HEADER MEMBRANE PROTEIN 07-OCT-18 6MPL TITLE RACEMIC M2-TM I39A CRYSTALLIZED FROM RACEMIC DETERGENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 25-46; COMPND 5 SYNONYM: PROTON CHANNEL PROTEIN M2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/HONG KONG/156/1997 SOURCE 4 H5N1 GENOTYPE GS/GD); SOURCE 5 ORGANISM_TAXID: 130763 KEYWDS TRANSMEMBRANE, RACEMIC, COILED-COIL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.F.KREITLER,Z.YAO,D.E.MORTENSON,K.T.FOREST,S.H.GELLMAN REVDAT 5 11-OCT-23 6MPL 1 HETSYN REVDAT 4 29-JUL-20 6MPL 1 COMPND REMARK HETNAM SITE REVDAT 3 01-JAN-20 6MPL 1 REMARK REVDAT 2 13-FEB-19 6MPL 1 JRNL REVDAT 1 30-JAN-19 6MPL 0 JRNL AUTH D.F.KREITLER,Z.YAO,J.D.STEINKRUGER,D.E.MORTENSON,L.HUANG, JRNL AUTH 2 R.MITTAL,B.R.TRAVIS,K.T.FOREST,S.H.GELLMAN JRNL TITL A HENDECAD MOTIF IS PREFERRED FOR HETEROCHIRAL COILED-COIL JRNL TITL 2 FORMATION. JRNL REF J. AM. CHEM. SOC. V. 141 1583 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 30645104 JRNL DOI 10.1021/JACS.8B11246 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 6015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.7026 - 2.4589 0.96 1367 154 0.2447 0.2508 REMARK 3 2 2.4589 - 1.9525 0.96 1359 153 0.2407 0.2603 REMARK 3 3 1.9525 - 1.7059 0.95 1338 152 0.2668 0.2920 REMARK 3 4 1.7059 - 1.5500 0.95 1345 147 0.2777 0.3016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8119 5.3028 13.2186 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.1600 REMARK 3 T33: 0.3244 T12: 0.0184 REMARK 3 T13: 0.0396 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.4567 L22: 6.7865 REMARK 3 L33: 7.5248 L12: 0.6994 REMARK 3 L13: -0.2145 L23: -6.5011 REMARK 3 S TENSOR REMARK 3 S11: -0.1655 S12: 0.0632 S13: -0.2351 REMARK 3 S21: -0.1563 S22: -0.0217 S23: -0.3867 REMARK 3 S31: 0.1494 S32: 0.0633 S33: 0.1931 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 17.701 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04353 REMARK 200 FOR THE DATA SET : 12.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13070 REMARK 200 FOR SHELL : 5.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RWC REMARK 200 REMARK 200 REMARK: PLATE-LIKE SHARDS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M N-(2-ACETAMIDO)IMINODIACETIC REMARK 280 ACID 20% V/V (+/-)-2-METHYL-2,4-PENTANEDIOL, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P -1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BOG A 101 REMARK 610 BOG A 103 DBREF 6MPL A 25 46 UNP O70632 M2_I97A1 25 46 SEQADV 6MPL ACE A 24 UNP O70632 ACETYLATION SEQADV 6MPL ALA A 34 UNP O70632 GLY 34 ENGINEERED MUTATION SEQADV 6MPL ALA A 39 UNP O70632 ILE 39 ENGINEERED MUTATION SEQADV 6MPL NH2 A 47 UNP O70632 AMIDATION SEQRES 1 A 24 ACE PRO LEU VAL VAL ALA ALA SER ILE ILE ALA ILE LEU SEQRES 2 A 24 HIS LEU ALA LEU TRP ILE LEU ASP ARG LEU NH2 HET ACE A 24 3 HET NH2 A 47 3 HET BOG A 101 41 HET BOG A 102 48 HET BOG A 103 8 HET MPD A 104 22 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 1 ACE C2 H4 O FORMUL 1 NH2 H2 N FORMUL 2 BOG 3(C14 H28 O6) FORMUL 5 MPD C6 H14 O2 FORMUL 6 HOH *4(H2 O) HELIX 1 AA1 PRO A 25 LEU A 46 1 22 LINK C ACE A 24 N PRO A 25 1555 1555 1.34 LINK C LEU A 46 N NH2 A 47 1555 1555 1.33 CRYST1 17.120 18.840 37.020 94.27 90.02 109.51 P -1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.058411 0.020696 0.001663 0.00000 SCALE2 0.000000 0.056312 0.004469 0.00000 SCALE3 0.000000 0.000000 0.027097 0.00000 HETATM 1 C ACE A 24 1.902 -3.884 27.597 1.00 27.58 C ANISOU 1 C ACE A 24 2965 2898 4617 76 7 493 C HETATM 2 O ACE A 24 1.799 -3.003 26.750 1.00 29.79 O ANISOU 2 O ACE A 24 3539 3034 4748 183 528 -275 O HETATM 3 CH3 ACE A 24 0.732 -4.342 28.405 1.00 30.96 C ANISOU 3 CH3 ACE A 24 3592 3505 4668 121 228 657 C