2 89.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA A 417 and IML A REMARK 800 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues IML A 418 and SAR A REMARK 800 419 DBREF 6MJG A -3 416 PDB 6MJG 6MJG -3 416 DBREF 6MJG A 417 425 PDB 6MJG 6MJG 417 425 SEQRES 1 A 420 SER ASN ALA MET GLU SER SER THR GLN THR LYS PRO GLY SEQRES 2 A 420 SER LEU ILE VAL VAL GLY THR GLY ILE GLU SER ILE GLY SEQRES 3 A 420 GLN MET THR LEU GLN ALA LEU SER TYR ILE GLU ALA ALA SEQRES 4 A 420 SER LYS VAL PHE TYR CYS VAL ILE ASP PRO ALA THR GLU SEQRES 5 A 420 ALA PHE ILE LEU THR LYS ASN LYS ASN CYS VAL ASP LEU SEQRES 6 A 420 TYR GLN TYR TYR ASP ASN GLY LYS SER ARG MET ASP THR SEQRES 7 A 420 TYR THR GLN MET ALA GLU LEU MET LEU LYS GLU VAL ARG SEQRES 8 A 420 ASN GLY LEU ASP VAL VAL GLY VAL PHE TYR GLY HIS PRO SEQRES 9 A 420 GLY VAL PHE VAL ASN PRO SER HIS ARG ALA LEU ALA ILE SEQRES 10 A 420 ALA ARG SER GLU GLY TYR GLN ALA ARG MET LEU PRO GLY SEQRES 11 A 420 VAL SER ALA GLU ASP CYS LEU PHE ALA ASP LEU CYS ILE SEQRES 12 A 420 ASP PRO SER ASN PRO GLY CYS LEU THR TYR GLU ALA SER SEQRES 13 A 420 ASP PHE LEU ILE ARG GLU ARG PRO VAL ASN VAL HIS SER SEQRES 14 A 420 HIS LEU ILE LEU PHE GLN VAL GLY CYS VAL GLY ILE ALA SEQRES 15 A 420 ASP PHE ASN PHE SER GLY PHE ASP ASN SER LYS PHE THR SEQRES 16 A 420 ILE LEU VAL ASP ARG LEU GLU GLN GLU TYR GLY PRO ASP SEQRES 17 A 420 HIS THR VAL VAL HIS TYR ILE ALA ALA MET MET PRO HIS SEQRES 18 A 420 GLN ASP PRO VAL THR ASP LYS PHE THR ILE GLY GLN LEU SEQRES 19 A 420 ARG GLU PRO GLU ILE ALA LYS ARG VAL GLY GLY VAL SER SEQRES 20 A 420 THR PHE TYR ILE PRO PRO LYS ALA ARG LYS ASP ILE ASN SEQRES 21 A 420 THR ASP ILE ILE ARG LEU LEU GLU PHE LEU PRO ALA GLY SEQRES 22 A 420 LYS VAL PRO ASP LYS HIS THR GLN ILE TYR PRO PRO ASN SEQRES 23 A 420 GLN TRP GLU PRO ASP VAL PRO THR LEU PRO PRO TYR GLY SEQRES 24 A 420 GLN ASN GLU GLN ALA ALA ILE THR ARG LEU GLU ALA HIS SEQRES 25 A 420 ALA PRO PRO GLU GLU TYR GLN PRO LEU ALA THR SER LYS SEQRES 26 A 420 ALA MET THR ASP VAL MET THR LYS LEU ALA LEU ASP PRO SEQRES 27 A 420 LYS ALA LEU ALA GLU TYR LYS ALA ASP HIS ARG ALA PHE SEQRES 28 A 420 ALA GLN SER VAL PRO ASP LEU THR PRO GLN GLU ARG ALA SEQRES 29 A 420 ALA LEU GLU LEU GLY ASP SER TRP ALA ILE ARG CYS ALA SEQRES 30 A 420 MET LYS ASN MET PRO SER SER LEU LEU GLU ALA ALA SER SEQRES 31 A 420 GLN SER VAL GLU GLU ALA SER MET ASN GLY PHE PRO TRP SEQRES 32 A 420 VAL ILE VAL THR GLY ILE VAL GLY MVA IML SAR SER MVA SEQRES 33 A 420 VAL SER SER ALA HET MVA A 417 8 HET IML A 418 9 HET SAR A 419 5 HET MVA A 421 8 HET SAH A 500 26 HET ZN A 501 1 HETNAM MVA N-METHYLVALINE HETNAM IML N-METHYL-ISOLEUCINE HETNAM SAR SARCOSINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ZN ZINC ION FORMUL 1 MVA 2(C6 H13 N O2) FORMUL 1 IML C7 H15 N O2 FORMUL 1 SAR C3 H7 N O2 FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *187(H2 O) HELIX 1 AA1 THR A 25 ALA A 35 1 11 HELIX 2 AA2 ASP A 44 ASN A 55 1 12 HELIX 3 AA3 TYR A 62 TYR A 65 5 4 HELIX 4 AA4 SER A 70 ASN A 88 1 19 HELIX 5 AA5 VAL A 104 GLU A 117 1 14 HELIX 6 AA6 SER A 128 LEU A 137 1 10 HELIX 7 AA7 ALA A 151 ARG A 157 1 7 HELIX 8 AA8 GLN A 171 VAL A 175 5 5 HELIX 9 AA9 LYS A 189 GLY A 202 1 14 HELIX 10 AB1 GLY A 228 ARG A 231 5 4 HELIX 11 AB2 GLU A 232 LYS A 237 1 6 HELIX 12 AB3 ASN A 256 GLU A 264 1 9 HELIX 13 AB4 GLY A 295 HIS A 308 1 14 HELIX 14 AB5 SER A 320 ASP A 333 1 14 HELIX 15 AB6 ASP A 333 ASP A 343 1 11 HELIX 16 AB7 ASP A 343 VAL A 351 1 9 HELIX 17 AB8 THR A 355 GLY A 365 1 11 HELIX 18 AB9 ASP A 366 MET A 374 1 9 HELIX 19 AC1 SER A 380 ALA A 385 1 6 SHEET 1 AA1 5 CYS A 58 ASP A 60 0 SHEET 2 AA1 5 LYS A 37 CYS A 41 1 N VAL A 38 O VAL A 59 SHEET 3 AA1 5 ASP A 91 PHE A 96 1 O VAL A 95 N PHE A 39 SHEET 4 AA1 5 SER A 10 GLY A 15 1 N VAL A 14 O GLY A 94 SHEET 5 AA1 5 GLN A 120 MET A 123 1 O GLN A 120 N LEU A 11 SHEET 1 AA2 5 CYS A 146 GLU A 150 0 SHEET 2 AA2 5 HIS A 166 PHE A 170 1 O ILE A 168 N LEU A 147 SHEET 3 AA2 5 THR A 244 ILE A 247 -1 O ILE A 247 N LEU A 167 SHEET 4 AA2 5 THR A 206 ILE A 211 -1 N VAL A 208 O TYR A 246 SHEET 5 AA2 5 VAL A 221 THR A 226 -1 O PHE A 225 N VAL A 207 LINK C MVA A 417 N IML A 418 1555 1555 1.34 LINK C IML A 418 N SAR A 419 1555 1555 1.34 LINK C SAR A 419 N SER A 420 1555 1555 1.33 LINK C SER A 420 N MVA A 421 1555 1555 1.34 LINK C MVA A 421 N VAL A 422 1555 1555 1.34 LINK OD1 ASP A 273 ZN ZN A 501 1555 1555 2.52 LINK OD1 ASP A 273 ZN ZN A 501 1555 3654 2.53 LINK ND1 HIS A 275 ZN ZN A 501 1555 3654 2.00 CISPEP 1 ASN A 143 PRO A 144 0 14.61 CISPEP 2 TYR A 279 PRO A 280 0 7.57 SITE 1 AC1 23 ILE A 18 TYR A 97 GLY A 98 HIS A 99 SITE 2 AC1 23 VAL A 102 PHE A 103 VAL A 104 SER A 128 SITE 3 AC1 23 ALA A 129 PHE A 170 GLN A 171 TYR A 210 SITE 4 AC1 23 ILE A 211 ALA A 212 MET A 214 GLY A 241 SITE 5 AC1 23 VAL A 242 SER A 243 THR A 244 SAR A 419 SITE 6 AC1 23 MVA A 421 HOH A 638 HOH A 669 SITE 1 AC2 2 ASP A 273 HIS A 275 SITE 1 AC3 8 TYR A 62 ASN A 181 PHE A 182 GLY A 184 SITE 2 AC3 8 PHE A 185 ARG A 371 SAR A 419 SER A 420 SITE 1 AC4 12 ILE A 43 TYR A 62 TYR A 97 ASN A 181 SITE 2 AC4 12 PHE A 182 GLY A 184 PHE A 185 GLY A 241 SITE 3 AC4 12 MVA A 417 SER A 420 MVA A 421 SAH A 500 CRYST1 106.408 107.975 79.340 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012604 0.00000