data_6MPL # _entry.id 6MPL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6MPL pdb_00006mpl 10.2210/pdb6mpl/pdb WWPDB D_1000237362 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6MPL _pdbx_database_status.recvd_initial_deposition_date 2018-10-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kreitler, D.F.' 1 ? 'Yao, Z.' 2 ? 'Mortenson, D.E.' 3 ? 'Forest, K.T.' 4 ? 'Gellman, S.H.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 141 _citation.language ? _citation.page_first 1583 _citation.page_last 1592 _citation.title 'A Hendecad Motif Is Preferred for Heterochiral Coiled-Coil Formation.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.8b11246 _citation.pdbx_database_id_PubMed 30645104 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kreitler, D.F.' 1 ? primary 'Yao, Z.' 2 ? primary 'Steinkruger, J.D.' 3 ? primary 'Mortenson, D.E.' 4 ? primary 'Huang, L.' 5 ? primary 'Mittal, R.' 6 ? primary 'Travis, B.R.' 7 ? primary 'Forest, K.T.' 8 ? primary 'Gellman, S.H.' 9 ? # _cell.angle_alpha 94.270 _cell.angle_alpha_esd ? _cell.angle_beta 90.020 _cell.angle_beta_esd ? _cell.angle_gamma 109.510 _cell.angle_gamma_esd ? _cell.entry_id 6MPL _cell.details ? _cell.formula_units_Z ? _cell.length_a 17.120 _cell.length_a_esd ? _cell.length_b 18.840 _cell.length_b_esd ? _cell.length_c 37.020 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Matrix protein 2' 2437.043 1 ? 'I39A, G34A' 'residues 25-46' ? 2 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 3 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proton channel protein M2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)PLVVAASIIAILHLALWILDRL(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XPLVVAASIIAILHLALWILDRLX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 LEU n 1 4 VAL n 1 5 VAL n 1 6 ALA n 1 7 ALA n 1 8 SER n 1 9 ILE n 1 10 ILE n 1 11 ALA n 1 12 ILE n 1 13 LEU n 1 14 HIS n 1 15 LEU n 1 16 ALA n 1 17 LEU n 1 18 TRP n 1 19 ILE n 1 20 LEU n 1 21 ASP n 1 22 ARG n 1 23 LEU n 1 24 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 24 _pdbx_entity_src_syn.organism_scientific 'Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 130763 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code M2_I97A1 _struct_ref.pdbx_db_accession O70632 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PLVVAASIIGILHLILWILDRL _struct_ref.pdbx_align_begin 25 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6MPL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O70632 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 46 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6MPL ACE A 1 ? UNP O70632 ? ? acetylation 24 1 1 6MPL ALA A 11 ? UNP O70632 GLY 34 'engineered mutation' 34 2 1 6MPL ALA A 16 ? UNP O70632 ILE 39 'engineered mutation' 39 3 1 6MPL NH2 A 24 ? UNP O70632 ? ? amidation 47 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' 'Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside' 'C14 H28 O6' 292.369 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6MPL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.57 _exptl_crystal.description 'plate-like shards' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1 M N-(2-Acetamido)iminodiacetic acid 20% v/v (+/-)-2-Methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-07-26 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 48.960 _reflns.entry_id 6MPL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 17.701 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6048 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.51 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value .04353 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.36 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all .05219 _reflns.pdbx_Rpim_I_all .02847 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half .998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.605 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.19 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 577 _reflns_shell.percent_possible_all 93.97 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.pdbx_Rsym_value .1307 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all .1553 _reflns_shell.pdbx_Rpim_I_all .08356 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half .996 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 103.980 _refine.B_iso_mean 38.5849 _refine.B_iso_min 19.750 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6MPL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 17.7010 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6015 _refine.ls_number_reflns_R_free 606 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.5500 _refine.ls_percent_reflns_R_free 10.0700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2500 _refine.ls_R_factor_R_free 0.2614 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2486 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4RWC _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.5200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 17.7010 _refine_hist.pdbx_number_atoms_ligand 119 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 297 _refine_hist.pdbx_number_residues_total 24 _refine_hist.pdbx_B_iso_mean_ligand 65.14 _refine_hist.pdbx_B_iso_mean_solvent 37.99 _refine_hist.pdbx_number_atoms_protein 174 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5500 1.7059 1492 . 147 1345 95.0000 . . . 0.3016 0.0000 0.2777 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 1.7059 1.9525 1490 . 152 1338 95.0000 . . . 0.2920 0.0000 0.2668 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 1.9525 2.4589 1512 . 153 1359 96.0000 . . . 0.2603 0.0000 0.2407 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 2.4589 17.7026 1521 . 154 1367 96.0000 . . . 0.2508 0.0000 0.2447 . . . . . . 4 . . . # _struct.entry_id 6MPL _struct.title 'Racemic M2-TM I39A crystallized from racemic detergent' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6MPL _struct_keywords.text 'transmembrane, racemic, coiled-coil, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 23 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 25 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 46 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PRO 2 N ? ? A ACE 24 A PRO 25 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A LEU 23 C ? ? ? 1_555 A NH2 24 N ? ? A LEU 46 A NH2 47 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6MPL _atom_sites.fract_transf_matrix[1][1] 0.058411 _atom_sites.fract_transf_matrix[1][2] 0.020696 _atom_sites.fract_transf_matrix[1][3] 0.001663 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.056312 _atom_sites.fract_transf_matrix[2][3] 0.004469 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027097 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 24 24 ACE ACE A . n A 1 2 PRO 2 25 25 PRO PRO A . n A 1 3 LEU 3 26 26 LEU LEU A . n A 1 4 VAL 4 27 27 VAL VAL A . n A 1 5 VAL 5 28 28 VAL VAL A . n A 1 6 ALA 6 29 29 ALA ALA A . n A 1 7 ALA 7 30 30 ALA ALA A . n A 1 8 SER 8 31 31 SER SER A . n A 1 9 ILE 9 32 32 ILE ILE A . n A 1 10 ILE 10 33 33 ILE ILE A . n A 1 11 ALA 11 34 34 ALA ALA A . n A 1 12 ILE 12 35 35 ILE ILE A . n A 1 13 LEU 13 36 36 LEU LEU A . n A 1 14 HIS 14 37 37 HIS HIS A . n A 1 15 LEU 15 38 38 LEU LEU A . n A 1 16 ALA 16 39 39 ALA ALA A . n A 1 17 LEU 17 40 40 LEU LEU A . n A 1 18 TRP 18 41 41 TRP TRP A . n A 1 19 ILE 19 42 42 ILE ILE A . n A 1 20 LEU 20 43 43 LEU LEU A . n A 1 21 ASP 21 44 44 ASP ASP A . n A 1 22 ARG 22 45 45 ARG ARG A . n A 1 23 LEU 23 46 46 LEU LEU A . n A 1 24 NH2 24 47 47 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG 1 101 1 BOG BOG A . C 2 BOG 1 102 2 BOG BOG A . D 2 BOG 1 103 3 BOG BOG A . E 3 MPD 1 104 1 MPD MPD A . F 4 HOH 1 201 4 HOH HOH A . F 4 HOH 2 202 1 HOH HOH A . F 4 HOH 3 203 2 HOH HOH A . F 4 HOH 4 204 3 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-30 2 'Structure model' 1 1 2019-02-13 3 'Structure model' 1 2 2020-01-01 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-10-11 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Refinement description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_nonpoly 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_chem_comp.mon_nstd_flag' 7 4 'Structure model' '_chem_comp.name' 8 4 'Structure model' '_chem_comp.type' 9 4 'Structure model' '_entity.pdbx_description' 10 4 'Structure model' '_pdbx_entity_nonpoly.name' 11 5 'Structure model' '_chem_comp.pdbx_synonyms' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 4.8119 _pdbx_refine_tls.origin_y 5.3028 _pdbx_refine_tls.origin_z 13.2186 _pdbx_refine_tls.T[1][1] 0.2293 _pdbx_refine_tls.T[2][2] 0.1600 _pdbx_refine_tls.T[3][3] 0.3244 _pdbx_refine_tls.T[1][2] 0.0184 _pdbx_refine_tls.T[1][3] 0.0396 _pdbx_refine_tls.T[2][3] -0.0224 _pdbx_refine_tls.L[1][1] 1.4567 _pdbx_refine_tls.L[2][2] 6.7865 _pdbx_refine_tls.L[3][3] 7.5248 _pdbx_refine_tls.L[1][2] 0.6994 _pdbx_refine_tls.L[1][3] -0.2145 _pdbx_refine_tls.L[2][3] -6.5011 _pdbx_refine_tls.S[1][1] -0.1655 _pdbx_refine_tls.S[2][2] -0.0217 _pdbx_refine_tls.S[3][3] 0.1931 _pdbx_refine_tls.S[1][2] 0.0632 _pdbx_refine_tls.S[1][3] -0.2351 _pdbx_refine_tls.S[2][3] -0.3867 _pdbx_refine_tls.S[2][1] -0.1563 _pdbx_refine_tls.S[3][1] 0.1494 _pdbx_refine_tls.S[3][2] 0.0633 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 25 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 46 _pdbx_refine_tls_group.selection_details ;chain 'A' and (resid 25 through 46 ) ; _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 2 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A BOG 101 ? "C7'" ? B BOG 1 "C7'" 2 1 N 1 A BOG 101 ? "C8'" ? B BOG 1 "C8'" 3 1 N 1 A BOG 103 ? C1 ? D BOG 1 C1 4 1 N 1 A BOG 103 ? O1 ? D BOG 1 O1 5 1 N 1 A BOG 103 ? C2 ? D BOG 1 C2 6 1 N 1 A BOG 103 ? O2 ? D BOG 1 O2 7 1 N 1 A BOG 103 ? C3 ? D BOG 1 C3 8 1 N 1 A BOG 103 ? O3 ? D BOG 1 O3 9 1 N 1 A BOG 103 ? C4 ? D BOG 1 C4 10 1 N 1 A BOG 103 ? O4 ? D BOG 1 O4 11 1 N 1 A BOG 103 ? C5 ? D BOG 1 C5 12 1 N 1 A BOG 103 ? O5 ? D BOG 1 O5 13 1 N 1 A BOG 103 ? C6 ? D BOG 1 C6 14 1 N 1 A BOG 103 ? O6 ? D BOG 1 O6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASP N N N N 48 ASP CA C N S 49 ASP C C N N 50 ASP O O N N 51 ASP CB C N N 52 ASP CG C N N 53 ASP OD1 O N N 54 ASP OD2 O N N 55 ASP OXT O N N 56 ASP H H N N 57 ASP H2 H N N 58 ASP HA H N N 59 ASP HB2 H N N 60 ASP HB3 H N N 61 ASP HD2 H N N 62 ASP HXT H N N 63 BOG C1 C N R 64 BOG O1 O N N 65 BOG C2 C N R 66 BOG O2 O N N 67 BOG C3 C N S 68 BOG O3 O N N 69 BOG C4 C N S 70 BOG O4 O N N 71 BOG C5 C N R 72 BOG O5 O N N 73 BOG C6 C N N 74 BOG O6 O N N 75 BOG "C1'" C N N 76 BOG "C2'" C N N 77 BOG "C3'" C N N 78 BOG "C4'" C N N 79 BOG "C5'" C N N 80 BOG "C6'" C N N 81 BOG "C7'" C N N 82 BOG "C8'" C N N 83 BOG H1 H N N 84 BOG H2 H N N 85 BOG HO2 H N N 86 BOG H3 H N N 87 BOG HO3 H N N 88 BOG H4 H N N 89 BOG HO4 H N N 90 BOG H5 H N N 91 BOG H61 H N N 92 BOG H62 H N N 93 BOG HO6 H N N 94 BOG "H1'1" H N N 95 BOG "H1'2" H N N 96 BOG "H2'1" H N N 97 BOG "H2'2" H N N 98 BOG "H3'1" H N N 99 BOG "H3'2" H N N 100 BOG "H4'1" H N N 101 BOG "H4'2" H N N 102 BOG "H5'1" H N N 103 BOG "H5'2" H N N 104 BOG "H6'1" H N N 105 BOG "H6'2" H N N 106 BOG "H7'1" H N N 107 BOG "H7'2" H N N 108 BOG "H8'1" H N N 109 BOG "H8'2" H N N 110 BOG "H8'3" H N N 111 GLY N N N N 112 GLY CA C N N 113 GLY C C N N 114 GLY O O N N 115 GLY OXT O N N 116 GLY H H N N 117 GLY H2 H N N 118 GLY HA2 H N N 119 GLY HA3 H N N 120 GLY HXT H N N 121 HIS N N N N 122 HIS CA C N S 123 HIS C C N N 124 HIS O O N N 125 HIS CB C N N 126 HIS CG C Y N 127 HIS ND1 N Y N 128 HIS CD2 C Y N 129 HIS CE1 C Y N 130 HIS NE2 N Y N 131 HIS OXT O N N 132 HIS H H N N 133 HIS H2 H N N 134 HIS HA H N N 135 HIS HB2 H N N 136 HIS HB3 H N N 137 HIS HD1 H N N 138 HIS HD2 H N N 139 HIS HE1 H N N 140 HIS HE2 H N N 141 HIS HXT H N N 142 HOH O O N N 143 HOH H1 H N N 144 HOH H2 H N N 145 ILE N N N N 146 ILE CA C N S 147 ILE C C N N 148 ILE O O N N 149 ILE CB C N S 150 ILE CG1 C N N 151 ILE CG2 C N N 152 ILE CD1 C N N 153 ILE OXT O N N 154 ILE H H N N 155 ILE H2 H N N 156 ILE HA H N N 157 ILE HB H N N 158 ILE HG12 H N N 159 ILE HG13 H N N 160 ILE HG21 H N N 161 ILE HG22 H N N 162 ILE HG23 H N N 163 ILE HD11 H N N 164 ILE HD12 H N N 165 ILE HD13 H N N 166 ILE HXT H N N 167 LEU N N N N 168 LEU CA C N S 169 LEU C C N N 170 LEU O O N N 171 LEU CB C N N 172 LEU CG C N N 173 LEU CD1 C N N 174 LEU CD2 C N N 175 LEU OXT O N N 176 LEU H H N N 177 LEU H2 H N N 178 LEU HA H N N 179 LEU HB2 H N N 180 LEU HB3 H N N 181 LEU HG H N N 182 LEU HD11 H N N 183 LEU HD12 H N N 184 LEU HD13 H N N 185 LEU HD21 H N N 186 LEU HD22 H N N 187 LEU HD23 H N N 188 LEU HXT H N N 189 MPD C1 C N N 190 MPD C2 C N N 191 MPD O2 O N N 192 MPD CM C N N 193 MPD C3 C N N 194 MPD C4 C N S 195 MPD O4 O N N 196 MPD C5 C N N 197 MPD H11 H N N 198 MPD H12 H N N 199 MPD H13 H N N 200 MPD HO2 H N N 201 MPD HM1 H N N 202 MPD HM2 H N N 203 MPD HM3 H N N 204 MPD H31 H N N 205 MPD H32 H N N 206 MPD H4 H N N 207 MPD HO4 H N N 208 MPD H51 H N N 209 MPD H52 H N N 210 MPD H53 H N N 211 NH2 N N N N 212 NH2 HN1 H N N 213 NH2 HN2 H N N 214 PRO N N N N 215 PRO CA C N S 216 PRO C C N N 217 PRO O O N N 218 PRO CB C N N 219 PRO CG C N N 220 PRO CD C N N 221 PRO OXT O N N 222 PRO H H N N 223 PRO HA H N N 224 PRO HB2 H N N 225 PRO HB3 H N N 226 PRO HG2 H N N 227 PRO HG3 H N N 228 PRO HD2 H N N 229 PRO HD3 H N N 230 PRO HXT H N N 231 SER N N N N 232 SER CA C N S 233 SER C C N N 234 SER O O N N 235 SER CB C N N 236 SER OG O N N 237 SER OXT O N N 238 SER H H N N 239 SER H2 H N N 240 SER HA H N N 241 SER HB2 H N N 242 SER HB3 H N N 243 SER HG H N N 244 SER HXT H N N 245 TRP N N N N 246 TRP CA C N S 247 TRP C C N N 248 TRP O O N N 249 TRP CB C N N 250 TRP CG C Y N 251 TRP CD1 C Y N 252 TRP CD2 C Y N 253 TRP NE1 N Y N 254 TRP CE2 C Y N 255 TRP CE3 C Y N 256 TRP CZ2 C Y N 257 TRP CZ3 C Y N 258 TRP CH2 C Y N 259 TRP OXT O N N 260 TRP H H N N 261 TRP H2 H N N 262 TRP HA H N N 263 TRP HB2 H N N 264 TRP HB3 H N N 265 TRP HD1 H N N 266 TRP HE1 H N N 267 TRP HE3 H N N 268 TRP HZ2 H N N 269 TRP HZ3 H N N 270 TRP HH2 H N N 271 TRP HXT H N N 272 VAL N N N N 273 VAL CA C N S 274 VAL C C N N 275 VAL O O N N 276 VAL CB C N N 277 VAL CG1 C N N 278 VAL CG2 C N N 279 VAL OXT O N N 280 VAL H H N N 281 VAL H2 H N N 282 VAL HA H N N 283 VAL HB H N N 284 VAL HG11 H N N 285 VAL HG12 H N N 286 VAL HG13 H N N 287 VAL HG21 H N N 288 VAL HG22 H N N 289 VAL HG23 H N N 290 VAL HXT H N N 291 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASP N CA sing N N 45 ASP N H sing N N 46 ASP N H2 sing N N 47 ASP CA C sing N N 48 ASP CA CB sing N N 49 ASP CA HA sing N N 50 ASP C O doub N N 51 ASP C OXT sing N N 52 ASP CB CG sing N N 53 ASP CB HB2 sing N N 54 ASP CB HB3 sing N N 55 ASP CG OD1 doub N N 56 ASP CG OD2 sing N N 57 ASP OD2 HD2 sing N N 58 ASP OXT HXT sing N N 59 BOG C1 O1 sing N N 60 BOG C1 C2 sing N N 61 BOG C1 O5 sing N N 62 BOG C1 H1 sing N N 63 BOG O1 "C1'" sing N N 64 BOG C2 O2 sing N N 65 BOG C2 C3 sing N N 66 BOG C2 H2 sing N N 67 BOG O2 HO2 sing N N 68 BOG C3 O3 sing N N 69 BOG C3 C4 sing N N 70 BOG C3 H3 sing N N 71 BOG O3 HO3 sing N N 72 BOG C4 O4 sing N N 73 BOG C4 C5 sing N N 74 BOG C4 H4 sing N N 75 BOG O4 HO4 sing N N 76 BOG C5 O5 sing N N 77 BOG C5 C6 sing N N 78 BOG C5 H5 sing N N 79 BOG C6 O6 sing N N 80 BOG C6 H61 sing N N 81 BOG C6 H62 sing N N 82 BOG O6 HO6 sing N N 83 BOG "C1'" "C2'" sing N N 84 BOG "C1'" "H1'1" sing N N 85 BOG "C1'" "H1'2" sing N N 86 BOG "C2'" "C3'" sing N N 87 BOG "C2'" "H2'1" sing N N 88 BOG "C2'" "H2'2" sing N N 89 BOG "C3'" "C4'" sing N N 90 BOG "C3'" "H3'1" sing N N 91 BOG "C3'" "H3'2" sing N N 92 BOG "C4'" "C5'" sing N N 93 BOG "C4'" "H4'1" sing N N 94 BOG "C4'" "H4'2" sing N N 95 BOG "C5'" "C6'" sing N N 96 BOG "C5'" "H5'1" sing N N 97 BOG "C5'" "H5'2" sing N N 98 BOG "C6'" "C7'" sing N N 99 BOG "C6'" "H6'1" sing N N 100 BOG "C6'" "H6'2" sing N N 101 BOG "C7'" "C8'" sing N N 102 BOG "C7'" "H7'1" sing N N 103 BOG "C7'" "H7'2" sing N N 104 BOG "C8'" "H8'1" sing N N 105 BOG "C8'" "H8'2" sing N N 106 BOG "C8'" "H8'3" sing N N 107 GLY N CA sing N N 108 GLY N H sing N N 109 GLY N H2 sing N N 110 GLY CA C sing N N 111 GLY CA HA2 sing N N 112 GLY CA HA3 sing N N 113 GLY C O doub N N 114 GLY C OXT sing N N 115 GLY OXT HXT sing N N 116 HIS N CA sing N N 117 HIS N H sing N N 118 HIS N H2 sing N N 119 HIS CA C sing N N 120 HIS CA CB sing N N 121 HIS CA HA sing N N 122 HIS C O doub N N 123 HIS C OXT sing N N 124 HIS CB CG sing N N 125 HIS CB HB2 sing N N 126 HIS CB HB3 sing N N 127 HIS CG ND1 sing Y N 128 HIS CG CD2 doub Y N 129 HIS ND1 CE1 doub Y N 130 HIS ND1 HD1 sing N N 131 HIS CD2 NE2 sing Y N 132 HIS CD2 HD2 sing N N 133 HIS CE1 NE2 sing Y N 134 HIS CE1 HE1 sing N N 135 HIS NE2 HE2 sing N N 136 HIS OXT HXT sing N N 137 HOH O H1 sing N N 138 HOH O H2 sing N N 139 ILE N CA sing N N 140 ILE N H sing N N 141 ILE N H2 sing N N 142 ILE CA C sing N N 143 ILE CA CB sing N N 144 ILE CA HA sing N N 145 ILE C O doub N N 146 ILE C OXT sing N N 147 ILE CB CG1 sing N N 148 ILE CB CG2 sing N N 149 ILE CB HB sing N N 150 ILE CG1 CD1 sing N N 151 ILE CG1 HG12 sing N N 152 ILE CG1 HG13 sing N N 153 ILE CG2 HG21 sing N N 154 ILE CG2 HG22 sing N N 155 ILE CG2 HG23 sing N N 156 ILE CD1 HD11 sing N N 157 ILE CD1 HD12 sing N N 158 ILE CD1 HD13 sing N N 159 ILE OXT HXT sing N N 160 LEU N CA sing N N 161 LEU N H sing N N 162 LEU N H2 sing N N 163 LEU CA C sing N N 164 LEU CA CB sing N N 165 LEU CA HA sing N N 166 LEU C O doub N N 167 LEU C OXT sing N N 168 LEU CB CG sing N N 169 LEU CB HB2 sing N N 170 LEU CB HB3 sing N N 171 LEU CG CD1 sing N N 172 LEU CG CD2 sing N N 173 LEU CG HG sing N N 174 LEU CD1 HD11 sing N N 175 LEU CD1 HD12 sing N N 176 LEU CD1 HD13 sing N N 177 LEU CD2 HD21 sing N N 178 LEU CD2 HD22 sing N N 179 LEU CD2 HD23 sing N N 180 LEU OXT HXT sing N N 181 MPD C1 C2 sing N N 182 MPD C1 H11 sing N N 183 MPD C1 H12 sing N N 184 MPD C1 H13 sing N N 185 MPD C2 O2 sing N N 186 MPD C2 CM sing N N 187 MPD C2 C3 sing N N 188 MPD O2 HO2 sing N N 189 MPD CM HM1 sing N N 190 MPD CM HM2 sing N N 191 MPD CM HM3 sing N N 192 MPD C3 C4 sing N N 193 MPD C3 H31 sing N N 194 MPD C3 H32 sing N N 195 MPD C4 O4 sing N N 196 MPD C4 C5 sing N N 197 MPD C4 H4 sing N N 198 MPD O4 HO4 sing N N 199 MPD C5 H51 sing N N 200 MPD C5 H52 sing N N 201 MPD C5 H53 sing N N 202 NH2 N HN1 sing N N 203 NH2 N HN2 sing N N 204 PRO N CA sing N N 205 PRO N CD sing N N 206 PRO N H sing N N 207 PRO CA C sing N N 208 PRO CA CB sing N N 209 PRO CA HA sing N N 210 PRO C O doub N N 211 PRO C OXT sing N N 212 PRO CB CG sing N N 213 PRO CB HB2 sing N N 214 PRO CB HB3 sing N N 215 PRO CG CD sing N N 216 PRO CG HG2 sing N N 217 PRO CG HG3 sing N N 218 PRO CD HD2 sing N N 219 PRO CD HD3 sing N N 220 PRO OXT HXT sing N N 221 SER N CA sing N N 222 SER N H sing N N 223 SER N H2 sing N N 224 SER CA C sing N N 225 SER CA CB sing N N 226 SER CA HA sing N N 227 SER C O doub N N 228 SER C OXT sing N N 229 SER CB OG sing N N 230 SER CB HB2 sing N N 231 SER CB HB3 sing N N 232 SER OG HG sing N N 233 SER OXT HXT sing N N 234 TRP N CA sing N N 235 TRP N H sing N N 236 TRP N H2 sing N N 237 TRP CA C sing N N 238 TRP CA CB sing N N 239 TRP CA HA sing N N 240 TRP C O doub N N 241 TRP C OXT sing N N 242 TRP CB CG sing N N 243 TRP CB HB2 sing N N 244 TRP CB HB3 sing N N 245 TRP CG CD1 doub Y N 246 TRP CG CD2 sing Y N 247 TRP CD1 NE1 sing Y N 248 TRP CD1 HD1 sing N N 249 TRP CD2 CE2 doub Y N 250 TRP CD2 CE3 sing Y N 251 TRP NE1 CE2 sing Y N 252 TRP NE1 HE1 sing N N 253 TRP CE2 CZ2 sing Y N 254 TRP CE3 CZ3 doub Y N 255 TRP CE3 HE3 sing N N 256 TRP CZ2 CH2 doub Y N 257 TRP CZ2 HZ2 sing N N 258 TRP CZ3 CH2 sing Y N 259 TRP CZ3 HZ3 sing N N 260 TRP CH2 HH2 sing N N 261 TRP OXT HXT sing N N 262 VAL N CA sing N N 263 VAL N H sing N N 264 VAL N H2 sing N N 265 VAL CA C sing N N 266 VAL CA CB sing N N 267 VAL CA HA sing N N 268 VAL C O doub N N 269 VAL C OXT sing N N 270 VAL CB CG1 sing N N 271 VAL CB CG2 sing N N 272 VAL CB HB sing N N 273 VAL CG1 HG11 sing N N 274 VAL CG1 HG12 sing N N 275 VAL CG1 HG13 sing N N 276 VAL CG2 HG21 sing N N 277 VAL CG2 HG22 sing N N 278 VAL CG2 HG23 sing N N 279 VAL OXT HXT sing N N 280 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM061238 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' T32GM00839 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' T32GM08293 3 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'octyl beta-D-glucopyranoside' BOG 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4RWC _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #