HEADER PROTEIN BINDING/ANTIBIOTIC 25-SEP-18 6MKF TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 5 (PBP5) FROM TITLE 2 ENTEROCOCCUS FAECIUM IN THE IMIPENEM-BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN 5 (PBP5); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 3 ORGANISM_TAXID: 1352; SOURCE 4 GENE: PBP5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSPEPTIDASE, PBP, PENICILLIN-BINDING PROTEIN, PROTEIN BINDING- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.M.MOON,C.LEE,E.D.D'ANDREA,W.PETI,R.PAGE REVDAT 5 03-APR-24 6MKF 1 COMPND HETNAM REVDAT 4 18-DEC-19 6MKF 1 LINK REVDAT 3 19-DEC-18 6MKF 1 JRNL REVDAT 2 07-NOV-18 6MKF 1 JRNL REVDAT 1 31-OCT-18 6MKF 0 JRNL AUTH T.M.MOON,E.D.D'ANDREA,C.W.LEE,A.SOARES,J.JAKONCIC, JRNL AUTH 2 C.DESBONNET,M.GARCIA-SOLACHE,L.B.RICE,R.PAGE,W.PETI JRNL TITL THE STRUCTURES OF PENICILLIN-BINDING PROTEIN 4 (PBP4) AND JRNL TITL 2 PBP5 FROMENTEROCOCCIPROVIDE STRUCTURAL INSIGHTS INTO JRNL TITL 3 BETA-LACTAM RESISTANCE. JRNL REF J. BIOL. CHEM. V. 293 18574 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30355734 JRNL DOI 10.1074/JBC.RA118.006052 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8463 - 6.8790 1.00 2935 141 0.1471 0.1641 REMARK 3 2 6.8790 - 5.4711 1.00 2788 126 0.1637 0.1642 REMARK 3 3 5.4711 - 4.7827 1.00 2713 150 0.1385 0.1554 REMARK 3 4 4.7827 - 4.3469 1.00 2720 133 0.1333 0.1443 REMARK 3 5 4.3469 - 4.0361 1.00 2692 145 0.1393 0.1913 REMARK 3 6 4.0361 - 3.7986 1.00 2701 119 0.1560 0.1951 REMARK 3 7 3.7986 - 3.6087 1.00 2682 131 0.1670 0.1905 REMARK 3 8 3.6087 - 3.4519 1.00 2660 141 0.1777 0.2104 REMARK 3 9 3.4519 - 3.3192 1.00 2683 126 0.2013 0.2599 REMARK 3 10 3.3192 - 3.2048 1.00 2656 146 0.2143 0.2451 REMARK 3 11 3.2048 - 3.1047 1.00 2625 146 0.2641 0.2989 REMARK 3 12 3.1047 - 3.0160 1.00 2623 173 0.2658 0.2839 REMARK 3 13 3.0160 - 2.9367 1.00 2658 133 0.2711 0.3065 REMARK 3 14 2.9367 - 2.8651 0.99 2623 146 0.3021 0.3540 REMARK 3 15 2.8651 - 2.8000 0.97 2528 152 0.3240 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4943 REMARK 3 ANGLE : 0.494 6714 REMARK 3 CHIRALITY : 0.040 762 REMARK 3 PLANARITY : 0.003 872 REMARK 3 DIHEDRAL : 16.434 2970 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED SI REMARK 200 (111) REMARK 200 OPTICS : ADJUSTABLE FOCUS K-B PAIR SI REMARK 200 PLUS PT, RH COATINGS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42442 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PBP5 APO OPEN REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISODIUM CITRATE, 2 M AMMONIUM REMARK 280 SULFATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.93000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.93000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.93000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.93000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.93000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 36 REMARK 465 HIS A 37 REMARK 465 MET A 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 108 CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 142 CG OD1 OD2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ASP A 261 CG OD1 OD2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 GLU A 625 CG CD OE1 OE2 REMARK 470 LYS A 626 CG CD CE NZ REMARK 470 GLN A 627 CG CD OE1 NE2 REMARK 470 VAL A 629 CG1 CG2 REMARK 470 LYS A 630 CG CD CE NZ REMARK 470 LYS A 632 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 422 O7 IM2 A 701 1.97 REMARK 500 O LYS A 630 O HOH A 801 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -125.54 -117.46 REMARK 500 ASP A 107 -165.09 -122.47 REMARK 500 LYS A 109 -73.44 -101.83 REMARK 500 ASP A 110 -164.97 -102.07 REMARK 500 ASN A 141 -81.20 -104.78 REMARK 500 ASP A 142 -119.90 -86.84 REMARK 500 ASN A 148 90.99 -69.31 REMARK 500 VAL A 154 -60.11 -93.69 REMARK 500 GLU A 157 38.72 74.67 REMARK 500 LEU A 241 -59.51 -121.90 REMARK 500 PRO A 249 -165.36 -73.37 REMARK 500 ASP A 325 -70.20 -63.34 REMARK 500 GLN A 408 77.44 55.99 REMARK 500 SER A 480 74.93 56.11 REMARK 500 PHE A 504 -144.47 -91.98 REMARK 500 PRO A 513 41.49 -79.23 REMARK 500 GLN A 540 -131.10 -107.79 REMARK 500 ASN A 559 28.08 -140.19 REMARK 500 ILE A 623 -155.87 -137.31 REMARK 500 LYS A 624 149.08 70.45 REMARK 500 GLU A 625 -45.93 -152.50 REMARK 500 GLN A 627 -99.45 -136.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IM2 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 716 DBREF1 6MKF A 39 678 UNP A0A075Q0W3_ENTFC DBREF2 6MKF A A0A075Q0W3 39 678 SEQADV 6MKF GLY A 36 UNP A0A075Q0W EXPRESSION TAG SEQADV 6MKF HIS A 37 UNP A0A075Q0W EXPRESSION TAG SEQADV 6MKF MET A 38 UNP A0A075Q0W EXPRESSION TAG SEQRES 1 A 643 GLY HIS MET THR GLN ALA VAL GLU ALA GLY GLU LYS THR SEQRES 2 A 643 VAL GLU GLN PHE VAL GLN ALA LEU ASN LYS GLY ASP TYR SEQRES 3 A 643 ASN LYS ALA ALA GLU MET THR SER LYS LYS ALA ALA ASN SEQRES 4 A 643 LYS SER ALA LEU SER GLU LYS GLU ILE LEU ASP LYS TYR SEQRES 5 A 643 GLN ASN ILE TYR GLY ALA ALA ASP VAL LYS GLY LEU GLN SEQRES 6 A 643 ILE SER ASN LEU LYS VAL ASP LYS LYS ASP ASP SER THR SEQRES 7 A 643 TYR SER PHE SER TYR LYS ALA LYS MET ASN THR SER LEU SEQRES 8 A 643 GLY GLU LEU LYS ASP LEU SER TYR LYS GLY THR LEU ASP SEQRES 9 A 643 ARG ASN ASP GLY GLN THR THR ILE ASN TRP GLN PRO ASN SEQRES 10 A 643 LEU VAL PHE PRO GLU MET GLU GLY ASN ASP LYS VAL SER SEQRES 11 A 643 LEU THR THR GLN GLU ALA ALA ARG GLY ASN ILE ILE ASP SEQRES 12 A 643 ARG ASN GLY GLU PRO LEU ALA THR THR GLY LYS LEU LYS SEQRES 13 A 643 GLN LEU GLY VAL VAL PRO SER LYS LEU GLY ASP GLY GLY SEQRES 14 A 643 GLU LYS THR ALA ASN ILE LYS ALA ILE ALA SER SER PHE SEQRES 15 A 643 ASP LEU THR GLU ASP ALA ILE ASN GLN ALA ILE SER GLN SEQRES 16 A 643 SER TRP VAL GLN PRO ASP TYR PHE VAL PRO LEU LYS ILE SEQRES 17 A 643 ILE ASP GLY ALA THR PRO GLU LEU PRO ALA GLY ALA THR SEQRES 18 A 643 ILE GLN GLU VAL ASP GLY ARG TYR TYR PRO LEU GLY GLU SEQRES 19 A 643 ALA ALA ALA GLN LEU ILE GLY TYR VAL GLY ASP ILE THR SEQRES 20 A 643 ALA GLU ASP ILE ASP LYS ASN PRO GLU LEU SER SER ASN SEQRES 21 A 643 GLY LYS ILE GLY ARG SER GLY LEU GLU MET ALA PHE ASP SEQRES 22 A 643 LYS ASP LEU ARG GLY THR THR GLY GLY LYS LEU SER ILE SEQRES 23 A 643 THR ASP ALA ASP GLY VAL GLU LYS LYS VAL LEU ILE GLU SEQRES 24 A 643 HIS GLU VAL GLN ASN GLY LYS ASP ILE LYS LEU THR ILE SEQRES 25 A 643 ASP ALA LYS ALA GLN LYS THR ALA PHE ASP SER LEU GLY SEQRES 26 A 643 GLY LYS ALA GLY SER THR VAL ALA THR THR PRO LYS THR SEQRES 27 A 643 GLY ASP LEU LEU ALA LEU ALA SER SER PRO SER TYR ASP SEQRES 28 A 643 PRO ASN LYS MET THR ASN GLY ILE SER GLN GLU ASP TYR SEQRES 29 A 643 LYS ALA TYR GLU GLU ASN PRO GLU GLN PRO PHE ILE SER SEQRES 30 A 643 ARG PHE ALA THR GLY TYR ALA PRO GLY SER THR PHE LYS SEQRES 31 A 643 MET ILE THR ALA ALA ILE GLY LEU ASP ASN GLY THR ILE SEQRES 32 A 643 ASP PRO ASN GLU VAL LEU THR ILE ASN GLY LEU LYS TRP SEQRES 33 A 643 GLN LYS ASP SER SER TRP GLY SER TYR GLN VAL THR ARG SEQRES 34 A 643 VAL SER ASP VAL SER GLN VAL ASP LEU LYS THR ALA LEU SEQRES 35 A 643 ILE TYR SER ASP ASN ILE TYR THR ALA GLN GLU THR LEU SEQRES 36 A 643 LYS MET GLY GLU LYS LYS PHE ARG THR GLY LEU ASP LYS SEQRES 37 A 643 PHE ILE PHE GLY GLU ASP LEU ASP LEU PRO ILE SER MET SEQRES 38 A 643 ASN PRO ALA GLN ILE SER ASN GLU ASP SER PHE ASN SER SEQRES 39 A 643 ASP ILE LEU LEU ALA ASP THR GLY TYR GLY GLN GLY GLU SEQRES 40 A 643 LEU LEU ILE ASN PRO ILE GLN GLN ALA ALA MET TYR SER SEQRES 41 A 643 VAL PHE ALA ASN ASN GLY THR LEU VAL TYR PRO LYS LEU SEQRES 42 A 643 ILE ALA ASP LYS GLU THR LYS ASP LYS LYS ASN VAL ILE SEQRES 43 A 643 GLY GLU THR ALA VAL GLN THR ILE VAL PRO ASP LEU ARG SEQRES 44 A 643 GLU VAL VAL GLN ASP VAL ASN GLY THR ALA HIS SER LEU SEQRES 45 A 643 SER ALA LEU GLY ILE PRO LEU ALA ALA LYS THR GLY THR SEQRES 46 A 643 ALA GLU ILE LYS GLU LYS GLN ASP VAL LYS GLY LYS GLU SEQRES 47 A 643 ASN SER PHE LEU PHE ALA PHE ASN PRO ASP ASN GLN GLY SEQRES 48 A 643 TYR MET MET VAL SER MET LEU GLU ASN LYS GLU ASP ASP SEQRES 49 A 643 ASP SER ALA THR LYS ARG ALA SER GLU LEU LEU GLN TYR SEQRES 50 A 643 LEU ASN GLN ASN TYR GLN HET IM2 A 701 20 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET SO4 A 708 5 HET SO4 A 709 5 HET SO4 A 710 5 HET SO4 A 711 5 HET SO4 A 712 5 HET SO4 A 713 5 HET SO4 A 714 5 HET SO4 A 715 5 HET SO4 A 716 5 HETNAM IM2 (5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)- HETNAM 2 IM2 IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H- HETNAM 3 IM2 PYRROLE-2-CARBOX YLIC ACID HETNAM SO4 SULFATE ION HETSYN IM2 IMIPENEM, OPEN FORM; N-FORMIMIDOYL-THIENAMYCINE, OPEN HETSYN 2 IM2 FORM FORMUL 2 IM2 C12 H19 N3 O4 S FORMUL 3 SO4 15(O4 S 2-) FORMUL 18 HOH *164(H2 O) HELIX 1 AA1 THR A 39 GLY A 59 1 21 HELIX 2 AA2 ASP A 60 GLU A 66 1 7 HELIX 3 AA3 SER A 79 ALA A 94 1 16 HELIX 4 AA4 GLN A 150 VAL A 154 5 5 HELIX 5 AA5 VAL A 196 GLY A 201 1 6 HELIX 6 AA6 GLY A 203 PHE A 217 1 15 HELIX 7 AA7 THR A 220 SER A 229 1 10 HELIX 8 AA8 LEU A 267 ALA A 270 5 4 HELIX 9 AA9 ALA A 271 GLY A 276 1 6 HELIX 10 AB1 THR A 282 ASN A 289 1 8 HELIX 11 AB2 SER A 301 PHE A 307 1 7 HELIX 12 AB3 PHE A 307 GLY A 313 1 7 HELIX 13 AB4 ASP A 348 LEU A 359 1 12 HELIX 14 AB5 ASP A 386 ASN A 392 1 7 HELIX 15 AB6 SER A 395 ASN A 405 1 11 HELIX 16 AB7 SER A 412 THR A 416 5 5 HELIX 17 AB8 PRO A 420 THR A 423 5 4 HELIX 18 AB9 PHE A 424 ASN A 435 1 12 HELIX 19 AC1 ASP A 454 GLY A 458 5 5 HELIX 20 AC2 ASP A 472 SER A 480 1 9 HELIX 21 AC3 ASP A 481 GLY A 493 1 13 HELIX 22 AC4 GLY A 493 LYS A 503 1 11 HELIX 23 AC5 SER A 529 TYR A 538 1 10 HELIX 24 AC6 ASN A 546 SER A 555 1 10 HELIX 25 AC7 VAL A 556 ASN A 559 5 4 HELIX 26 AC8 GLY A 582 ASP A 599 1 18 HELIX 27 AC9 ALA A 604 GLY A 611 5 8 HELIX 28 AD1 ALA A 662 ARG A 665 5 4 HELIX 29 AD2 ALA A 666 TYR A 677 1 12 SHEET 1 AA1 4 LYS A 97 LYS A 108 0 SHEET 2 AA1 4 TYR A 114 THR A 124 -1 O SER A 115 N ASP A 107 SHEET 3 AA1 4 GLY A 127 ARG A 140 -1 O LEU A 138 N TYR A 114 SHEET 4 AA1 4 THR A 145 ASN A 148 -1 O ASN A 148 N THR A 137 SHEET 1 AA2 3 LYS A 163 GLN A 169 0 SHEET 2 AA2 3 GLY A 316 THR A 322 -1 O GLY A 316 N GLN A 169 SHEET 3 AA2 3 GLU A 328 HIS A 335 -1 O LYS A 330 N ILE A 321 SHEET 1 AA3 3 VAL A 239 ILE A 244 0 SHEET 2 AA3 3 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA3 3 ALA A 255 TYR A 264 -1 O VAL A 260 N LEU A 190 SHEET 1 AA4 4 VAL A 239 ILE A 244 0 SHEET 2 AA4 4 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA4 4 ILE A 176 ILE A 177 -1 N ILE A 176 O LEU A 184 SHEET 4 AA4 4 ILE A 343 LYS A 344 1 O ILE A 343 N ILE A 177 SHEET 1 AA5 2 VAL A 278 ASP A 280 0 SHEET 2 AA5 2 LYS A 297 GLY A 299 -1 O ILE A 298 N GLY A 279 SHEET 1 AA6 5 LEU A 376 SER A 382 0 SHEET 2 AA6 5 GLY A 364 THR A 369 -1 N GLY A 364 O SER A 382 SHEET 3 AA6 5 MET A 648 LEU A 653 -1 O MET A 648 N THR A 369 SHEET 4 AA6 5 GLU A 633 PHE A 640 -1 N ALA A 639 O MET A 649 SHEET 5 AA6 5 ALA A 615 GLU A 622 -1 N ALA A 621 O ASN A 634 SHEET 1 AA7 2 LEU A 444 THR A 445 0 SHEET 2 AA7 2 GLN A 470 VAL A 471 -1 O VAL A 471 N LEU A 444 SHEET 1 AA8 2 LYS A 450 TRP A 451 0 SHEET 2 AA8 2 VAL A 462 THR A 463 -1 O VAL A 462 N TRP A 451 SHEET 1 AA9 2 LEU A 563 VAL A 564 0 SHEET 2 AA9 2 ASP A 576 LYS A 577 -1 O LYS A 577 N LEU A 563 LINK OG SER A 422 C7 IM2 A 701 1555 1555 1.60 CISPEP 1 SER A 382 PRO A 383 0 -1.73 SITE 1 AC1 11 SER A 422 VAL A 465 SER A 480 ASN A 482 SITE 2 AC1 11 GLN A 540 THR A 618 GLY A 619 THR A 620 SITE 3 AC1 11 GLU A 633 ASP A 658 ASP A 659 SITE 1 AC2 3 SER A 79 GLU A 80 HOH A 805 SITE 1 AC3 1 ASN A 644 SITE 1 AC4 4 SER A 395 GLN A 396 GLU A 397 HOH A 861 SITE 1 AC5 3 GLY A 448 LEU A 449 LYS A 450 SITE 1 AC6 2 LYS A 572 GLU A 573 SITE 1 AC7 5 GLU A 494 LYS A 495 HOH A 824 HOH A 897 SITE 2 AC7 5 HOH A 903 SITE 1 AC8 4 SER A 301 GLY A 302 HOH A 838 HOH A 852 SITE 1 AC9 4 GLY A 582 GLU A 583 THR A 584 HOH A 803 SITE 1 AD1 2 SER A 469 GLN A 470 SITE 1 AD2 3 ARG A 179 ASN A 180 HOH A 835 SITE 1 AD3 1 TRP A 451 SITE 1 AD4 1 ASN A 339 SITE 1 AD5 2 SER A 102 ASN A 103 SITE 1 AD6 2 LYS A 309 ARG A 312 SITE 1 AD7 3 VAL A 590 PRO A 591 ARG A 594 CRYST1 192.933 192.933 155.860 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005183 0.002992 0.000000 0.00000 SCALE2 0.000000 0.005985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006416 0.00000