HEADER PROTEIN BINDING/ANTIBIOTIC 25-SEP-18 6MKG TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 5 (PBP5) FROM TITLE 2 ENTEROCOCCUS FAECIUM IN THE BENZYLPENICILIN-BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN 5 (PBP5); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 3 ORGANISM_TAXID: 1352; SOURCE 4 GENE: PBP5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSPEPTIDASE, PBP5, PEPTIDE BINDING PROTEIN, PROTEIN BINDING- KEYWDS 2 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.M.MOON,C.LEE,E.D.D'ANDREA,W.PETI,R.PAGE REVDAT 5 03-APR-24 6MKG 1 REMARK REVDAT 4 18-DEC-19 6MKG 1 REMARK REVDAT 3 19-DEC-18 6MKG 1 JRNL REVDAT 2 07-NOV-18 6MKG 1 JRNL REVDAT 1 31-OCT-18 6MKG 0 JRNL AUTH T.M.MOON,E.D.D'ANDREA,C.W.LEE,A.SOARES,J.JAKONCIC, JRNL AUTH 2 C.DESBONNET,M.GARCIA-SOLACHE,L.B.RICE,R.PAGE,W.PETI JRNL TITL THE STRUCTURES OF PENICILLIN-BINDING PROTEIN 4 (PBP4) AND JRNL TITL 2 PBP5 FROMENTEROCOCCIPROVIDE STRUCTURAL INSIGHTS INTO JRNL TITL 3 BETA-LACTAM RESISTANCE. JRNL REF J. BIOL. CHEM. V. 293 18574 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30355734 JRNL DOI 10.1074/JBC.RA118.006052 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 36572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0269 - 6.8920 0.99 2906 142 0.1705 0.1832 REMARK 3 2 6.8920 - 5.4752 1.00 2776 125 0.1875 0.1971 REMARK 3 3 5.4752 - 4.7845 1.00 2713 145 0.1633 0.1727 REMARK 3 4 4.7845 - 4.3477 1.00 2699 136 0.1494 0.1493 REMARK 3 5 4.3477 - 4.0364 1.00 2674 144 0.1526 0.1899 REMARK 3 6 4.0364 - 3.7986 1.00 2684 120 0.1789 0.1957 REMARK 3 7 3.7986 - 3.6085 1.00 2681 125 0.1916 0.1878 REMARK 3 8 3.6085 - 3.4515 1.00 2652 142 0.2064 0.2199 REMARK 3 9 3.4515 - 3.3187 1.00 2657 130 0.2316 0.2722 REMARK 3 10 3.3187 - 3.2043 1.00 2638 136 0.2554 0.2479 REMARK 3 11 3.2043 - 3.1041 1.00 2625 148 0.2840 0.3066 REMARK 3 12 3.1041 - 3.0154 1.00 2600 174 0.2874 0.3055 REMARK 3 13 3.0154 - 2.9361 0.93 2483 117 0.3072 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4896 REMARK 3 ANGLE : 0.453 6680 REMARK 3 CHIRALITY : 0.041 758 REMARK 3 PLANARITY : 0.003 868 REMARK 3 DIHEDRAL : 13.930 2883 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000236123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : FLAT SI RH COATED M0, REMARK 200 KIRKPATRICK-BAEZ FLAT BENT SI M1 REMARK 200 & M2 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 39.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.24200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 2.67300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PBP5 APO OPEN REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISODIUM CITRATE, 2M AMMONIUM REMARK 280 SULFATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.04700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.04700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.04700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.04700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.04700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.04700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 LYS A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 ARG A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 TYR A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 ILE A 21 REMARK 465 LEU A 22 REMARK 465 ILE A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 TYR A 30 REMARK 465 PHE A 31 REMARK 465 TYR A 32 REMARK 465 TYR A 33 REMARK 465 GLN A 34 REMARK 465 HIS A 35 REMARK 465 TYR A 36 REMARK 465 GLN A 37 REMARK 465 GLU A 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 142 CG OD1 OD2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ILE A 213 CG1 CG2 CD1 REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 LEU A 219 CG CD1 CD2 REMARK 470 THR A 220 OG1 CG2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ASP A 236 CG OD1 OD2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 THR A 256 OG1 CG2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ASP A 323 CG OD1 OD2 REMARK 470 ASP A 325 CG OD1 OD2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 ASP A 509 CG OD1 OD2 REMARK 470 LYS A 624 CG CD CE NZ REMARK 470 LYS A 626 CG CD CE NZ REMARK 470 ASP A 628 CG OD1 OD2 REMARK 470 VAL A 629 CG1 CG2 REMARK 470 LYS A 630 CG CD CE NZ REMARK 470 LYS A 632 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 806 O HOH A 818 1.90 REMARK 500 O GLY A 276 O HOH A 801 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -122.55 -114.29 REMARK 500 ASP A 110 -157.65 -143.63 REMARK 500 ASP A 142 -101.20 55.69 REMARK 500 GLU A 159 -150.60 -95.28 REMARK 500 LYS A 199 30.56 -86.85 REMARK 500 LEU A 241 -62.35 -124.86 REMARK 500 PRO A 249 -180.00 -68.67 REMARK 500 PRO A 252 -179.66 -68.74 REMARK 500 SER A 294 47.38 -67.71 REMARK 500 ASN A 295 -14.02 -170.33 REMARK 500 LYS A 329 -74.27 -92.07 REMARK 500 ASN A 392 -107.56 -79.91 REMARK 500 GLN A 408 80.55 53.71 REMARK 500 ASP A 472 -169.63 -108.55 REMARK 500 SER A 480 70.32 55.26 REMARK 500 PHE A 504 -139.64 -92.91 REMARK 500 PRO A 513 32.47 -79.00 REMARK 500 GLN A 540 10.45 -147.28 REMARK 500 ASN A 559 27.51 -142.03 REMARK 500 LYS A 626 99.94 -62.12 REMARK 500 GLN A 627 -39.70 -160.89 REMARK 500 ASP A 628 -148.10 -154.35 REMARK 500 LYS A 630 -163.42 57.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PNM A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 719 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 720 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 721 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 722 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 723 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 724 DBREF1 6MKG A 1 678 UNP A0A075Q0W3_ENTFC DBREF2 6MKG A A0A075Q0W3 1 678 SEQRES 1 A 678 MET LYS ARG SER ASP LYS HIS GLY LYS ASN ARG THR GLY SEQRES 2 A 678 ALA TYR ILE ALA GLY ALA VAL ILE LEU ILE ALA ALA ALA SEQRES 3 A 678 GLY GLY GLY TYR PHE TYR TYR GLN HIS TYR GLN GLU THR SEQRES 4 A 678 GLN ALA VAL GLU ALA GLY GLU LYS THR VAL GLU GLN PHE SEQRES 5 A 678 VAL GLN ALA LEU ASN LYS GLY ASP TYR ASN LYS ALA ALA SEQRES 6 A 678 GLU MET THR SER LYS LYS ALA ALA ASN LYS SER ALA LEU SEQRES 7 A 678 SER GLU LYS GLU ILE LEU ASP LYS TYR GLN ASN ILE TYR SEQRES 8 A 678 GLY ALA ALA ASP VAL LYS GLY LEU GLN ILE SER ASN LEU SEQRES 9 A 678 LYS VAL ASP LYS LYS ASP ASP SER THR TYR SER PHE SER SEQRES 10 A 678 TYR LYS ALA LYS MET ASN THR SER LEU GLY GLU LEU LYS SEQRES 11 A 678 ASP LEU SER TYR LYS GLY THR LEU ASP ARG ASN ASP GLY SEQRES 12 A 678 GLN THR THR ILE ASN TRP GLN PRO ASN LEU VAL PHE PRO SEQRES 13 A 678 GLU MET GLU GLY ASN ASP LYS VAL SER LEU THR THR GLN SEQRES 14 A 678 GLU ALA ALA ARG GLY ASN ILE ILE ASP ARG ASN GLY GLU SEQRES 15 A 678 PRO LEU ALA THR THR GLY LYS LEU LYS GLN LEU GLY VAL SEQRES 16 A 678 VAL PRO SER LYS LEU GLY ASP GLY GLY GLU LYS THR ALA SEQRES 17 A 678 ASN ILE LYS ALA ILE ALA SER SER PHE ASP LEU THR GLU SEQRES 18 A 678 ASP ALA ILE ASN GLN ALA ILE SER GLN SER TRP VAL GLN SEQRES 19 A 678 PRO ASP TYR PHE VAL PRO LEU LYS ILE ILE ASP GLY ALA SEQRES 20 A 678 THR PRO GLU LEU PRO ALA GLY ALA THR ILE GLN GLU VAL SEQRES 21 A 678 ASP GLY ARG TYR TYR PRO LEU GLY GLU ALA ALA ALA GLN SEQRES 22 A 678 LEU ILE GLY TYR VAL GLY ASP ILE THR ALA GLU ASP ILE SEQRES 23 A 678 ASP LYS ASN PRO GLU LEU SER SER ASN GLY LYS ILE GLY SEQRES 24 A 678 ARG SER GLY LEU GLU MET ALA PHE ASP LYS ASP LEU ARG SEQRES 25 A 678 GLY THR THR GLY GLY LYS LEU SER ILE THR ASP ALA ASP SEQRES 26 A 678 GLY VAL GLU LYS LYS VAL LEU ILE GLU HIS GLU VAL GLN SEQRES 27 A 678 ASN GLY LYS ASP ILE LYS LEU THR ILE ASP ALA LYS ALA SEQRES 28 A 678 GLN LYS THR ALA PHE ASP SER LEU GLY GLY LYS ALA GLY SEQRES 29 A 678 SER THR VAL ALA THR THR PRO LYS THR GLY ASP LEU LEU SEQRES 30 A 678 ALA LEU ALA SER SER PRO SER TYR ASP PRO ASN LYS MET SEQRES 31 A 678 THR ASN GLY ILE SER GLN GLU ASP TYR LYS ALA TYR GLU SEQRES 32 A 678 GLU ASN PRO GLU GLN PRO PHE ILE SER ARG PHE ALA THR SEQRES 33 A 678 GLY TYR ALA PRO GLY SER THR PHE LYS MET ILE THR ALA SEQRES 34 A 678 ALA ILE GLY LEU ASP ASN GLY THR ILE ASP PRO ASN GLU SEQRES 35 A 678 VAL LEU THR ILE ASN GLY LEU LYS TRP GLN LYS ASP SER SEQRES 36 A 678 SER TRP GLY SER TYR GLN VAL THR ARG VAL SER ASP VAL SEQRES 37 A 678 SER GLN VAL ASP LEU LYS THR ALA LEU ILE TYR SER ASP SEQRES 38 A 678 ASN ILE TYR THR ALA GLN GLU THR LEU LYS MET GLY GLU SEQRES 39 A 678 LYS LYS PHE ARG THR GLY LEU ASP LYS PHE ILE PHE GLY SEQRES 40 A 678 GLU ASP LEU ASP LEU PRO ILE SER MET ASN PRO ALA GLN SEQRES 41 A 678 ILE SER ASN GLU ASP SER PHE ASN SER ASP ILE LEU LEU SEQRES 42 A 678 ALA ASP THR GLY TYR GLY GLN GLY GLU LEU LEU ILE ASN SEQRES 43 A 678 PRO ILE GLN GLN ALA ALA MET TYR SER VAL PHE ALA ASN SEQRES 44 A 678 ASN GLY THR LEU VAL TYR PRO LYS LEU ILE ALA ASP LYS SEQRES 45 A 678 GLU THR LYS ASP LYS LYS ASN VAL ILE GLY GLU THR ALA SEQRES 46 A 678 VAL GLN THR ILE VAL PRO ASP LEU ARG GLU VAL VAL GLN SEQRES 47 A 678 ASP VAL ASN GLY THR ALA HIS SER LEU SER ALA LEU GLY SEQRES 48 A 678 ILE PRO LEU ALA ALA LYS THR GLY THR ALA GLU ILE LYS SEQRES 49 A 678 GLU LYS GLN ASP VAL LYS GLY LYS GLU ASN SER PHE LEU SEQRES 50 A 678 PHE ALA PHE ASN PRO ASP ASN GLN GLY TYR MET MET VAL SEQRES 51 A 678 SER MET LEU GLU ASN LYS GLU ASP ASP ASP SER ALA THR SEQRES 52 A 678 LYS ARG ALA SER GLU LEU LEU GLN TYR LEU ASN GLN ASN SEQRES 53 A 678 TYR GLN HET PNM A 701 23 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET SO4 A 708 5 HET SO4 A 709 5 HET SO4 A 710 5 HET SO4 A 711 5 HET SO4 A 712 5 HET SO4 A 713 5 HET SO4 A 714 5 HET SO4 A 715 5 HET SO4 A 716 5 HET SO4 A 717 5 HET SO4 A 718 5 HET SO4 A 719 5 HET SO4 A 720 5 HET SO4 A 721 5 HET SO4 A 722 5 HET SO4 A 723 5 HET SO4 A 724 5 HETNAM PNM OPEN FORM - PENICILLIN G HETNAM SO4 SULFATE ION FORMUL 2 PNM C16 H20 N2 O4 S FORMUL 3 SO4 23(O4 S 2-) FORMUL 26 HOH *39(H2 O) HELIX 1 AA1 ALA A 41 LYS A 58 1 18 HELIX 2 AA2 ASP A 60 GLU A 66 1 7 HELIX 3 AA3 SER A 79 ASP A 95 1 17 HELIX 4 AA4 GLN A 150 VAL A 154 5 5 HELIX 5 AA5 PRO A 197 LEU A 200 5 4 HELIX 6 AA6 GLY A 204 SER A 216 1 13 HELIX 7 AA7 THR A 220 ILE A 228 1 9 HELIX 8 AA8 LEU A 267 ALA A 270 5 4 HELIX 9 AA9 ALA A 271 GLY A 276 1 6 HELIX 10 AB1 THR A 282 ASN A 289 1 8 HELIX 11 AB2 SER A 301 PHE A 307 1 7 HELIX 12 AB3 PHE A 307 GLY A 313 1 7 HELIX 13 AB4 ASP A 348 SER A 358 1 11 HELIX 14 AB5 ASP A 386 ASN A 392 1 7 HELIX 15 AB6 SER A 395 ASN A 405 1 11 HELIX 16 AB7 SER A 412 THR A 416 5 5 HELIX 17 AB8 PRO A 420 THR A 423 5 4 HELIX 18 AB9 PHE A 424 ASN A 435 1 12 HELIX 19 AC1 ASP A 454 GLY A 458 5 5 HELIX 20 AC2 ASP A 472 SER A 480 1 9 HELIX 21 AC3 ASP A 481 ASP A 502 1 22 HELIX 22 AC4 SER A 529 TYR A 538 1 10 HELIX 23 AC5 ASN A 546 SER A 555 1 10 HELIX 24 AC6 VAL A 556 ASN A 559 5 4 HELIX 25 AC7 GLY A 582 ASP A 599 1 18 HELIX 26 AC8 ALA A 604 GLY A 611 5 8 HELIX 27 AC9 ALA A 662 ARG A 665 5 4 HELIX 28 AD1 ALA A 666 TYR A 677 1 12 SHEET 1 AA1 4 LYS A 97 LYS A 108 0 SHEET 2 AA1 4 THR A 113 THR A 124 -1 O LYS A 119 N SER A 102 SHEET 3 AA1 4 GLY A 127 ASN A 141 -1 O LEU A 129 N MET A 122 SHEET 4 AA1 4 GLN A 144 ASN A 148 -1 O THR A 146 N ASP A 139 SHEET 1 AA2 3 LYS A 163 GLN A 169 0 SHEET 2 AA2 3 GLY A 316 THR A 322 -1 O THR A 322 N LYS A 163 SHEET 3 AA2 3 GLU A 328 HIS A 335 -1 O HIS A 335 N GLY A 317 SHEET 1 AA3 3 VAL A 239 ILE A 244 0 SHEET 2 AA3 3 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA3 3 ALA A 255 TYR A 264 -1 O TYR A 264 N THR A 186 SHEET 1 AA4 4 VAL A 239 ILE A 244 0 SHEET 2 AA4 4 PRO A 183 VAL A 195 -1 N LEU A 193 O LEU A 241 SHEET 3 AA4 4 ILE A 176 ILE A 177 -1 N ILE A 176 O LEU A 184 SHEET 4 AA4 4 ILE A 343 LYS A 344 1 O ILE A 343 N ILE A 177 SHEET 1 AA5 2 VAL A 278 ASP A 280 0 SHEET 2 AA5 2 LYS A 297 GLY A 299 -1 O ILE A 298 N GLY A 279 SHEET 1 AA6 5 LEU A 376 SER A 382 0 SHEET 2 AA6 5 GLY A 364 THR A 369 -1 N GLY A 364 O SER A 382 SHEET 3 AA6 5 MET A 648 LEU A 653 -1 O MET A 648 N THR A 369 SHEET 4 AA6 5 LYS A 632 PHE A 640 -1 N ALA A 639 O MET A 649 SHEET 5 AA6 5 ALA A 615 ILE A 623 -1 N GLY A 619 O PHE A 636 SHEET 1 AA7 2 LEU A 444 THR A 445 0 SHEET 2 AA7 2 GLN A 470 VAL A 471 -1 O VAL A 471 N LEU A 444 SHEET 1 AA8 2 LYS A 450 TRP A 451 0 SHEET 2 AA8 2 VAL A 462 THR A 463 -1 O VAL A 462 N TRP A 451 SHEET 1 AA9 2 LEU A 563 VAL A 564 0 SHEET 2 AA9 2 ASP A 576 LYS A 577 -1 O LYS A 577 N LEU A 563 LINK OG SER A 422 C7 PNM A 701 1555 1555 1.40 CISPEP 1 SER A 382 PRO A 383 0 -1.38 SITE 1 AC1 10 SER A 422 VAL A 465 SER A 480 ASN A 482 SITE 2 AC1 10 THR A 618 GLY A 619 THR A 620 GLU A 622 SITE 3 AC1 10 GLU A 633 ASP A 659 SITE 1 AC2 3 GLY A 582 GLU A 583 THR A 584 SITE 1 AC3 2 SER A 79 GLU A 80 SITE 1 AC4 4 SER A 606 SER A 661 THR A 663 LYS A 664 SITE 1 AC5 3 SER A 102 ASN A 103 LEU A 104 SITE 1 AC6 2 GLU A 508 ASP A 509 SITE 1 AC7 1 THR A 574 SITE 1 AC8 2 ARG A 179 ASN A 180 SITE 1 AC9 1 ARG A 312 SITE 1 AD1 4 GLY A 493 GLU A 494 LYS A 495 HOH A 807 SITE 1 AD2 3 VAL A 590 PRO A 591 ARG A 594 SITE 1 AD3 3 SER A 301 GLY A 302 HOH A 809 SITE 1 AD4 3 LYS A 86 ASN A 89 GLU A 284 SITE 1 AD5 1 TRP A 451 SITE 1 AD6 2 SER A 469 GLN A 470 SITE 1 AD7 3 GLY A 448 LEU A 449 LYS A 450 SITE 1 AD8 2 LYS A 572 GLU A 573 SITE 1 AD9 2 ASP A 472 LYS A 474 SITE 1 AE1 1 ASN A 339 SITE 1 AE2 2 ASN A 644 GLN A 678 SITE 1 AE3 2 LYS A 577 LYS A 578 SITE 1 AE4 3 SER A 395 GLN A 396 GLU A 397 SITE 1 AE5 3 ASN A 161 HOH A 802 HOH A 804 SITE 1 AE6 3 ASN A 62 LYS A 63 GLU A 66 CRYST1 192.315 192.315 156.094 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005200 0.003002 0.000000 0.00000 SCALE2 0.000000 0.006004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006406 0.00000