HEADER IMMUNE SYSTEM 02-OCT-18 6MNR TITLE RHESUS MACAQUE ANTI-HIV V3 ANTIBODY DH753 WITH GP120 V3 ZAM18 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AB DH753 HEAVY CHAIN FAB FRAGMENT; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AB DH753 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 7 ORGANISM_TAXID: 9544; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: HEK-293; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 14 ORGANISM_TAXID: 9544; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK-293 KEYWDS HIV-1 GP120 V3 ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.I.NICELY REVDAT 3 11-OCT-23 6MNR 1 REMARK REVDAT 2 18-DEC-19 6MNR 1 REMARK REVDAT 1 24-JUL-19 6MNR 0 JRNL AUTH Q.HAN,J.A.JONES,N.I.NICELY,R.K.REED,X.SHEN,K.MANSOURI, JRNL AUTH 2 M.LOUDER,A.M.TRAMA,S.M.ALAM,R.J.EDWARDS,M.BONSIGNORI, JRNL AUTH 3 G.D.TOMARAS,B.KORBER,D.C.MONTEFIORI,J.R.MASCOLA,M.S.SEAMAN, JRNL AUTH 4 B.F.HAYNES,K.O.SAUNDERS JRNL TITL DIFFICULT-TO-NEUTRALIZE GLOBAL HIV-1 ISOLATES ARE JRNL TITL 2 NEUTRALIZED BY ANTIBODIES TARGETING OPEN ENVELOPE JRNL TITL 3 CONFORMATIONS. JRNL REF NAT COMMUN V. 10 2898 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31263112 JRNL DOI 10.1038/S41467-019-10899-2 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4188 - 5.3011 1.00 1654 154 0.1743 0.2332 REMARK 3 2 5.3011 - 4.2088 1.00 1555 147 0.1345 0.1747 REMARK 3 3 4.2088 - 3.6771 1.00 1558 145 0.1600 0.2198 REMARK 3 4 3.6771 - 3.3410 1.00 1524 143 0.1914 0.2775 REMARK 3 5 3.3410 - 3.1016 1.00 1522 143 0.2267 0.2313 REMARK 3 6 3.1016 - 2.9188 1.00 1517 143 0.2267 0.3002 REMARK 3 7 2.9188 - 2.7727 1.00 1504 141 0.2200 0.3048 REMARK 3 8 2.7727 - 2.6520 1.00 1503 141 0.2296 0.2709 REMARK 3 9 2.6520 - 2.5499 1.00 1498 140 0.2201 0.2742 REMARK 3 10 2.5499 - 2.4619 1.00 1506 142 0.2207 0.3450 REMARK 3 11 2.4619 - 2.3849 1.00 1493 140 0.2293 0.3144 REMARK 3 12 2.3849 - 2.3168 1.00 1478 139 0.2465 0.3902 REMARK 3 13 2.3168 - 2.2558 1.00 1517 142 0.2386 0.3439 REMARK 3 14 2.2558 - 2.2008 0.99 1485 139 0.2519 0.3176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3417 REMARK 3 ANGLE : 1.129 4647 REMARK 3 CHIRALITY : 0.040 530 REMARK 3 PLANARITY : 0.005 588 REMARK 3 DIHEDRAL : 14.278 1198 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2767 -10.9584 -17.2738 REMARK 3 T TENSOR REMARK 3 T11: 0.3255 T22: 0.3108 REMARK 3 T33: 0.2799 T12: -0.0452 REMARK 3 T13: -0.0597 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: 2.3089 L22: 3.6996 REMARK 3 L33: 5.2986 L12: -0.0530 REMARK 3 L13: -1.0896 L23: -0.0349 REMARK 3 S TENSOR REMARK 3 S11: -0.2043 S12: 0.4156 S13: -0.1878 REMARK 3 S21: -0.3444 S22: 0.1949 S23: -0.0146 REMARK 3 S31: 0.3902 S32: 0.1703 S33: 0.0365 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 27:113) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9575 -9.1973 -8.9719 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.2697 REMARK 3 T33: 0.1987 T12: -0.0252 REMARK 3 T13: -0.0117 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 6.2040 L22: 3.1894 REMARK 3 L33: 3.0968 L12: 0.4940 REMARK 3 L13: 0.3314 L23: -0.5460 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: -0.3866 S13: -0.1422 REMARK 3 S21: -0.0517 S22: -0.0148 S23: 0.0283 REMARK 3 S31: 0.1363 S32: 0.1847 S33: 0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 114:214) REMARK 3 ORIGIN FOR THE GROUP (A): -42.0724 2.5331 -33.7422 REMARK 3 T TENSOR REMARK 3 T11: 0.3837 T22: 0.1620 REMARK 3 T33: 0.3397 T12: 0.0106 REMARK 3 T13: 0.0278 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.2274 L22: 3.3203 REMARK 3 L33: 4.6547 L12: 1.9157 REMARK 3 L13: -1.6592 L23: -2.6722 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: 0.1120 S13: 0.1355 REMARK 3 S21: -0.5447 S22: 0.0055 S23: -0.1026 REMARK 3 S31: 0.0515 S32: 0.0567 S33: -0.0130 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN L AND RESID 2:32) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3334 13.5568 0.3671 REMARK 3 T TENSOR REMARK 3 T11: 0.6604 T22: 0.5340 REMARK 3 T33: 0.4770 T12: -0.1069 REMARK 3 T13: -0.0189 T23: -0.2493 REMARK 3 L TENSOR REMARK 3 L11: 4.2504 L22: 5.3740 REMARK 3 L33: 6.1834 L12: -1.9749 REMARK 3 L13: 1.2672 L23: -1.7238 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.8075 S13: 0.6266 REMARK 3 S21: 0.7581 S22: -0.1044 S23: -0.1659 REMARK 3 S31: -1.0892 S32: -0.2430 S33: 0.1182 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN L AND RESID 33:106A) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6753 9.9090 -6.3074 REMARK 3 T TENSOR REMARK 3 T11: 0.2775 T22: 0.3441 REMARK 3 T33: 0.3701 T12: -0.0926 REMARK 3 T13: -0.0136 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 4.1875 L22: 6.4639 REMARK 3 L33: 5.0600 L12: -1.1324 REMARK 3 L13: 1.5227 L23: -1.3680 REMARK 3 S TENSOR REMARK 3 S11: 0.0918 S12: -0.3983 S13: 0.8073 REMARK 3 S21: 0.3070 S22: -0.2259 S23: -0.0811 REMARK 3 S31: -0.4516 S32: 0.0064 S33: 0.1678 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN L AND RESID 107:208) REMARK 3 ORIGIN FOR THE GROUP (A): -51.3360 14.9447 -28.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.4286 T22: 0.1965 REMARK 3 T33: 0.3598 T12: 0.0398 REMARK 3 T13: 0.0543 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 4.9413 L22: 4.7478 REMARK 3 L33: 4.4530 L12: 0.4695 REMARK 3 L13: 2.7601 L23: 1.4553 REMARK 3 S TENSOR REMARK 3 S11: 0.1344 S12: -0.1019 S13: -0.2457 REMARK 3 S21: -0.0968 S22: 0.0923 S23: 0.2513 REMARK 3 S31: -0.1945 S32: -0.3122 S33: -0.1985 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN P AND RESID 305:309) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5215 -4.5187 2.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.3990 T22: 0.5067 REMARK 3 T33: 0.3964 T12: -0.0196 REMARK 3 T13: -0.0470 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 5.6404 L22: 4.8242 REMARK 3 L33: 2.9161 L12: 2.2014 REMARK 3 L13: 3.6198 L23: 2.9462 REMARK 3 S TENSOR REMARK 3 S11: -0.3375 S12: 0.3131 S13: 0.6860 REMARK 3 S21: 0.9596 S22: -0.1909 S23: -0.5267 REMARK 3 S31: 0.1519 S32: 1.1345 S33: 0.5307 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN P AND RESID 312:320) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1933 -4.5522 -2.1874 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.5998 REMARK 3 T33: 0.5259 T12: -0.0427 REMARK 3 T13: -0.1632 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 8.4859 L22: 3.7645 REMARK 3 L33: 4.7988 L12: 3.9468 REMARK 3 L13: 1.3373 L23: 3.5968 REMARK 3 S TENSOR REMARK 3 S11: -0.5395 S12: -0.6302 S13: 0.4260 REMARK 3 S21: 0.4139 S22: 0.2210 S23: -1.0744 REMARK 3 S31: -0.1651 S32: 0.6116 S33: 0.1243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23370 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52500 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBS 5JR1, 5IIE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE DECAHYDRATE, 20% REMARK 280 PEG 3,350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.92750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.37600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.90850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.37600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.92750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.90850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN P 301 REMARK 465 ASN P 302 REMARK 465 THR P 303 REMARK 465 ARG P 304 REMARK 465 GLY P 321 REMARK 465 GLY P 322 REMARK 465 ILE P 323 REMARK 465 ILE P 324 REMARK 465 GLY P 325 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 THR H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 GLY H 218 REMARK 465 GLN L 1 REMARK 465 ALA L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS P 305 O HOH P 501 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 53 -161.03 -77.94 REMARK 500 HIS H 100 17.06 58.67 REMARK 500 ASP H 144 66.85 63.90 REMARK 500 ARG L 16 -2.70 68.19 REMARK 500 LYS L 17 -165.24 -105.52 REMARK 500 ASN L 27B -89.48 -117.16 REMARK 500 PRO L 40 114.80 -37.66 REMARK 500 ASN L 51 -48.15 71.29 REMARK 500 ASP L 52 16.91 -143.02 REMARK 500 GLU L 198 -106.54 46.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 P 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 302 DBREF1 6MNR P 301 325 UNP A0A0K0KAD3_9HIV1 DBREF2 6MNR P A0A0K0KAD3 71 93 DBREF 6MNR H 1 218 PDB 6MNR 6MNR 1 218 DBREF 6MNR L 1 212 PDB 6MNR 6MNR 1 212 SEQRES 1 P 23 ASN ASN THR ARG LYS SER ILE ARG ILE GLY PRO GLY GLN SEQRES 2 P 23 ALA PHE TYR ALA THR GLY GLY ILE ILE GLY SEQRES 1 H 227 GLU VAL HIS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 227 PRO GLY GLY SER LEU ARG LEU SER CYS GLU VAL SER GLY SEQRES 3 H 227 LEU THR PHE SER ASN SER TRP MET SER TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY PHE ILE LYS SEQRES 5 H 227 THR LYS ALA ASP GLY GLY THR ALA ALA TYR ALA GLU SER SEQRES 6 H 227 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 227 ASN THR VAL PHE LEU GLN MET LYS SER LEU LYS THR GLU SEQRES 8 H 227 ASP THR ALA VAL TYR TYR CYS GLN GLY ALA VAL VAL ILE SEQRES 9 H 227 SER HIS GLU TYR ILE GLU ILE TRP GLY GLN GLY ALA LEU SEQRES 10 H 227 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 227 PHE PRO LEU ALA PRO SER SER ARG SER THR SER GLU SER SEQRES 12 H 227 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 227 GLU PRO VAL THR VAL SER TRP ASN SER GLY SER LEU THR SEQRES 14 H 227 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 227 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 227 SER SER LEU GLY THR GLN THR TYR VAL CYS ASN VAL ASN SEQRES 17 H 227 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 227 ILE LYS THR CYS GLY GLY SEQRES 1 L 216 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLU ALA SEQRES 2 L 216 ALA ARG LYS SER VAL THR ILE SER CYS SER GLY GLY SER SEQRES 3 L 216 SER ASN ILE GLY ASP ASP SER VAL SER TRP TYR GLN GLN SEQRES 4 L 216 VAL PRO GLY THR ALA PRO LYS LEU LEU ILE TYR TYR ASN SEQRES 5 L 216 ASP ARG ARG ALA SER GLY VAL SER ASP ARG PHE SER GLY SEQRES 6 L 216 SER LYS SER GLY THR SER ALA SER LEU ALA ILE ASN GLY SEQRES 7 L 216 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 216 TRP ASP ASP SER LEU SER ALA TYR ILE PHE GLY SER GLY SEQRES 9 L 216 THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA SER PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY VAL VAL LYS VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 216 SER ALA VAL ASN ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR SER ASP GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO ALA GLU CYS SER HET SO4 P 401 5 HET SO4 H 301 5 HET SO4 L 301 5 HET EDO L 302 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *84(H2 O) HELIX 1 AA1 THR H 28 SER H 32 5 5 HELIX 2 AA2 ASP H 73 LYS H 75 5 3 HELIX 3 AA3 LYS H 83 THR H 87 5 5 HELIX 4 AA4 SER H 156 SER H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLN L 79 GLU L 83 5 5 HELIX 8 AA8 SER L 121 ALA L 127 1 7 HELIX 9 AA9 THR L 181 SER L 187 1 7 SHEET 1 AA1 2 ILE P 307 ILE P 309 0 SHEET 2 AA1 2 ALA P 316 ALA P 319 -1 O TYR P 318 N ILE P 307 SHEET 1 AA2 4 HIS H 3 SER H 7 0 SHEET 2 AA2 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA2 4 THR H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA2 4 PHE H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 AA3 6 GLY H 10 VAL H 12 0 SHEET 2 AA3 6 ALA H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA3 6 ALA H 88 ILE H 98 -1 N TYR H 90 O ALA H 107 SHEET 4 AA3 6 TRP H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA3 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA3 6 ALA H 57 TYR H 59 -1 O ALA H 58 N PHE H 50 SHEET 1 AA4 4 GLY H 10 VAL H 12 0 SHEET 2 AA4 4 ALA H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA4 4 ALA H 88 ILE H 98 -1 N TYR H 90 O ALA H 107 SHEET 4 AA4 4 GLU H 100A TRP H 103 -1 O GLU H 100A N ILE H 98 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA6 4 SER H 120 LEU H 124 0 SHEET 2 AA6 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA6 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA6 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA7 3 THR H 151 TRP H 154 0 SHEET 2 AA7 3 VAL H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA7 3 THR H 205 ARG H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AA8 6 SER L 10 ALA L 14 0 SHEET 2 AA8 6 THR L 102 LEU L 106A 1 O THR L 105 N ALA L 11 SHEET 3 AA8 6 ASP L 85 ASP L 92 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 SER L 34 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA8 6 ARG L 53 ARG L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 14 0 SHEET 2 AA9 4 THR L 102 LEU L 106A 1 O THR L 105 N ALA L 11 SHEET 3 AA9 4 ASP L 85 ASP L 92 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 ALA L 95B PHE L 98 -1 O ALA L 95B N ASP L 92 SHEET 1 AB1 3 VAL L 19 SER L 24 0 SHEET 2 AB1 3 SER L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 AB1 3 PHE L 62 SER L 67 -1 N SER L 63 O ALA L 74 SHEET 1 AB2 4 THR L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 131 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB2 4 TYR L 172 SER L 179 -1 O LEU L 178 N LEU L 132 SHEET 4 AB2 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB3 4 THR L 114 PHE L 118 0 SHEET 2 AB3 4 THR L 131 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB3 4 TYR L 172 SER L 179 -1 O LEU L 178 N LEU L 132 SHEET 4 AB3 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB4 4 SER L 153 VAL L 155 0 SHEET 2 AB4 4 LYS L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB4 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB4 4 SER L 200 VAL L 206 -1 O SER L 200 N HIS L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.07 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -6.70 CISPEP 2 GLU H 148 PRO H 149 0 1.43 CISPEP 3 TYR L 140 PRO L 141 0 1.73 SITE 1 AC1 3 LYS H 82A SER P 306 ARG P 308 SITE 1 AC2 6 GLU H 1 GLN H 171 SER H 172 HOH H 411 SITE 2 AC2 6 GLU L 160 SER L 179 SITE 1 AC3 7 GLU L 83 ARG L 103 THR L 105 TYR L 140 SITE 2 AC3 7 LYS L 166 TYR L 172 HOH L 404 SITE 1 AC4 3 SER L 59 ARG L 61 GLN L 79 CRYST1 45.855 71.817 134.752 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007421 0.00000