HEADER IMMUNE SYSTEM 21-SEP-18 6MJO TITLE CRYSTAL STRUCTURE OF RHESUS MACAQUE (MACACA MULATTA) FC-GAMMA RECEPTOR TITLE 2 III COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW AFFINITY IMMUNOGLOBULIN GAMMA FC REGION RECEPTOR III; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: IGG FC RECEPTOR III,FC-GAMMA RIII,FCRIII; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MACAQUE; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 GENE: FCGR3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL: HEK 293 CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS IMMUNE SYSTEM, FC GAMMA RECEPTOR III EXPDTA X-RAY DIFFRACTION AUTHOR V.VAN,W.D.TOLBERT,M.PAZGIER REVDAT 5 18-OCT-23 6MJO 1 REMARK REVDAT 4 26-OCT-22 6MJO 1 JRNL HETSYN LINK REVDAT 3 29-JUL-20 6MJO 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 18-DEC-19 6MJO 1 REMARK REVDAT 1 13-NOV-19 6MJO 0 JRNL AUTH W.D.TOLBERT,N.GOHAIN,P.G.KREMER,A.P.HEDERMAN,D.N.NGUYEN, JRNL AUTH 2 V.VAN,R.SHERBURN,G.K.LEWIS,A.FINZI,J.POLLARA,M.E.ACKERMAN, JRNL AUTH 3 A.W.BARB,M.PAZGIER JRNL TITL DECODING HUMAN-MACAQUE INTERSPECIES DIFFERENCES IN JRNL TITL 2 FC-EFFECTOR FUNCTIONS: THE STRUCTURAL BASIS FOR JRNL TITL 3 CD16-DEPENDENT EFFECTOR FUNCTION IN RHESUS MACAQUES. JRNL REF FRONT IMMUNOL V. 13 60411 2022 JRNL REFN ESSN 1664-3224 JRNL PMID 36131913 JRNL DOI 10.3389/FIMMU.2022.960411 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 17763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9947 - 3.4480 1.00 2964 164 0.1590 0.1873 REMARK 3 2 3.4480 - 2.7371 1.00 2871 121 0.1894 0.2463 REMARK 3 3 2.7371 - 2.3912 1.00 2810 152 0.2096 0.2593 REMARK 3 4 2.3912 - 2.1727 1.00 2800 141 0.1991 0.2468 REMARK 3 5 2.1727 - 2.0169 0.99 2803 119 0.2186 0.2553 REMARK 3 6 2.0169 - 1.8980 0.97 2701 117 0.2514 0.3027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1558 REMARK 3 ANGLE : 1.636 2133 REMARK 3 CHIRALITY : 0.091 257 REMARK 3 PLANARITY : 0.007 254 REMARK 3 DIHEDRAL : 16.690 934 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1E4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350 0.1M HEPES PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.53650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.84550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.84550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.53650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 0 REMARK 465 ARG C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 ASP C 175 REMARK 465 LEU C 176 REMARK 465 ALA C 177 REMARK 465 VAL C 178 REMARK 465 SER C 179 REMARK 465 SER C 180 REMARK 465 ILE C 181 REMARK 465 SER C 182 REMARK 465 SER C 183 REMARK 465 PHE C 184 REMARK 465 PHE C 185 REMARK 465 PRO C 186 REMARK 465 PRO C 187 REMARK 465 GLY C 188 REMARK 465 TYR C 189 REMARK 465 GLN C 190 REMARK 465 VAL C 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 22 -1.07 81.69 REMARK 500 GLU C 103 -9.35 74.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 6MJO C 0 191 UNP A3RFZ7 FCGR3_MACMU 18 209 SEQADV 6MJO GLN C 38 UNP A3RFZ7 ASN 56 ENGINEERED MUTATION SEQADV 6MJO GLN C 169 UNP A3RFZ7 ASN 187 ENGINEERED MUTATION SEQRES 1 C 192 MET ARG ALA GLU ASP LEU PRO LYS ALA VAL VAL PHE LEU SEQRES 2 C 192 GLU PRO GLN TRP TYR ARG VAL LEU GLU LYS ASP SER VAL SEQRES 3 C 192 THR LEU LYS CYS GLN GLY ALA TYR SER PRO GLU ASP GLN SEQRES 4 C 192 SER THR ARG TRP PHE HIS ASN GLU SER LEU ILE SER SER SEQRES 5 C 192 GLN THR SER SER TYR PHE ILE ALA ALA ALA ARG VAL ASN SEQRES 6 C 192 ASN SER GLY GLU TYR ARG CYS GLN THR SER LEU SER THR SEQRES 7 C 192 LEU SER ASP PRO VAL GLN LEU GLU VAL HIS ILE GLY TRP SEQRES 8 C 192 LEU LEU LEU GLN ALA PRO ARG TRP VAL PHE LYS GLU GLU SEQRES 9 C 192 GLU SER ILE HIS LEU ARG CYS HIS SER TRP LYS ASN THR SEQRES 10 C 192 LEU LEU HIS LYS VAL THR TYR LEU GLN ASN GLY LYS GLY SEQRES 11 C 192 ARG LYS TYR PHE HIS GLN ASN SER ASP PHE TYR ILE PRO SEQRES 12 C 192 LYS ALA THR LEU LYS ASP SER GLY SER TYR PHE CYS ARG SEQRES 13 C 192 GLY LEU ILE GLY SER LYS ASN VAL SER SER GLU THR VAL SEQRES 14 C 192 GLN ILE THR ILE THR GLN ASP LEU ALA VAL SER SER ILE SEQRES 15 C 192 SER SER PHE PHE PRO PRO GLY TYR GLN VAL HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET MAN A 6 11 HET MAN A 7 11 HET NAG C 208 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 4(C6 H12 O6) FORMUL 4 HOH *87(H2 O) HELIX 1 AA1 ARG C 62 SER C 66 5 5 HELIX 2 AA2 LYS C 114 THR C 116 5 3 HELIX 3 AA3 THR C 145 SER C 149 5 5 SHEET 1 AA1 3 VAL C 9 GLU C 13 0 SHEET 2 AA1 3 VAL C 25 GLN C 30 -1 O LYS C 28 N PHE C 11 SHEET 3 AA1 3 SER C 55 ILE C 58 -1 O ILE C 58 N VAL C 25 SHEET 1 AA2 5 ARG C 18 LEU C 20 0 SHEET 2 AA2 5 VAL C 82 HIS C 87 1 O HIS C 87 N VAL C 19 SHEET 3 AA2 5 GLY C 67 THR C 73 -1 N TYR C 69 O VAL C 82 SHEET 4 AA2 5 THR C 40 HIS C 44 -1 N PHE C 43 O ARG C 70 SHEET 5 AA2 5 SER C 47 LEU C 48 -1 O SER C 47 N HIS C 44 SHEET 1 AA3 3 LEU C 91 GLN C 94 0 SHEET 2 AA3 3 ILE C 106 SER C 112 -1 O ARG C 109 N GLN C 94 SHEET 3 AA3 3 PHE C 139 ILE C 141 -1 O PHE C 139 N LEU C 108 SHEET 1 AA4 5 VAL C 99 LYS C 101 0 SHEET 2 AA4 5 VAL C 168 THR C 173 1 O THR C 171 N PHE C 100 SHEET 3 AA4 5 GLY C 150 ILE C 158 -1 N TYR C 152 O VAL C 168 SHEET 4 AA4 5 LEU C 118 GLN C 125 -1 N LEU C 124 O PHE C 153 SHEET 5 AA4 5 LYS C 128 GLN C 135 -1 O ARG C 130 N TYR C 123 SHEET 1 AA5 4 VAL C 99 LYS C 101 0 SHEET 2 AA5 4 VAL C 168 THR C 173 1 O THR C 171 N PHE C 100 SHEET 3 AA5 4 GLY C 150 ILE C 158 -1 N TYR C 152 O VAL C 168 SHEET 4 AA5 4 LYS C 161 SER C 164 -1 O VAL C 163 N GLY C 156 SSBOND 1 CYS C 29 CYS C 71 1555 1555 2.14 SSBOND 2 CYS C 110 CYS C 154 1555 1555 2.14 LINK ND2 ASN C 45 C1 NAG A 1 1555 1555 1.45 LINK ND2AASN C 64 C1 ANAG C 208 1555 1555 1.39 LINK ND2BASN C 64 C1 BNAG C 208 1555 1555 1.41 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.42 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.44 LINK O6 BMA A 3 C1 MAN A 4 1555 1555 1.44 LINK O3 BMA A 3 C1 MAN A 7 1555 1555 1.44 LINK O3 MAN A 4 C1 MAN A 5 1555 1555 1.45 LINK O6 MAN A 4 C1 MAN A 6 1555 1555 1.44 CISPEP 1 GLU C 13 PRO C 14 0 -5.14 CRYST1 49.073 63.960 69.691 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014349 0.00000