HEADER LYASE 03-OCT-18 6MNZ TITLE CRYSTAL STRUCTURE OF RIBBX, A TWO DOMAIN 3,4-DIHYDROXY-2-BUTANONE 4- TITLE 2 PHOSPHATE SYNTHASE FROM A. BAUMANNII. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHBP SYNTHASE; COMPND 5 EC: 4.1.99.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: RIBB, RIBBA, A7M79_16415, A7M90_07480, A7N09_07660, SOURCE 5 AB895_1395, APD06_16235, AZE33_19550, B4R90_18035, BGC29_12000, SOURCE 6 BWP00_07280, C2U32_13770, CAS83_08960, CBE85_14000, CHQ89_12900, SOURCE 7 CPI82_04655, IX87_13995, LV38_00273; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS LYASE, 3, 4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,G.GONZALEZ-GUTIERREZ,D.P.GIEDROC REVDAT 4 13-MAR-24 6MNZ 1 REMARK REVDAT 3 18-DEC-19 6MNZ 1 REMARK REVDAT 2 29-MAY-19 6MNZ 1 JRNL REVDAT 1 17-APR-19 6MNZ 0 JRNL AUTH J.WANG,Z.R.LONERGAN,G.GONZALEZ-GUTIERREZ,B.L.NAIRN, JRNL AUTH 2 C.N.MAXWELL,Y.ZHANG,C.ANDREINI,J.A.KARTY,W.J.CHAZIN, JRNL AUTH 3 J.C.TRINIDAD,E.P.SKAAR,D.P.GIEDROC JRNL TITL MULTI-METAL RESTRICTION BY CALPROTECTIN IMPACTS DE NOVO JRNL TITL 2 FLAVIN BIOSYNTHESIS IN ACINETOBACTER BAUMANNII. JRNL REF CELL CHEM BIOL V. 26 745 2019 JRNL REFN ESSN 2451-9456 JRNL PMID 30905682 JRNL DOI 10.1016/J.CHEMBIOL.2019.02.011 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 22929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.4500 - 5.3200 0.99 2748 150 0.2601 0.2567 REMARK 3 2 5.3200 - 4.2200 0.98 2713 143 0.2306 0.2359 REMARK 3 3 4.2200 - 3.6900 0.98 2658 155 0.2516 0.3000 REMARK 3 4 3.6900 - 3.3500 0.99 2732 127 0.2789 0.3306 REMARK 3 5 3.3500 - 3.1100 0.99 2708 152 0.2925 0.3322 REMARK 3 6 3.1100 - 2.9300 1.00 2748 129 0.3406 0.3433 REMARK 3 7 2.9300 - 2.7800 1.00 2740 162 0.3771 0.4503 REMARK 3 8 2.7800 - 2.6600 1.00 2705 159 0.4037 0.4486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.523 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.488 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5286 REMARK 3 ANGLE : 0.539 7160 REMARK 3 CHIRALITY : 0.042 826 REMARK 3 PLANARITY : 0.000 0 REMARK 3 DIHEDRAL : 0.713 1232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000236880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 68.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.12200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MES PH 6.5, 100 MM NACL, 150 MM REMARK 280 AMMONIA SULFATE, 19% (W/V) PEG 1000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.35350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.42850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.35350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 68.42850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 537 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLN A 80 REMARK 465 HIS A 81 REMARK 465 ASN A 274 REMARK 465 LEU A 275 REMARK 465 ASP A 276 REMARK 465 ARG A 277 REMARK 465 ALA A 278 REMARK 465 LEU A 279 REMARK 465 GLN A 280 REMARK 465 THR A 281 REMARK 465 ILE A 282 REMARK 465 ALA A 283 REMARK 465 ALA A 284 REMARK 465 SER A 285 REMARK 465 ASP A 286 REMARK 465 ARG A 287 REMARK 465 GLY A 288 REMARK 465 ASP A 306 REMARK 465 ASP A 307 REMARK 465 LEU A 308 REMARK 465 THR A 309 REMARK 465 LYS A 310 REMARK 465 PRO A 311 REMARK 465 LYS A 312 REMARK 465 PRO A 313 REMARK 465 VAL A 314 REMARK 465 LYS A 315 REMARK 465 SER A 316 REMARK 465 ASN A 317 REMARK 465 GLN A 369 REMARK 465 ILE A 370 REMARK 465 THR A 371 REMARK 465 THR A 372 REMARK 465 LYS A 373 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 GLN B 80 REMARK 465 HIS B 81 REMARK 465 ASN B 274 REMARK 465 LEU B 275 REMARK 465 ASP B 276 REMARK 465 ARG B 277 REMARK 465 ALA B 278 REMARK 465 LEU B 279 REMARK 465 GLN B 280 REMARK 465 THR B 281 REMARK 465 ILE B 282 REMARK 465 ALA B 283 REMARK 465 ALA B 284 REMARK 465 SER B 285 REMARK 465 ASP B 286 REMARK 465 ARG B 287 REMARK 465 GLY B 288 REMARK 465 ASP B 306 REMARK 465 ASP B 307 REMARK 465 LEU B 308 REMARK 465 THR B 309 REMARK 465 LYS B 310 REMARK 465 PRO B 311 REMARK 465 LYS B 312 REMARK 465 PRO B 313 REMARK 465 VAL B 314 REMARK 465 LYS B 315 REMARK 465 SER B 316 REMARK 465 ASN B 317 REMARK 465 GLN B 369 REMARK 465 ILE B 370 REMARK 465 THR B 371 REMARK 465 THR B 372 REMARK 465 LYS B 373 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 242 H GLU B 245 1.51 REMARK 500 H GLY A 31 O HOH A 515 1.56 REMARK 500 O GLU B 270 H TRP B 273 1.58 REMARK 500 H ASP B 210 O HOH B 506 1.59 REMARK 500 O VAL A 56 O HOH A 501 2.02 REMARK 500 OH TYR B 218 O HOH B 501 2.03 REMARK 500 O LEU A 305 O HOH A 502 2.04 REMARK 500 O HOH B 524 O HOH B 550 2.06 REMARK 500 O HOH A 527 O HOH A 548 2.06 REMARK 500 O MET B 342 O HOH B 502 2.07 REMARK 500 NH2 ARG A 140 O1 SO4 A 401 2.14 REMARK 500 O2 SO4 B 403 O HOH B 503 2.14 REMARK 500 O SER B 256 NH1 ARG B 259 2.14 REMARK 500 OD1 ASP A 149 O HOH A 503 2.14 REMARK 500 N VAL A 289 O HOH A 504 2.14 REMARK 500 OE1 GLN A 299 O HOH A 505 2.16 REMARK 500 NH2 ARG B 140 O2 SO4 B 401 2.16 REMARK 500 O GLU B 242 N GLU B 245 2.16 REMARK 500 O ILE B 49 O HOH B 504 2.16 REMARK 500 ND2 ASN A 265 OD1 ASP B 260 2.17 REMARK 500 O HOH B 509 O HOH B 514 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 504 O HOH B 504 21257 1.77 REMARK 500 ND2 ASN A 77 O GLN A 123 21257 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27 -69.04 -99.18 REMARK 500 ASP A 75 -61.12 -102.63 REMARK 500 THR A 96 -64.04 -95.55 REMARK 500 HIS A 139 -53.98 -120.05 REMARK 500 ALA A 141 55.09 -94.51 REMARK 500 PRO A 158 59.69 -68.63 REMARK 500 LEU A 261 -62.66 -101.80 REMARK 500 ALA A 267 0.33 -64.98 REMARK 500 ALA A 304 -4.76 73.29 REMARK 500 LEU A 354 -66.50 -95.30 REMARK 500 SER A 355 -11.77 73.04 REMARK 500 ASN A 358 82.23 59.69 REMARK 500 LEU A 359 -167.31 -27.67 REMARK 500 GLU A 360 93.93 -63.88 REMARK 500 ASP B 75 -61.63 -101.73 REMARK 500 THR B 96 -65.60 -97.37 REMARK 500 ALA B 141 56.92 -95.61 REMARK 500 PRO B 158 60.45 -68.73 REMARK 500 SER B 256 114.23 -160.74 REMARK 500 LEU B 261 -65.10 -101.52 REMARK 500 PRO B 271 1.00 -64.44 REMARK 500 ALA B 304 -7.44 72.24 REMARK 500 PHE B 357 -167.38 -125.77 REMARK 500 GLU B 360 91.05 -69.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 93 GLY A 94 142.78 REMARK 500 ASN A 231 PRO A 232 144.73 REMARK 500 ASP A 233 ILE A 234 144.11 REMARK 500 LEU A 354 SER A 355 147.35 REMARK 500 ASN A 358 LEU A 359 -148.12 REMARK 500 LEU A 359 GLU A 360 -149.41 REMARK 500 GLU B 93 GLY B 94 143.72 REMARK 500 VAL B 258 ARG B 259 136.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 259 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 27 -10.12 REMARK 500 ALA A 272 12.70 REMARK 500 ASN A 358 -12.14 REMARK 500 LEU A 359 13.60 REMARK 500 ARG B 259 10.01 REMARK 500 ALA B 272 -11.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 406 DBREF 6MNZ A 1 373 UNP V5V8R9 V5V8R9_ACIBA 1 373 DBREF 6MNZ B 1 373 UNP V5V8R9 V5V8R9_ACIBA 1 373 SEQRES 1 A 373 MET PRO LEU SER ARG VAL GLU GLU LEU VAL ALA ASP ILE SEQRES 2 A 373 ARG ALA GLY LYS MET VAL ILE LEU MET ASP ASP GLU ASP SEQRES 3 A 373 ARG GLU ASN GLU GLY ASP LEU VAL ILE ALA ALA THR HIS SEQRES 4 A 373 VAL ARG PRO GLU ASP ILE ASN PHE MET ILE THR HIS ALA SEQRES 5 A 373 ARG GLY LEU VAL CYS LEU THR LEU SER ARG GLU ARG CYS SEQRES 6 A 373 LYS GLN LEU ASN LEU PRO LEU MET VAL ASP GLN ASN GLY SEQRES 7 A 373 ALA GLN HIS GLY THR ASN PHE THR LEU SER ILE GLU ALA SEQRES 8 A 373 ALA GLU GLY ILE THR THR GLY ILE SER ALA ALA GLU ARG SEQRES 9 A 373 ALA HIS THR ILE GLN ALA ALA VAL ALA ALA HIS ALA LYS SEQRES 10 A 373 PRO THR ASP ILE VAL GLN PRO GLY HIS ILE PHE PRO LEU SEQRES 11 A 373 MET ALA GLN PRO GLY GLY VAL LEU HIS ARG ALA GLY HIS SEQRES 12 A 373 THR GLU ALA GLY CYS ASP LEU ALA ARG LEU ALA GLY LEU SEQRES 13 A 373 GLU PRO ALA SER VAL ILE CYS GLU ILE ILE LYS GLU ASP SEQRES 14 A 373 GLY THR MET ALA ARG ARG ALA ASP LEU GLU ILE PHE ALA SEQRES 15 A 373 GLU LYS HIS GLY LEU LYS ILE GLY THR ILE ALA ASP LEU SEQRES 16 A 373 ILE HIS TYR ARG MET THR ASN GLU GLN THR VAL GLU ARG SEQRES 17 A 373 LEU ASP GLN ARG THR ILE GLN THR GLU TYR GLY SER PHE SEQRES 18 A 373 GLU LEU TYR ARG TYR ARG GLU ILE GLY ASN PRO ASP ILE SEQRES 19 A 373 HIS LEU ALA LEU VAL LYS GLY GLU PRO LYS GLU GLY VAL SEQRES 20 A 373 THR THR VAL ARG VAL HIS GLY PHE SER PRO VAL ARG ASP SEQRES 21 A 373 LEU LEU LYS LEU ASN LYS ALA ASP GLY GLU PRO ALA TRP SEQRES 22 A 373 ASN LEU ASP ARG ALA LEU GLN THR ILE ALA ALA SER ASP SEQRES 23 A 373 ARG GLY VAL LEU VAL TRP ILE GLY GLN ASP HIS LEU GLN SEQRES 24 A 373 ASP LEU GLY PRO ALA LEU ASP ASP LEU THR LYS PRO LYS SEQRES 25 A 373 PRO VAL LYS SER ASN ALA ALA LEU SER HIS GLN TYR GLN SEQRES 26 A 373 THR ILE GLY VAL GLY ALA GLN ILE LEU ARG ASP LEU GLY SEQRES 27 A 373 VAL GLU LYS MET LYS LEU LEU SER SER PRO LEU ARG PHE SEQRES 28 A 373 ASN ALA LEU SER GLY PHE ASN LEU GLU VAL VAL GLU TYR SEQRES 29 A 373 VAL THR ALA ASP GLN ILE THR THR LYS SEQRES 1 B 373 MET PRO LEU SER ARG VAL GLU GLU LEU VAL ALA ASP ILE SEQRES 2 B 373 ARG ALA GLY LYS MET VAL ILE LEU MET ASP ASP GLU ASP SEQRES 3 B 373 ARG GLU ASN GLU GLY ASP LEU VAL ILE ALA ALA THR HIS SEQRES 4 B 373 VAL ARG PRO GLU ASP ILE ASN PHE MET ILE THR HIS ALA SEQRES 5 B 373 ARG GLY LEU VAL CYS LEU THR LEU SER ARG GLU ARG CYS SEQRES 6 B 373 LYS GLN LEU ASN LEU PRO LEU MET VAL ASP GLN ASN GLY SEQRES 7 B 373 ALA GLN HIS GLY THR ASN PHE THR LEU SER ILE GLU ALA SEQRES 8 B 373 ALA GLU GLY ILE THR THR GLY ILE SER ALA ALA GLU ARG SEQRES 9 B 373 ALA HIS THR ILE GLN ALA ALA VAL ALA ALA HIS ALA LYS SEQRES 10 B 373 PRO THR ASP ILE VAL GLN PRO GLY HIS ILE PHE PRO LEU SEQRES 11 B 373 MET ALA GLN PRO GLY GLY VAL LEU HIS ARG ALA GLY HIS SEQRES 12 B 373 THR GLU ALA GLY CYS ASP LEU ALA ARG LEU ALA GLY LEU SEQRES 13 B 373 GLU PRO ALA SER VAL ILE CYS GLU ILE ILE LYS GLU ASP SEQRES 14 B 373 GLY THR MET ALA ARG ARG ALA ASP LEU GLU ILE PHE ALA SEQRES 15 B 373 GLU LYS HIS GLY LEU LYS ILE GLY THR ILE ALA ASP LEU SEQRES 16 B 373 ILE HIS TYR ARG MET THR ASN GLU GLN THR VAL GLU ARG SEQRES 17 B 373 LEU ASP GLN ARG THR ILE GLN THR GLU TYR GLY SER PHE SEQRES 18 B 373 GLU LEU TYR ARG TYR ARG GLU ILE GLY ASN PRO ASP ILE SEQRES 19 B 373 HIS LEU ALA LEU VAL LYS GLY GLU PRO LYS GLU GLY VAL SEQRES 20 B 373 THR THR VAL ARG VAL HIS GLY PHE SER PRO VAL ARG ASP SEQRES 21 B 373 LEU LEU LYS LEU ASN LYS ALA ASP GLY GLU PRO ALA TRP SEQRES 22 B 373 ASN LEU ASP ARG ALA LEU GLN THR ILE ALA ALA SER ASP SEQRES 23 B 373 ARG GLY VAL LEU VAL TRP ILE GLY GLN ASP HIS LEU GLN SEQRES 24 B 373 ASP LEU GLY PRO ALA LEU ASP ASP LEU THR LYS PRO LYS SEQRES 25 B 373 PRO VAL LYS SER ASN ALA ALA LEU SER HIS GLN TYR GLN SEQRES 26 B 373 THR ILE GLY VAL GLY ALA GLN ILE LEU ARG ASP LEU GLY SEQRES 27 B 373 VAL GLU LYS MET LYS LEU LEU SER SER PRO LEU ARG PHE SEQRES 28 B 373 ASN ALA LEU SER GLY PHE ASN LEU GLU VAL VAL GLU TYR SEQRES 29 B 373 VAL THR ALA ASP GLN ILE THR THR LYS HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET CL A 405 1 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET CL B 406 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 SO4 9(O4 S 2-) FORMUL 7 CL 2(CL 1-) FORMUL 14 HOH *122(H2 O) HELIX 1 AA1 ARG A 5 GLY A 16 1 12 HELIX 2 AA2 THR A 38 VAL A 40 5 3 HELIX 3 AA3 ARG A 41 ALA A 52 1 12 HELIX 4 AA4 SER A 61 ASN A 69 1 9 HELIX 5 AA5 SER A 100 ALA A 113 1 14 HELIX 6 AA6 LYS A 117 ILE A 121 5 5 HELIX 7 AA7 GLY A 135 HIS A 139 5 5 HELIX 8 AA8 GLY A 142 ALA A 154 1 13 HELIX 9 AA9 ARG A 174 HIS A 185 1 12 HELIX 10 AB1 ILE A 192 GLU A 203 1 12 HELIX 11 AB2 GLU A 242 GLY A 246 5 5 HELIX 12 AB3 ASN A 265 GLU A 270 1 6 HELIX 13 AB4 ALA A 319 LEU A 337 1 19 HELIX 14 AB5 ARG B 5 ALA B 15 1 11 HELIX 15 AB6 THR B 38 VAL B 40 5 3 HELIX 16 AB7 ARG B 41 ALA B 52 1 12 HELIX 17 AB8 SER B 61 ASN B 69 1 9 HELIX 18 AB9 SER B 100 ALA B 113 1 14 HELIX 19 AC1 LYS B 117 ILE B 121 5 5 HELIX 20 AC2 GLY B 135 HIS B 139 5 5 HELIX 21 AC3 GLY B 142 ALA B 154 1 13 HELIX 22 AC4 ARG B 174 HIS B 185 1 12 HELIX 23 AC5 ILE B 192 GLU B 203 1 12 HELIX 24 AC6 GLU B 242 GLU B 245 5 4 HELIX 25 AC7 ASN B 265 GLU B 270 1 6 HELIX 26 AC8 ALA B 319 LEU B 337 1 19 SHEET 1 AA1 7 GLU A 90 ALA A 91 0 SHEET 2 AA1 7 VAL A 122 MET A 131 -1 O ILE A 127 N GLU A 90 SHEET 3 AA1 7 CYS A 57 LEU A 60 1 N LEU A 60 O LEU A 130 SHEET 4 AA1 7 SER A 160 GLU A 164 -1 O ILE A 162 N CYS A 57 SHEET 5 AA1 7 GLY A 31 ALA A 36 -1 N ILE A 35 O VAL A 161 SHEET 6 AA1 7 VAL A 19 MET A 22 -1 N LEU A 21 O ASP A 32 SHEET 7 AA1 7 LYS A 188 THR A 191 1 O GLY A 190 N MET A 22 SHEET 1 AA2 7 VAL A 206 GLN A 215 0 SHEET 2 AA2 7 SER A 220 GLU A 228 -1 O ARG A 225 N LEU A 209 SHEET 3 AA2 7 HIS A 235 VAL A 239 -1 O HIS A 235 N TYR A 226 SHEET 4 AA2 7 LEU A 290 TRP A 292 -1 O LEU A 290 N LEU A 238 SHEET 5 AA2 7 THR A 248 HIS A 253 1 N ARG A 251 O VAL A 291 SHEET 6 AA2 7 MET A 342 LEU A 344 1 O LYS A 343 N THR A 248 SHEET 7 AA2 7 VAL A 362 VAL A 365 1 O TYR A 364 N LEU A 344 SHEET 1 AA3 7 GLU B 90 ALA B 91 0 SHEET 2 AA3 7 VAL B 122 MET B 131 -1 O ILE B 127 N GLU B 90 SHEET 3 AA3 7 CYS B 57 LEU B 60 1 N LEU B 60 O LEU B 130 SHEET 4 AA3 7 SER B 160 GLU B 164 -1 O ILE B 162 N CYS B 57 SHEET 5 AA3 7 GLY B 31 ALA B 36 -1 N ILE B 35 O VAL B 161 SHEET 6 AA3 7 MET B 18 MET B 22 -1 N LEU B 21 O ASP B 32 SHEET 7 AA3 7 ILE B 189 THR B 191 1 O GLY B 190 N MET B 22 SHEET 1 AA4 4 VAL B 206 GLN B 215 0 SHEET 2 AA4 4 SER B 220 GLU B 228 -1 O ARG B 225 N LEU B 209 SHEET 3 AA4 4 ILE B 234 VAL B 239 -1 O HIS B 235 N TYR B 226 SHEET 4 AA4 4 LEU B 290 TRP B 292 -1 O LEU B 290 N LEU B 238 SHEET 1 AA5 3 VAL B 247 VAL B 250 0 SHEET 2 AA5 3 LYS B 341 LEU B 344 1 O LYS B 343 N THR B 248 SHEET 3 AA5 3 VAL B 362 VAL B 365 1 O TYR B 364 N LEU B 344 CISPEP 1 GLN A 123 PRO A 124 0 -1.56 CISPEP 2 GLN B 123 PRO B 124 0 -1.11 SITE 1 AC1 7 ARG A 27 GLU A 28 ASN A 84 ARG A 140 SITE 2 AC1 7 GLY A 142 HIS A 143 THR A 144 SITE 1 AC2 4 ARG A 251 LEU A 264 SER A 346 SER A 347 SITE 1 AC3 4 THR A 171 ARG A 174 HOH A 509 HOH A 529 SITE 1 AC4 4 HIS A 51 PHE A 181 LYS A 184 HIS A 185 SITE 1 AC5 4 ALA A 91 THR A 97 GLY A 125 HIS A 126 SITE 1 AC6 7 ARG B 27 GLU B 28 ASN B 84 ARG B 140 SITE 2 AC6 7 GLY B 142 HIS B 143 THR B 144 SITE 1 AC7 4 ARG B 251 LEU B 264 SER B 346 SER B 347 SITE 1 AC8 5 HIS B 51 PHE B 181 LYS B 184 HOH B 503 SITE 2 AC8 5 HOH B 508 SITE 1 AC9 3 THR B 171 MET B 172 ARG B 174 SITE 1 AD1 3 ALA B 91 GLY B 125 HIS B 126 CRYST1 116.707 136.857 51.856 90.00 98.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008568 0.000000 0.001285 0.00000 SCALE2 0.000000 0.007307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019500 0.00000