HEADER SIGNALING PROTEIN 30-SEP-18 6MMD TITLE PHOTOACTIVE YELLOW PROTEIN WITH 3,5-DICHLOROTYROSINE SUBSTITUTED AT TITLE 2 POSITION 42 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALORHODOSPIRA HALOPHILA; SOURCE 3 ORGANISM_TAXID: 1053; SOURCE 4 GENE: PYP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHLORINATED CHROMOPHORE, HYDROGEN BONDING NETWORK, ACTIVE SITE, LOW- KEYWDS 2 BARRIER HYDROGEN BOND, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.D.THOMSON,J.BOTH,Y.WU,R.M.PARRISH,T.MARTINEZ,S.G.BOXER REVDAT 5 11-OCT-23 6MMD 1 REMARK REVDAT 4 27-NOV-19 6MMD 1 REMARK REVDAT 3 26-JUN-19 6MMD 1 JRNL REVDAT 2 05-JUN-19 6MMD 1 JRNL REVDAT 1 29-MAY-19 6MMD 0 JRNL AUTH B.THOMSON,J.BOTH,Y.WU,R.M.PARRISH,T.J.MARTINEZ,S.G.BOXER JRNL TITL PERTURBATION OF SHORT HYDROGEN BONDS IN PHOTOACTIVE YELLOW JRNL TITL 2 PROTEIN VIA NONCANONICAL AMINO ACID INCORPORATION. JRNL REF J.PHYS.CHEM.B V. 123 4844 2019 JRNL REFN ISSN 1089-5647 JRNL PMID 31117606 JRNL DOI 10.1021/ACS.JPCB.9B01571 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 56617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0437 - 3.3881 0.99 2612 108 0.1302 0.1311 REMARK 3 2 3.3881 - 2.6897 1.00 2541 185 0.1501 0.1890 REMARK 3 3 2.6897 - 2.3498 0.99 2534 160 0.1503 0.1882 REMARK 3 4 2.3498 - 2.1350 0.99 2573 135 0.1443 0.1697 REMARK 3 5 2.1350 - 1.9820 1.00 2635 115 0.1414 0.1682 REMARK 3 6 1.9820 - 1.8651 1.00 2557 150 0.1508 0.1887 REMARK 3 7 1.8651 - 1.7717 0.99 2594 128 0.1555 0.1948 REMARK 3 8 1.7717 - 1.6946 1.00 2592 165 0.1590 0.1915 REMARK 3 9 1.6946 - 1.6294 1.00 2551 146 0.1591 0.1652 REMARK 3 10 1.6294 - 1.5731 1.00 2620 100 0.1574 0.2138 REMARK 3 11 1.5731 - 1.5240 1.00 2594 170 0.1654 0.2076 REMARK 3 12 1.5240 - 1.4804 0.99 2547 150 0.1740 0.1980 REMARK 3 13 1.4804 - 1.4414 0.99 2542 140 0.1833 0.1742 REMARK 3 14 1.4414 - 1.4063 1.00 2603 105 0.1847 0.2585 REMARK 3 15 1.4063 - 1.3743 1.00 2610 129 0.1891 0.2057 REMARK 3 16 1.3743 - 1.3450 0.99 2528 158 0.1870 0.2142 REMARK 3 17 1.3450 - 1.3181 0.99 2645 108 0.1883 0.2032 REMARK 3 18 1.3181 - 1.2933 0.98 2529 156 0.2037 0.2260 REMARK 3 19 1.2933 - 1.2702 0.98 2508 137 0.2185 0.2296 REMARK 3 20 1.2702 - 1.2486 0.97 2522 119 0.2298 0.2662 REMARK 3 21 1.2486 - 1.2285 0.90 2256 160 0.2551 0.2769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2022 REMARK 3 ANGLE : 1.446 2720 REMARK 3 CHIRALITY : 0.092 280 REMARK 3 PLANARITY : 0.010 360 REMARK 3 DIHEDRAL : 14.816 726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 125) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7459 36.4654 -0.5276 REMARK 3 T TENSOR REMARK 3 T11: 0.1175 T22: 0.1181 REMARK 3 T33: 0.1238 T12: -0.0137 REMARK 3 T13: -0.0081 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.8438 L22: 1.9168 REMARK 3 L33: 1.9752 L12: 0.1602 REMARK 3 L13: 0.0671 L23: -0.4155 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0282 S13: 0.0952 REMARK 3 S21: 0.0075 S22: -0.0285 S23: -0.1330 REMARK 3 S31: -0.1768 S32: 0.1370 S33: 0.0395 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 125) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7469 37.9577 -20.7811 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.1084 REMARK 3 T33: 0.1233 T12: 0.0076 REMARK 3 T13: -0.0066 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.4244 L22: 1.2626 REMARK 3 L33: 1.8954 L12: -0.5662 REMARK 3 L13: 0.3549 L23: -0.2192 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.0003 S13: 0.1506 REMARK 3 S21: -0.0137 S22: -0.0102 S23: 0.0161 REMARK 3 S31: -0.2043 S32: -0.0857 S33: 0.0359 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56619 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.228 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NWZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM CHLORIDE, 2.4M AMMONIUM REMARK 280 SULFATE, PH = 6.0, DROPS WERE MICROSEEDED, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 442 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 337 O HOH A 422 1.63 REMARK 500 ND1 HIS B 3 O HOH B 301 1.88 REMARK 500 N LEU B 88 O HOH B 302 1.91 REMARK 500 O HOH B 414 O HOH B 434 1.92 REMARK 500 O HOH A 375 O HOH A 389 1.98 REMARK 500 O HOH B 377 O HOH B 391 2.02 REMARK 500 O HOH B 303 O HOH B 402 2.04 REMARK 500 O HOH A 405 O HOH A 426 2.04 REMARK 500 ND1 HIS A 3 O HOH A 301 2.04 REMARK 500 O HOH A 350 O HOH A 426 2.05 REMARK 500 O HOH A 306 O HOH A 400 2.09 REMARK 500 O HOH B 302 O HOH B 421 2.09 REMARK 500 N ASP B 116 O HOH B 303 2.10 REMARK 500 OE1 GLN B 99 O HOH B 304 2.10 REMARK 500 NE2 GLN A 99 O HOH A 302 2.12 REMARK 500 O HOH B 308 O HOH B 408 2.14 REMARK 500 OD1 ASP A 65 O HOH A 303 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 423 O HOH B 410 1556 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 109 CG - SD - CE ANGL. DEV. = -16.9 DEGREES REMARK 500 MET B 109 CG - SD - CE ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2LT A 42 118.61 -165.26 REMARK 500 PHE A 75 -75.80 -127.50 REMARK 500 ASN A 89 94.61 -163.91 REMARK 500 ASP A 97 16.18 -141.20 REMARK 500 2LT B 42 118.38 -164.97 REMARK 500 PHE B 75 -75.16 -129.27 REMARK 500 ASN B 89 94.21 -163.85 REMARK 500 ASP B 97 16.17 -141.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 430 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 431 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 441 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 442 DISTANCE = 6.16 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HC4 B 201 and CYS B REMARK 800 69 DBREF 6MMD A 1 125 UNP P16113 PYP_HALHA 1 125 DBREF 6MMD B 1 125 UNP P16113 PYP_HALHA 1 125 SEQRES 1 A 125 MET GLU HIS VAL ALA PHE GLY SER GLU ASP ILE GLU ASN SEQRES 2 A 125 THR LEU ALA LYS MET ASP ASP GLY GLN LEU ASP GLY LEU SEQRES 3 A 125 ALA PHE GLY ALA ILE GLN LEU ASP GLY ASP GLY ASN ILE SEQRES 4 A 125 LEU GLN 2LT ASN ALA ALA GLU GLY ASP ILE THR GLY ARG SEQRES 5 A 125 ASP PRO LYS GLN VAL ILE GLY LYS ASN PHE PHE LYS ASP SEQRES 6 A 125 VAL ALA PRO CYS THR ASP SER PRO GLU PHE TYR GLY LYS SEQRES 7 A 125 PHE LYS GLU GLY VAL ALA SER GLY ASN LEU ASN THR MET SEQRES 8 A 125 PHE GLU TYR THR PHE ASP TYR GLN MET THR PRO THR LYS SEQRES 9 A 125 VAL LYS VAL HIS MET LYS LYS ALA LEU SER GLY ASP SER SEQRES 10 A 125 TYR TRP VAL PHE VAL LYS ARG VAL SEQRES 1 B 125 MET GLU HIS VAL ALA PHE GLY SER GLU ASP ILE GLU ASN SEQRES 2 B 125 THR LEU ALA LYS MET ASP ASP GLY GLN LEU ASP GLY LEU SEQRES 3 B 125 ALA PHE GLY ALA ILE GLN LEU ASP GLY ASP GLY ASN ILE SEQRES 4 B 125 LEU GLN 2LT ASN ALA ALA GLU GLY ASP ILE THR GLY ARG SEQRES 5 B 125 ASP PRO LYS GLN VAL ILE GLY LYS ASN PHE PHE LYS ASP SEQRES 6 B 125 VAL ALA PRO CYS THR ASP SER PRO GLU PHE TYR GLY LYS SEQRES 7 B 125 PHE LYS GLU GLY VAL ALA SER GLY ASN LEU ASN THR MET SEQRES 8 B 125 PHE GLU TYR THR PHE ASP TYR GLN MET THR PRO THR LYS SEQRES 9 B 125 VAL LYS VAL HIS MET LYS LYS ALA LEU SER GLY ASP SER SEQRES 10 B 125 TYR TRP VAL PHE VAL LYS ARG VAL MODRES 6MMD 2LT A 42 TYR MODIFIED RESIDUE MODRES 6MMD 2LT B 42 TYR MODIFIED RESIDUE HET 2LT A 42 14 HET 2LT B 42 14 HET HC4 A 201 17 HET HC4 B 201 17 HETNAM 2LT 3,5-DICHLORO-L-TYROSINE HETNAM HC4 4'-HYDROXYCINNAMIC ACID HETSYN HC4 PARA-COUMARIC ACID FORMUL 1 2LT 2(C9 H9 CL2 N O3) FORMUL 3 HC4 2(C9 H8 O3) FORMUL 5 HOH *273(H2 O) HELIX 1 AA1 ASP A 10 ALA A 16 1 7 HELIX 2 AA2 ASP A 19 ASP A 24 1 6 HELIX 3 AA3 ASN A 43 GLY A 51 1 9 HELIX 4 AA4 ASP A 53 ILE A 58 1 6 HELIX 5 AA5 ALA A 67 ASP A 71 5 5 HELIX 6 AA6 PHE A 75 GLY A 86 1 12 HELIX 7 AA7 ASP B 10 ALA B 16 1 7 HELIX 8 AA8 ASP B 19 ASP B 24 1 6 HELIX 9 AA9 ASN B 43 GLY B 51 1 9 HELIX 10 AB1 ASP B 53 ILE B 58 1 6 HELIX 11 AB2 ALA B 67 ASP B 71 5 5 HELIX 12 AB3 PHE B 75 GLY B 86 1 12 SHEET 1 AA1 5 ILE A 39 2LT A 42 0 SHEET 2 AA1 5 GLY A 29 LEU A 33 -1 N GLN A 32 O LEU A 40 SHEET 3 AA1 5 TYR A 118 ARG A 124 -1 O TYR A 118 N LEU A 33 SHEET 4 AA1 5 THR A 103 LYS A 111 -1 N HIS A 108 O PHE A 121 SHEET 5 AA1 5 ASN A 89 PHE A 96 -1 N THR A 90 O MET A 109 SHEET 1 AA2 5 ILE B 39 2LT B 42 0 SHEET 2 AA2 5 GLY B 29 LEU B 33 -1 N GLN B 32 O LEU B 40 SHEET 3 AA2 5 TYR B 118 ARG B 124 -1 O TYR B 118 N LEU B 33 SHEET 4 AA2 5 THR B 103 LYS B 111 -1 N HIS B 108 O PHE B 121 SHEET 5 AA2 5 ASN B 89 PHE B 96 -1 N THR B 90 O MET B 109 LINK C GLN A 41 N 2LT A 42 1555 1555 1.33 LINK C 2LT A 42 N ASN A 43 1555 1555 1.32 LINK SG CYS A 69 C1 HC4 A 201 1555 1555 1.77 LINK C GLN B 41 N 2LT B 42 1555 1555 1.33 LINK C 2LT B 42 N ASN B 43 1555 1555 1.32 LINK SG CYS B 69 C1 HC4 B 201 1555 1555 1.80 SITE 1 AC1 9 2LT A 42 GLU A 46 THR A 50 ARG A 52 SITE 2 AC1 9 ALA A 67 PRO A 68 CYS A 69 PHE A 96 SITE 3 AC1 9 TYR A 98 SITE 1 AC2 13 2LT B 42 GLU B 46 THR B 50 ARG B 52 SITE 2 AC2 13 ALA B 67 PRO B 68 THR B 70 ASP B 71 SITE 3 AC2 13 TYR B 94 PHE B 96 ASP B 97 TYR B 98 SITE 4 AC2 13 HOH B 359 CRYST1 65.909 65.909 40.503 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015172 0.008760 0.000000 0.00000 SCALE2 0.000000 0.017520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024690 0.00000